Wall clock time and date at job start Sun Mar 29 2020 21:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.50707 * 109.46656 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99768 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00203 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00034 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47238 * 60.00017 * 10 8 6 12 12 H 1.48494 * 109.47094 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46981 * 299.99863 * 10 8 6 14 14 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 15 15 C 1.38384 * 119.92296 * 79.72694 * 14 2 1 16 16 C 1.38335 * 120.30282 * 179.76613 * 15 14 2 17 17 C 1.37970 * 120.15169 * 0.51181 * 16 15 14 18 18 C 1.39610 * 119.84628 * 359.74563 * 17 16 15 19 19 C 1.43202 * 120.15134 * 179.97438 * 18 17 16 20 20 N 5.95835 * 111.52004 * 82.67940 * 2 1 3 21 21 C 1.37923 * 119.92320 * 259.99957 * 14 2 1 22 22 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 24 24 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 25 25 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 26 26 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 27 27 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 28 28 H 0.96997 * 120.00560 * 179.97438 * 9 8 6 29 29 H 1.07995 * 119.84696 * 359.97438 * 15 14 2 30 30 H 1.08004 * 119.92288 * 180.25274 * 16 15 14 31 31 H 1.07999 * 120.07474 * 179.72421 * 17 16 15 32 32 H 1.07999 * 120.07850 * 0.02562 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 1 2.8381 -1.5693 -3.4795 8 6 2.7318 0.1355 -4.7595 9 7 2.4264 1.4113 -4.8528 10 14 3.3584 -0.7869 -6.2582 11 1 2.4372 -1.9093 -6.5695 12 1 3.4219 0.1382 -7.4180 13 1 4.7147 -1.3227 -5.9782 14 6 2.0324 -0.7105 1.2304 15 6 2.0609 -2.0936 1.2657 16 6 2.5250 -2.7537 2.3893 17 6 2.9532 -2.0362 3.4872 18 6 2.9222 -0.6407 3.4605 19 6 3.3645 0.1104 4.5966 20 7 3.7157 0.7063 5.4978 21 6 2.4575 0.0193 2.3209 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.4496 -1.4979 -1.4101 26 1 1.0870 0.6163 -2.5525 27 1 2.7588 1.0464 -2.1182 28 1 2.5275 1.8736 -5.6995 29 1 1.7223 -2.6601 0.4109 30 1 2.5484 -3.8333 2.4086 31 1 3.3111 -2.5530 4.3654 32 1 2.4302 1.0986 2.2939 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037240367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:52 Heat of formation + Delta-G solvation = 44.670881 kcal Electronic energy + Delta-G solvation = -14711.028006 eV Core-core repulsion = 12250.134310 eV Total energy + Delta-G solvation = -2460.893696 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.63158 -36.85083 -35.84976 -32.98570 -31.27097 -31.06557 -28.81367 -26.06661 -24.08278 -23.29445 -21.59280 -20.90902 -18.10353 -16.45724 -16.21201 -15.60160 -14.82543 -14.45440 -14.17988 -13.91110 -13.71361 -13.48636 -13.11254 -12.77715 -12.69532 -12.24442 -11.94596 -11.86843 -11.44585 -11.34221 -11.12859 -10.78482 -10.70920 -10.54981 -9.95708 -9.27061 -8.93379 -8.69084 -8.51499 -7.39862 -6.06960 -4.09237 0.82744 1.36550 2.61257 2.96819 3.31263 3.35791 3.38361 3.84004 3.90381 4.39828 4.77068 4.86382 5.08547 5.22004 5.29384 5.33979 5.46727 5.52138 5.63680 5.77501 5.93439 6.05239 6.18288 6.27144 6.34804 6.46417 6.68870 6.87408 7.18045 7.36227 7.43034 7.72680 8.06992 8.29355 8.52411 8.99282 9.55903 11.03967 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038361 B = 0.004902 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.742292 B = 5710.094192 C = 5822.536215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 H 0.084 0.916 4 N -0.681 5.681 5 C 0.195 3.805 6 C -0.516 4.516 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.899 3.101 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C -0.053 4.053 15 C -0.065 4.065 16 C -0.123 4.123 17 C -0.082 4.082 18 C -0.038 4.038 19 C 0.263 3.737 20 N -0.432 5.432 21 C -0.069 4.069 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.330 0.670 26 H -0.010 1.010 27 H 0.028 0.972 28 H 0.262 0.738 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 -6.723 12.404 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.003 3.997 3 H 0.102 0.898 4 N -0.310 5.310 5 C 0.068 3.932 6 C -0.555 4.555 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.727 3.273 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.054 4.054 15 C -0.084 4.084 16 C -0.141 4.141 17 C -0.102 4.102 18 C -0.042 4.042 19 C -0.052 4.052 20 N -0.108 5.108 21 C -0.090 4.090 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.147 0.853 26 H 0.008 0.992 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.937 -5.542 13.811 15.007 hybrid contribution -0.671 -0.468 -1.476 1.688 sum -2.607 -6.010 12.335 13.967 Atomic orbital electron populations 1.22478 0.96743 1.01976 1.02158 1.20492 0.92302 0.97675 0.89236 0.89801 1.60789 1.55162 1.10527 1.04563 1.19592 0.95446 0.91755 0.86373 1.21127 1.43841 0.96934 0.93569 0.91990 1.24975 0.95567 0.94914 0.99005 1.69941 1.48641 1.09021 1.26086 0.86548 0.79494 0.79418 0.81864 1.20259 1.21362 1.20147 1.19978 0.96917 0.93873 0.94623 1.21270 0.95668 0.94125 0.97301 1.21071 0.99801 1.00156 0.93098 1.21055 0.98586 0.91621 0.98974 1.15921 1.06161 0.92112 0.89966 1.25820 0.93208 0.93227 0.92943 1.81224 1.09731 1.08774 1.11030 1.21042 0.96565 1.00146 0.91268 0.92600 0.92763 0.91734 0.85281 0.99249 0.95364 0.92814 0.85069 0.85233 0.85576 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 9.14 37.16 0.34 -2.05 16 2 C 0.11 1.77 2.78 -68.86 -0.19 1.58 16 3 H 0.08 1.39 7.65 -51.93 -0.40 0.99 16 4 N -0.68 -13.07 5.70 -109.21 -0.62 -13.69 16 5 C 0.19 4.78 5.24 -4.97 -0.03 4.75 16 6 C -0.52 -14.00 9.32 -34.44 -0.32 -14.32 16 7 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 10 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C -0.05 -0.70 4.95 -104.68 -0.52 -1.22 16 15 C -0.06 -0.77 9.32 -39.49 -0.37 -1.14 16 16 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 17 C -0.08 -0.81 9.76 -39.17 -0.38 -1.19 16 18 C -0.04 -0.44 5.73 -106.93 -0.61 -1.05 16 19 C 0.26 3.36 15.33 -22.47 -0.34 3.01 16 20 N -0.43 -6.35 18.54 41.84 0.78 -5.58 16 21 C -0.07 -0.85 9.37 -39.17 -0.37 -1.21 16 22 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.99 7.45 -51.93 -0.39 0.60 16 25 H 0.33 5.93 7.80 -39.29 -0.31 5.63 16 26 H -0.01 -0.27 7.43 -51.93 -0.39 -0.65 16 27 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.13 1.51 7.24 -52.49 -0.38 1.13 16 30 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.45 8.03 -52.49 -0.42 1.03 16 LS Contribution 286.99 15.07 4.32 4.32 Total: -1.00 -29.68 286.99 -7.03 -36.71 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.93 Total: 0.48 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -3.29 Total: -12.97 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.89 Total: -44.65 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.68 -7.03 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.380 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds