Wall clock time and date at job start Sun Mar 29 2020 21:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47107 * 2 1 4 4 C 1.50704 * 109.46809 * 240.00485 * 2 1 3 5 5 H 1.07998 * 119.99735 * 239.99916 * 4 2 1 6 6 C 1.37874 * 119.99895 * 59.99824 * 4 2 1 7 7 N 1.31511 * 120.00550 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47181 * 89.99676 * 8 6 4 10 10 H 1.48498 * 109.47118 * 210.00073 * 8 6 4 11 11 H 1.48499 * 109.46885 * 330.00061 * 8 6 4 12 12 N 1.46897 * 109.47337 * 120.00242 * 2 1 3 13 13 C 1.46901 * 111.00142 * 274.99856 * 12 2 1 14 14 C 1.50696 * 109.46885 * 179.97438 * 13 12 2 15 15 C 1.38365 * 119.84509 * 90.00234 * 14 13 12 16 16 C 1.37947 * 120.14940 * 179.97438 * 15 14 13 17 17 C 1.39629 * 119.84839 * 359.97438 * 16 15 14 18 18 C 1.43205 * 120.15217 * 180.02562 * 17 16 15 19 19 N 8.91693 * 108.62876 * 111.94617 * 2 1 3 20 20 C 1.39630 * 119.69955 * 0.27680 * 17 16 15 21 21 C 1.37952 * 119.84588 * 359.42138 * 20 17 16 22 22 H 1.09007 * 109.47029 * 299.99798 * 1 2 3 23 23 H 1.08995 * 109.47573 * 59.99358 * 1 2 3 24 24 H 1.09002 * 109.47107 * 179.97438 * 1 2 3 25 25 H 0.96994 * 120.00219 * 180.02562 * 7 6 4 26 26 H 1.00904 * 110.99744 * 38.95736 * 12 2 1 27 27 H 1.09000 * 109.46794 * 60.00162 * 13 12 2 28 28 H 1.08992 * 109.47035 * 299.99855 * 13 12 2 29 29 H 1.07993 * 119.92724 * 359.97438 * 15 14 13 30 30 H 1.08003 * 120.07687 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.08232 * 179.69881 * 20 17 16 32 32 H 1.08002 * 119.92853 * 180.27179 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3425 -2.1614 -4.4120 10 1 2.4863 -0.1411 -5.1124 11 1 3.6290 -1.7581 -3.7124 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5875 -0.5220 3.5559 15 6 3.9456 -0.5727 3.8158 16 6 4.4146 -1.2520 4.9210 17 6 3.5154 -1.8889 5.7786 18 6 3.9951 -2.5954 6.9281 19 7 4.3784 -3.1580 7.8375 20 6 2.1466 -1.8381 5.5074 21 6 1.6908 -1.1500 4.4020 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1616 -3.4843 26 1 1.4496 -1.4980 1.4099 27 1 1.0872 0.6162 2.5525 28 1 2.7589 1.0460 2.1182 29 1 4.6399 -0.0794 3.1519 30 1 5.4749 -1.2912 5.1225 31 1 1.4460 -2.3326 6.1639 32 1 0.6320 -1.1062 4.1934 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037749129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:25 Heat of formation + Delta-G solvation = 47.731012 kcal Electronic energy + Delta-G solvation = -14634.046906 eV Core-core repulsion = 12173.285907 eV Total energy + Delta-G solvation = -2460.760999 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.55746 -36.78708 -35.85801 -33.06635 -31.34372 -31.11181 -28.36624 -25.34933 -24.91414 -22.78080 -21.74786 -20.24715 -18.95016 -16.60536 -15.65435 -15.40868 -14.77860 -14.59208 -14.27180 -13.99580 -13.57710 -13.45724 -13.15111 -12.71874 -12.63639 -12.26885 -11.72733 -11.66367 -11.29685 -11.08339 -10.92057 -10.76803 -10.50953 -10.20085 -9.94460 -9.07680 -9.05027 -8.75030 -8.39894 -7.33395 -6.02121 -4.05619 0.73917 1.32744 2.56075 2.89456 3.30974 3.37691 3.42204 3.80331 3.84322 4.42062 4.78864 4.81670 4.92574 5.29768 5.33212 5.38526 5.49691 5.69914 5.78405 6.02591 6.13438 6.21386 6.25183 6.62059 6.66207 6.78334 6.81481 7.02397 7.27856 7.37603 7.68830 7.83365 8.20808 8.44327 8.54001 9.01676 9.60082 11.04860 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047269 B = 0.004639 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.211809 B = 6033.781706 C = 6319.730813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.087 3.913 14 C -0.033 4.033 15 C -0.101 4.101 16 C -0.070 4.070 17 C -0.047 4.047 18 C 0.263 3.737 19 N -0.433 5.433 20 C -0.070 4.070 21 C -0.119 4.119 22 H 0.005 0.995 23 H 0.089 0.911 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.327 0.673 27 H 0.033 0.967 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 -1.185 12.035 12.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.307 5.307 13 C -0.042 4.042 14 C -0.034 4.034 15 C -0.119 4.119 16 C -0.091 4.091 17 C -0.051 4.051 18 C -0.052 4.052 19 N -0.109 5.109 20 C -0.090 4.090 21 C -0.138 4.138 22 H 0.024 0.976 23 H 0.108 0.892 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.144 0.856 27 H 0.051 0.949 28 H 0.096 0.904 29 H 0.154 0.846 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.755 -1.844 13.120 13.532 hybrid contribution -0.906 -0.127 -1.044 1.388 sum 1.850 -1.970 12.075 12.374 Atomic orbital electron populations 1.22446 1.00638 0.99284 1.00580 1.19215 0.89661 0.94501 0.86286 0.94701 1.21145 1.30319 1.12490 0.89509 0.91872 1.24944 0.95319 0.95171 0.99065 1.69872 1.37316 1.23145 1.23422 0.86505 0.79277 0.79239 0.82422 1.20841 1.21378 1.19834 1.60913 1.58322 1.08770 1.02649 1.21020 0.99109 0.95399 0.88662 1.20393 0.93470 0.94621 0.94904 1.21059 0.95459 0.99035 0.96378 1.21157 0.99113 0.95347 0.93460 1.15966 0.94045 1.02718 0.92363 1.25827 0.93330 0.93106 0.92931 1.81225 1.08177 1.10111 1.11362 1.21082 0.93221 0.97551 0.97195 1.21050 1.00251 0.98026 0.94470 0.97572 0.89191 0.95272 0.93028 0.85610 0.94894 0.90376 0.84594 0.85274 0.85376 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 8.94 37.16 0.33 -3.52 16 2 C 0.21 4.97 2.57 -68.86 -0.18 4.80 16 3 H 0.04 0.90 7.80 -51.93 -0.40 0.50 16 4 C -0.50 -13.20 8.84 -34.44 -0.30 -13.50 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.50 5.30 -17.82 -0.09 1.40 16 7 N -0.90 -24.94 11.32 55.43 0.63 -24.32 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 N -0.68 -13.06 6.22 -109.22 -0.68 -13.74 16 13 C 0.09 1.35 5.60 -4.98 -0.03 1.32 16 14 C -0.03 -0.41 5.40 -104.53 -0.56 -0.98 16 15 C -0.10 -1.17 9.68 -39.64 -0.38 -1.56 16 16 C -0.07 -0.73 9.76 -39.17 -0.38 -1.11 16 17 C -0.05 -0.51 5.73 -106.93 -0.61 -1.12 16 18 C 0.26 3.15 15.33 -22.47 -0.34 2.80 16 19 N -0.43 -6.05 18.54 41.83 0.78 -5.27 16 20 C -0.07 -0.70 9.76 -39.17 -0.38 -1.08 16 21 C -0.12 -1.32 9.68 -39.64 -0.38 -1.70 16 22 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16 23 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 24 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.33 6.04 8.46 -39.29 -0.33 5.71 16 27 H 0.03 0.50 7.37 -51.93 -0.38 0.12 16 28 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 285.17 15.07 4.30 4.30 Total: -1.00 -28.37 285.17 -7.22 -35.59 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -3.90 Total: 1.75 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -3.33 Total: -14.25 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.72 Total: -43.33 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.37 -7.22 -35.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037749129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.318 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds