Wall clock time and date at job start Sun Mar 29 2020 21:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 111.00213 * 2 1 4 4 C 1.50699 * 109.46760 * 66.04801 * 3 2 1 5 5 H 1.07995 * 120.00197 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99904 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99793 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99891 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47505 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47268 * 119.99857 * 8 6 4 11 11 H 1.48504 * 109.47006 * 239.99604 * 8 6 4 12 12 C 1.46898 * 111.00029 * 236.05190 * 2 1 3 13 13 C 1.50705 * 109.46964 * 293.94855 * 12 2 1 14 14 C 1.38379 * 119.92632 * 269.97976 * 13 12 2 15 15 C 1.38342 * 120.30369 * 180.02562 * 14 13 12 16 16 C 1.37972 * 120.15304 * 359.67043 * 15 14 13 17 17 C 1.39616 * 119.84009 * 0.60500 * 16 15 14 18 18 C 1.43205 * 120.14614 * 179.69727 * 17 16 15 19 19 N 6.51485 * 57.01812 * 204.94758 * 2 1 3 20 20 C 1.37927 * 119.91836 * 89.99993 * 13 12 2 21 21 H 1.08996 * 109.47176 * 183.95051 * 1 2 3 22 22 H 1.09006 * 109.46851 * 303.95318 * 1 2 3 23 23 H 1.09000 * 109.47500 * 63.95302 * 1 2 3 24 24 H 1.08994 * 109.47512 * 186.05205 * 3 2 1 25 25 H 1.08998 * 109.46912 * 306.05363 * 3 2 1 26 26 H 0.97003 * 119.99876 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47271 * 173.95203 * 12 2 1 28 28 H 1.09000 * 109.47765 * 53.95009 * 12 2 1 29 29 H 1.08001 * 119.84560 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.92181 * 180.02562 * 15 14 13 31 31 H 1.07990 * 120.07788 * 180.30317 * 16 15 14 32 32 H 1.08003 * 120.08118 * 0.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3494 1.5286 7 7 2.7120 4.0019 0.6151 8 14 1.5831 4.1866 3.1384 9 1 0.8158 3.2440 3.9916 10 1 2.8251 4.5942 3.8432 11 1 0.7552 5.3876 2.8599 12 6 1.9954 -0.7658 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 6 2.4962 -3.0712 -0.3002 15 6 2.1752 -4.4079 -0.1449 16 6 0.9914 -4.9001 -0.6548 17 6 0.1226 -4.0484 -1.3397 18 6 -1.1048 -4.5538 -1.8772 19 7 -2.0776 -4.9550 -2.3050 20 6 0.4534 -2.7004 -1.4936 21 1 -0.3633 -1.0252 0.0708 22 1 -0.3633 0.5740 0.8525 23 1 -0.3634 0.4512 -0.9233 24 1 3.0797 1.3445 -0.1083 25 1 1.5610 1.9274 -0.8308 26 1 2.9866 4.9180 0.7771 27 1 3.0797 -0.6609 -1.1757 28 1 1.5611 -0.3871 -2.0629 29 1 3.4217 -2.6900 0.1055 30 1 2.8502 -5.0664 0.3816 31 1 0.7398 -5.9427 -0.5286 32 1 -0.2160 -2.0354 -2.0191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:14 Heat of formation + Delta-G solvation = 54.756131 kcal Electronic energy + Delta-G solvation = -14837.918220 eV Core-core repulsion = 12377.461853 eV Total energy + Delta-G solvation = -2460.456367 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.64060 -36.87050 -36.10294 -32.82043 -31.50147 -31.21839 -27.26142 -26.74468 -24.15739 -23.57728 -21.75176 -20.43307 -18.15381 -16.36109 -16.29766 -15.63170 -15.00623 -14.46919 -14.37622 -13.95820 -13.79487 -13.53298 -13.15320 -12.84722 -12.48485 -12.18263 -11.97251 -11.66607 -11.34144 -11.17081 -11.01947 -10.87944 -10.66718 -10.46013 -9.91194 -9.26446 -8.96536 -8.78442 -8.46801 -7.32708 -6.06401 -4.07682 0.78040 1.30245 2.59145 2.92714 3.29190 3.36937 3.41751 3.80688 3.85459 4.40853 4.78151 4.81897 5.04904 5.12752 5.28288 5.30219 5.42740 5.61136 5.81639 5.92908 6.06982 6.16342 6.22153 6.27857 6.30889 6.64109 6.72481 6.81336 7.21472 7.27834 7.40648 7.75235 8.01296 8.12429 8.48092 9.00257 9.56871 11.04508 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040665 B = 0.005122 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.394117 B = 5464.869778 C = 5668.659250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.534 5.534 3 C 0.192 3.808 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.086 3.914 13 C -0.061 4.061 14 C -0.067 4.067 15 C -0.123 4.123 16 C -0.079 4.079 17 C -0.039 4.039 18 C 0.262 3.738 19 N -0.430 5.430 20 C -0.065 4.065 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.011 0.989 24 H 0.031 0.969 25 H -0.008 1.008 26 H 0.261 0.739 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.071 -14.088 -2.843 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.258 5.258 3 C 0.067 3.933 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.042 4.042 13 C -0.062 4.062 14 C -0.086 4.086 15 C -0.141 4.141 16 C -0.100 4.100 17 C -0.042 4.042 18 C -0.053 4.053 19 N -0.105 5.105 20 C -0.086 4.086 21 H 0.066 0.934 22 H 0.094 0.906 23 H 0.030 0.970 24 H 0.049 0.951 25 H 0.010 0.990 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.200 -14.740 -3.110 15.112 hybrid contribution -0.115 1.183 0.267 1.218 sum -1.316 -13.557 -2.843 13.914 Atomic orbital electron populations 1.22307 0.88844 0.99786 1.00656 1.62176 1.07118 1.17788 1.38748 1.19774 0.95456 0.81245 0.96818 1.21190 1.34810 0.96896 1.01676 0.91743 1.24984 0.95274 0.97336 0.96997 1.69964 1.38403 1.11438 1.34034 0.86449 0.78175 0.79325 0.83522 1.19634 1.20980 1.21132 1.21106 1.00892 0.88625 0.93615 1.19939 0.93502 0.96478 0.96293 1.21368 0.99596 0.92695 0.94967 1.21075 0.96676 0.95846 1.00483 1.21073 0.93553 0.99113 0.96245 1.15947 0.90039 0.94252 1.03957 1.25804 0.92919 0.93339 0.93252 1.81223 1.11212 1.08456 1.09658 1.21127 0.96435 0.92928 0.98132 0.93372 0.90590 0.97024 0.95056 0.98999 0.92949 0.89966 0.94648 0.84912 0.85118 0.85481 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 8.95 60.06 0.54 1.15 16 2 N -0.53 -10.79 4.74 -245.83 -1.17 -11.95 16 3 C 0.19 4.77 4.72 -4.97 -0.02 4.75 16 4 C -0.51 -13.83 8.46 -34.44 -0.29 -14.12 16 5 H 0.06 1.75 7.12 -52.49 -0.37 1.38 16 6 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.09 1.38 5.11 -4.97 -0.03 1.35 16 13 C -0.06 -0.82 4.88 -104.68 -0.51 -1.33 16 14 C -0.07 -0.77 9.69 -39.49 -0.38 -1.15 16 15 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16 16 C -0.08 -0.76 9.76 -39.17 -0.38 -1.14 16 17 C -0.04 -0.44 5.73 -106.93 -0.61 -1.05 16 18 C 0.26 3.33 15.33 -22.47 -0.34 2.99 16 19 N -0.43 -6.31 18.54 41.83 0.78 -5.54 16 20 C -0.07 -0.80 7.66 -39.17 -0.30 -1.10 16 21 H 0.05 0.78 6.16 -51.93 -0.32 0.46 16 22 H 0.08 1.55 6.76 -51.93 -0.35 1.20 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 24 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 25 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.08 1.28 7.87 -51.93 -0.41 0.87 16 28 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.54 8.03 -52.48 -0.42 1.12 16 LS Contribution 283.90 15.07 4.28 4.28 Total: -1.00 -29.89 283.90 -7.18 -37.07 By element: Atomic # 1 Polarization: -0.95 SS G_CDS: -3.95 Total: -4.90 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.83 Total: -9.78 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.35 Total: -42.87 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.89 -7.18 -37.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.829 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds