Wall clock time and date at job start Sun Mar 29 2020 21:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46906 * 111.00213 * 2 1 4 4 C 1.50699 * 109.46760 * 66.04801 * 3 2 1 5 5 H 1.07995 * 120.00197 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99904 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99793 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99891 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47505 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47268 * 119.99857 * 8 6 4 11 11 H 1.48504 * 109.47006 * 239.99604 * 8 6 4 12 12 C 1.46898 * 111.00029 * 236.05190 * 2 1 3 13 13 C 1.50705 * 109.46964 * 293.94855 * 12 2 1 14 14 C 1.38379 * 119.92632 * 269.97976 * 13 12 2 15 15 C 1.38342 * 120.30369 * 180.02562 * 14 13 12 16 16 C 1.37972 * 120.15304 * 359.67043 * 15 14 13 17 17 C 1.39616 * 119.84009 * 0.60500 * 16 15 14 18 18 C 1.43205 * 120.14614 * 179.69727 * 17 16 15 19 19 N 6.51485 * 57.01812 * 204.94758 * 2 1 3 20 20 C 1.37927 * 119.91836 * 89.99993 * 13 12 2 21 21 H 1.08996 * 109.47176 * 183.95051 * 1 2 3 22 22 H 1.09006 * 109.46851 * 303.95318 * 1 2 3 23 23 H 1.09000 * 109.47500 * 63.95302 * 1 2 3 24 24 H 1.08994 * 109.47512 * 186.05205 * 3 2 1 25 25 H 1.08998 * 109.46912 * 306.05363 * 3 2 1 26 26 H 0.97003 * 119.99876 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47271 * 173.95203 * 12 2 1 28 28 H 1.09000 * 109.47765 * 53.95009 * 12 2 1 29 29 H 1.08001 * 119.84560 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.92181 * 180.02562 * 15 14 13 31 31 H 1.07990 * 120.07788 * 180.30317 * 16 15 14 32 32 H 1.08003 * 120.08118 * 0.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3494 1.5286 7 7 2.7120 4.0019 0.6151 8 14 1.5831 4.1866 3.1384 9 1 0.8158 3.2440 3.9916 10 1 2.8251 4.5942 3.8432 11 1 0.7552 5.3876 2.8599 12 6 1.9954 -0.7658 -1.1376 13 6 1.6370 -2.2204 -0.9729 14 6 2.4962 -3.0712 -0.3002 15 6 2.1752 -4.4079 -0.1449 16 6 0.9914 -4.9001 -0.6548 17 6 0.1226 -4.0484 -1.3397 18 6 -1.1048 -4.5538 -1.8772 19 7 -2.0776 -4.9550 -2.3050 20 6 0.4534 -2.7004 -1.4936 21 1 -0.3633 -1.0252 0.0708 22 1 -0.3633 0.5740 0.8525 23 1 -0.3634 0.4512 -0.9233 24 1 3.0797 1.3445 -0.1083 25 1 1.5610 1.9274 -0.8308 26 1 2.9866 4.9180 0.7771 27 1 3.0797 -0.6609 -1.1757 28 1 1.5611 -0.3871 -2.0629 29 1 3.4217 -2.6900 0.1055 30 1 2.8502 -5.0664 0.3816 31 1 0.7398 -5.9427 -0.5286 32 1 -0.2160 -2.0354 -2.0191 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:13 Heat of formation + Delta-G solvation = 36.878846 kcal Electronic energy + Delta-G solvation = -14838.693437 eV Core-core repulsion = 12377.461853 eV Total energy + Delta-G solvation = -2461.231584 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60893 -38.22697 -37.32406 -34.75679 -32.70024 -32.16594 -29.14870 -28.11680 -25.65812 -24.70810 -22.94325 -21.95801 -19.21057 -18.39674 -17.15185 -16.81329 -16.64171 -16.01720 -15.52989 -15.46612 -14.99011 -14.78001 -14.14497 -13.98973 -13.91936 -13.61293 -13.33782 -13.15185 -12.77819 -12.64638 -12.55617 -12.37019 -12.21847 -11.99395 -11.72873 -11.22839 -10.60079 -9.84228 -9.74574 -8.99117 -8.18219 -6.27563 -0.12509 0.42050 1.43037 1.44144 1.57197 1.59369 1.96281 2.42793 2.85034 2.91775 3.15018 3.54464 3.85719 3.98021 4.16008 4.36127 4.45907 4.53139 4.66528 4.73019 4.79642 4.91200 5.07226 5.10997 5.22014 5.30405 5.38089 5.46808 5.66913 5.70841 5.94633 6.07405 6.32813 6.42741 6.63679 6.88936 7.42183 8.92835 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040665 B = 0.005122 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.394117 B = 5464.869778 C = 5668.659250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.540 5.540 3 C 0.206 3.794 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.966 3.034 9 H -0.264 1.264 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.088 3.912 13 C -0.079 4.079 14 C -0.070 4.070 15 C -0.112 4.112 16 C -0.063 4.063 17 C -0.045 4.045 18 C 0.282 3.718 19 N -0.468 5.468 20 C -0.069 4.069 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.011 0.989 24 H 0.011 0.989 25 H -0.037 1.037 26 H 0.264 0.736 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.137 0.863 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -15.914 -1.648 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.264 5.264 3 C 0.080 3.920 4 C -0.560 4.560 5 H 0.081 0.919 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.791 3.209 9 H -0.188 1.188 10 H -0.204 1.204 11 H -0.207 1.207 12 C -0.040 4.040 13 C -0.080 4.080 14 C -0.089 4.089 15 C -0.129 4.129 16 C -0.084 4.084 17 C -0.048 4.048 18 C -0.032 4.032 19 N -0.144 5.144 20 C -0.090 4.090 21 H 0.094 0.906 22 H 0.074 0.926 23 H 0.029 0.971 24 H 0.029 0.971 25 H -0.019 1.019 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.155 0.845 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.131 -16.590 -1.922 16.739 hybrid contribution -0.097 1.664 -0.144 1.673 sum -1.229 -14.926 -2.065 15.118 Atomic orbital electron populations 1.22255 0.87937 1.01113 0.99679 1.62071 1.07970 1.15118 1.41199 1.19425 0.94044 0.83617 0.94953 1.21506 1.34632 0.97423 1.02412 0.91911 1.25863 0.95081 0.98072 1.00492 1.70082 1.39478 1.11879 1.36076 0.85376 0.78062 0.78177 0.79254 1.18777 1.20351 1.20691 1.21096 1.00679 0.90192 0.92020 1.19637 0.94810 0.94802 0.98731 1.21545 0.99407 0.93619 0.94319 1.21402 0.96844 0.95117 0.99556 1.21445 0.92678 1.00167 0.94104 1.15964 0.89977 0.94067 1.04794 1.25926 0.92645 0.92360 0.92275 1.81248 1.12356 1.09768 1.11028 1.21067 0.96144 0.93542 0.98257 0.90602 0.92621 0.97084 0.97121 1.01942 0.92731 0.90052 0.94798 0.84485 0.81687 0.82609 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 8.95 127.69 1.14 2.58 16 2 N -0.54 -22.04 4.74 -931.65 -4.42 -26.46 16 3 C 0.21 10.59 4.72 85.56 0.40 10.99 16 4 C -0.52 -28.90 8.46 25.60 0.22 -28.68 16 5 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 6 C 0.00 0.16 5.46 84.66 0.46 0.62 16 7 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 8 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.09 2.83 5.11 85.56 0.44 3.27 16 13 C -0.08 -2.00 4.88 -19.90 -0.10 -2.09 16 14 C -0.07 -1.43 9.69 22.33 0.22 -1.21 16 15 C -0.11 -1.64 10.03 22.23 0.22 -1.42 16 16 C -0.06 -0.97 9.76 22.54 0.22 -0.75 16 17 C -0.04 -0.91 5.73 -21.36 -0.12 -1.03 16 18 C 0.28 6.68 15.33 88.33 1.35 8.04 16 19 N -0.47 -13.21 18.54 19.00 0.35 -12.86 16 20 C -0.07 -1.60 7.66 22.54 0.17 -1.43 16 21 H 0.08 2.39 6.16 -2.39 -0.01 2.38 16 22 H 0.05 2.29 6.76 -2.38 -0.02 2.27 16 23 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.01 0.58 7.93 -2.39 -0.02 0.57 16 25 H -0.04 -2.09 8.12 -2.39 -0.02 -2.11 16 26 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 27 H 0.08 2.59 7.87 -2.39 -0.02 2.57 16 28 H 0.03 1.09 8.06 -2.39 -0.02 1.07 16 29 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 31 H 0.16 1.54 8.06 -2.92 -0.02 1.52 16 32 H 0.12 2.91 8.03 -2.91 -0.02 2.89 16 Total: -1.00 -64.91 283.90 3.98 -60.93 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: 1.11 Total: -1.12 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 4.63 Total: -11.11 kcal Atomic # 7 Polarization: -90.53 SS G_CDS: -3.78 Total: -94.32 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -64.91 3.98 -60.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.810 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds