Wall clock time and date at job start Sun Mar 29 2020 21:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 N 1.46906 * 109.47125 * 240.00195 * 2 1 3 5 5 C 1.46902 * 110.99573 * 84.99799 * 4 2 1 6 6 C 1.50707 * 109.46656 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00358 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99768 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00203 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00034 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47238 * 60.00017 * 10 8 6 12 12 H 1.48494 * 109.47094 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46981 * 299.99863 * 10 8 6 14 14 C 1.50703 * 109.47440 * 120.00206 * 2 1 3 15 15 C 1.38384 * 119.92296 * 79.72694 * 14 2 1 16 16 C 1.38335 * 120.30282 * 179.76613 * 15 14 2 17 17 C 1.37970 * 120.15169 * 0.51181 * 16 15 14 18 18 C 1.39610 * 119.84628 * 359.74563 * 17 16 15 19 19 C 1.43202 * 120.15134 * 179.97438 * 18 17 16 20 20 N 5.95835 * 111.52004 * 82.67940 * 2 1 3 21 21 C 1.37923 * 119.92320 * 259.99957 * 14 2 1 22 22 H 1.09005 * 109.46664 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46897 * 299.99209 * 1 2 3 24 24 H 1.08994 * 109.47330 * 60.00158 * 1 2 3 25 25 H 1.00896 * 111.00309 * 321.04211 * 4 2 1 26 26 H 1.08990 * 109.47358 * 299.99539 * 5 4 2 27 27 H 1.09004 * 109.47457 * 60.00221 * 5 4 2 28 28 H 0.96997 * 120.00560 * 179.97438 * 9 8 6 29 29 H 1.07995 * 119.84696 * 359.97438 * 15 14 2 30 30 H 1.08004 * 119.92288 * 180.25274 * 16 15 14 31 31 H 1.07999 * 120.07474 * 179.72421 * 17 16 15 32 32 H 1.07999 * 120.07850 * 0.02562 * 21 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0824 0.2227 -2.3469 6 6 2.5884 -0.5214 -3.5558 7 1 2.8381 -1.5693 -3.4795 8 6 2.7318 0.1355 -4.7595 9 7 2.4264 1.4113 -4.8528 10 14 3.3584 -0.7869 -6.2582 11 1 2.4372 -1.9093 -6.5695 12 1 3.4219 0.1382 -7.4180 13 1 4.7147 -1.3227 -5.9782 14 6 2.0324 -0.7105 1.2304 15 6 2.0609 -2.0936 1.2657 16 6 2.5250 -2.7537 2.3893 17 6 2.9532 -2.0362 3.4872 18 6 2.9222 -0.6407 3.4605 19 6 3.3645 0.1104 4.5966 20 7 3.7157 0.7063 5.4978 21 6 2.4575 0.0193 2.3209 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.4496 -1.4979 -1.4101 26 1 1.0870 0.6163 -2.5525 27 1 2.7588 1.0464 -2.1182 28 1 2.5275 1.8736 -5.6995 29 1 1.7223 -2.6601 0.4109 30 1 2.5484 -3.8333 2.4086 31 1 3.3111 -2.5530 4.3654 32 1 2.4302 1.0986 2.2939 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037240367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:52 Heat of formation + Delta-G solvation = 27.000676 kcal Electronic energy + Delta-G solvation = -14711.794244 eV Core-core repulsion = 12250.134310 eV Total energy + Delta-G solvation = -2461.659934 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60221 -38.06997 -37.10035 -34.89713 -32.51995 -32.15711 -30.06817 -27.89446 -25.05136 -24.64538 -23.17737 -22.06741 -19.27826 -18.28741 -17.20629 -16.84659 -16.36537 -15.91985 -15.33033 -15.15646 -14.99379 -14.61950 -14.18803 -14.10034 -13.88344 -13.73285 -13.40586 -13.12724 -12.92792 -12.64926 -12.54642 -12.38563 -12.13695 -11.96156 -11.66695 -11.23607 -10.62193 -9.82106 -9.64929 -9.03296 -8.18214 -6.28690 -0.09494 0.47905 1.44867 1.47819 1.55481 1.60169 1.98984 2.43472 2.86568 2.97596 3.15782 3.61378 3.92663 4.02510 4.23181 4.30664 4.38647 4.48557 4.63540 4.78679 4.93349 4.98272 5.09636 5.15097 5.28252 5.34929 5.42956 5.53084 5.62858 5.73945 5.98523 6.07884 6.43701 6.50484 6.78452 6.96060 7.42312 8.92836 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038361 B = 0.004902 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.742292 B = 5710.094192 C = 5822.536215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 H 0.064 0.936 4 N -0.677 5.677 5 C 0.210 3.790 6 C -0.533 4.533 7 H 0.067 0.933 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.969 3.031 11 H -0.264 1.264 12 H -0.287 1.287 13 H -0.270 1.270 14 C -0.070 4.070 15 C -0.070 4.070 16 C -0.114 4.114 17 C -0.068 4.068 18 C -0.044 4.044 19 C 0.283 3.717 20 N -0.470 5.470 21 C -0.074 4.074 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.040 0.960 25 H 0.339 0.661 26 H -0.033 1.033 27 H -0.004 1.004 28 H 0.264 0.736 29 H 0.134 0.866 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.986 -9.142 13.015 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 H 0.082 0.918 4 N -0.307 5.307 5 C 0.082 3.918 6 C -0.571 4.571 7 H 0.085 0.915 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.794 3.206 11 H -0.189 1.189 12 H -0.212 1.212 13 H -0.195 1.195 14 C -0.070 4.070 15 C -0.089 4.089 16 C -0.131 4.131 17 C -0.088 4.088 18 C -0.048 4.048 19 C -0.031 4.031 20 N -0.146 5.146 21 C -0.095 4.095 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.157 0.843 26 H -0.015 1.015 27 H 0.014 0.986 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.181 0.819 31 H 0.172 0.828 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.781 -7.979 14.449 16.601 hybrid contribution -0.736 0.264 -1.592 1.774 sum -2.517 -7.715 12.857 15.204 Atomic orbital electron populations 1.22376 0.95264 1.02941 1.01945 1.20468 0.93602 0.96753 0.88778 0.91764 1.60627 1.56295 1.10009 1.03810 1.19193 0.93152 0.91525 0.87891 1.21546 1.43621 0.97348 0.94600 0.91466 1.25911 0.95691 0.95715 1.02332 1.70080 1.49857 1.10725 1.26908 0.85433 0.79142 0.78252 0.77760 1.18914 1.21224 1.19473 1.19693 0.98972 0.94618 0.93755 1.21420 0.95679 0.93425 0.98347 1.21385 0.98164 1.01742 0.91833 1.21410 0.96776 0.90761 0.99874 1.15947 1.06790 0.92880 0.89174 1.25937 0.92187 0.92435 0.92540 1.81247 1.11191 1.09794 1.12327 1.21034 0.96655 1.00353 0.91431 0.91008 0.90719 0.94112 0.84305 1.01505 0.98622 0.92773 0.84783 0.81939 0.82790 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.51 9.14 71.98 0.66 -3.85 16 2 C 0.11 3.59 2.78 44.17 0.12 3.71 16 3 H 0.06 2.24 7.65 -2.39 -0.02 2.22 16 4 N -0.68 -26.25 5.70 -499.44 -2.85 -29.09 16 5 C 0.21 10.69 5.24 85.56 0.45 11.14 16 6 C -0.53 -29.21 9.32 25.60 0.24 -28.97 16 7 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.94 -55.61 13.29 21.45 0.28 -55.32 16 10 Si 0.97 43.19 29.54 68.60 2.03 45.21 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 14 C -0.07 -1.77 4.95 -19.90 -0.10 -1.87 16 15 C -0.07 -1.48 9.32 22.33 0.21 -1.27 16 16 C -0.11 -1.79 10.03 22.23 0.22 -1.57 16 17 C -0.07 -1.10 9.76 22.54 0.22 -0.88 16 18 C -0.04 -0.93 5.73 -21.36 -0.12 -1.05 16 19 C 0.28 6.83 15.33 88.33 1.35 8.19 16 20 N -0.47 -13.42 18.54 19.00 0.35 -13.07 16 21 C -0.07 -1.73 9.37 22.54 0.21 -1.52 16 22 H 0.07 1.70 8.13 -2.38 -0.02 1.68 16 23 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.04 1.28 7.45 -2.39 -0.02 1.26 16 25 H 0.34 12.05 7.80 -89.70 -0.70 11.35 16 26 H -0.03 -1.78 7.43 -2.39 -0.02 -1.80 16 27 H 0.00 -0.25 8.06 -2.38 -0.02 -0.27 16 28 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.13 2.75 7.24 -2.91 -0.02 2.73 16 30 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 31 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.13 2.92 8.03 -2.91 -0.02 2.90 16 Total: -1.00 -64.67 286.99 4.17 -60.50 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.42 Total: 9.16 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 3.93 Total: -17.39 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -2.21 Total: -97.48 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -64.67 4.17 -60.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037240367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.501 kcal (2) G-P(sol) polarization free energy of solvation -64.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds