Wall clock time and date at job start Sun Mar 29 2020 21:45:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 109.47107 * 2 1
4 4 C 1.50704 * 109.46809 * 240.00485 * 2 1 3
5 5 H 1.07998 * 119.99735 * 239.99916 * 4 2 1
6 6 C 1.37874 * 119.99895 * 59.99824 * 4 2 1
7 7 N 1.31511 * 120.00550 * 0.02562 * 6 4 2
8 8 Si 1.86805 * 119.99899 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47181 * 89.99676 * 8 6 4
10 10 H 1.48498 * 109.47118 * 210.00073 * 8 6 4
11 11 H 1.48499 * 109.46885 * 330.00061 * 8 6 4
12 12 N 1.46897 * 109.47337 * 120.00242 * 2 1 3
13 13 C 1.46901 * 111.00142 * 274.99856 * 12 2 1
14 14 C 1.50696 * 109.46885 * 179.97438 * 13 12 2
15 15 C 1.38365 * 119.84509 * 90.00234 * 14 13 12
16 16 C 1.37947 * 120.14940 * 179.97438 * 15 14 13
17 17 C 1.39629 * 119.84839 * 359.97438 * 16 15 14
18 18 C 1.43205 * 120.15217 * 180.02562 * 17 16 15
19 19 N 8.91693 * 108.62876 * 111.94617 * 2 1 3
20 20 C 1.39630 * 119.69955 * 0.27680 * 17 16 15
21 21 C 1.37952 * 119.84588 * 359.42138 * 20 17 16
22 22 H 1.09007 * 109.47029 * 299.99798 * 1 2 3
23 23 H 1.08995 * 109.47573 * 59.99358 * 1 2 3
24 24 H 1.09002 * 109.47107 * 179.97438 * 1 2 3
25 25 H 0.96994 * 120.00219 * 180.02562 * 7 6 4
26 26 H 1.00904 * 110.99744 * 38.95736 * 12 2 1
27 27 H 1.09000 * 109.46794 * 60.00162 * 13 12 2
28 28 H 1.08992 * 109.47035 * 299.99855 * 13 12 2
29 29 H 1.07993 * 119.92724 * 359.97438 * 15 14 13
30 30 H 1.08003 * 120.07687 * 179.97438 * 16 15 14
31 31 H 1.07999 * 120.08232 * 179.69881 * 20 17 16
32 32 H 1.08002 * 119.92853 * 180.27179 * 21 20 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2306
5 1 2.6532 -1.5884 -1.1315
6 6 1.6991 -0.2392 -2.4828
7 7 0.9435 0.8304 -2.6034
8 14 2.3211 -1.1201 -4.0081
9 1 1.3425 -2.1614 -4.4120
10 1 2.4863 -0.1411 -5.1124
11 1 3.6290 -1.7581 -3.7124
12 7 2.0197 -0.6925 1.1994
13 6 2.0826 0.2225 2.3469
14 6 2.5875 -0.5220 3.5559
15 6 3.9456 -0.5727 3.8158
16 6 4.4146 -1.2520 4.9210
17 6 3.5154 -1.8889 5.7786
18 6 3.9951 -2.5954 6.9281
19 7 4.3784 -3.1580 7.8375
20 6 2.1466 -1.8381 5.5074
21 6 1.6908 -1.1500 4.4020
22 1 -0.3633 0.5138 0.8901
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3633 -1.0277 -0.0005
25 1 0.7088 1.1616 -3.4843
26 1 1.4496 -1.4980 1.4099
27 1 1.0872 0.6162 2.5525
28 1 2.7589 1.0460 2.1182
29 1 4.6399 -0.0794 3.1519
30 1 5.4749 -1.2912 5.1225
31 1 1.4460 -2.3326 6.1639
32 1 0.6320 -1.1062 4.1934
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000037749129.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:45:25
Heat of formation + Delta-G solvation = 47.731012 kcal
Electronic energy + Delta-G solvation = -14634.046906 eV
Core-core repulsion = 12173.285907 eV
Total energy + Delta-G solvation = -2460.760999 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.55746 -36.78708 -35.85801 -33.06635 -31.34372 -31.11181 -28.36624 -25.34933
-24.91414 -22.78080 -21.74786 -20.24715 -18.95016 -16.60536 -15.65435 -15.40868
-14.77860 -14.59208 -14.27180 -13.99580 -13.57710 -13.45724 -13.15111 -12.71874
-12.63639 -12.26885 -11.72733 -11.66367 -11.29685 -11.08339 -10.92057 -10.76803
-10.50953 -10.20085 -9.94460 -9.07680 -9.05027 -8.75030 -8.39894 -7.33395
-6.02121 -4.05619 0.73917 1.32744 2.56075 2.89456 3.30974 3.37691
3.42204 3.80331 3.84322 4.42062 4.78864 4.81670 4.92574 5.29768
5.33212 5.38526 5.49691 5.69914 5.78405 6.02591 6.13438 6.21386
6.25183 6.62059 6.66207 6.78334 6.81481 7.02397 7.27856 7.37603
7.68830 7.83365 8.20808 8.44327 8.54001 9.01676 9.60082 11.04860
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.047269 B = 0.004639 C = 0.004430
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 592.211809 B = 6033.781706 C = 6319.730813
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.211 3.789
3 H 0.035 0.965
4 C -0.496 4.496
5 H 0.063 0.937
6 C 0.056 3.944
7 N -0.898 5.898
8 Si 0.897 3.103
9 H -0.282 1.282
10 H -0.288 1.288
11 H -0.273 1.273
12 N -0.677 5.677
13 C 0.087 3.913
14 C -0.033 4.033
15 C -0.101 4.101
16 C -0.070 4.070
17 C -0.047 4.047
18 C 0.263 3.737
19 N -0.433 5.433
20 C -0.070 4.070
21 C -0.119 4.119
22 H 0.005 0.995
23 H 0.089 0.911
24 H 0.028 0.972
25 H 0.260 0.740
26 H 0.327 0.673
27 H 0.033 0.967
28 H 0.078 0.922
29 H 0.136 0.864
30 H 0.129 0.871
31 H 0.128 0.872
32 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.563 -1.185 12.035 12.194
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.103 3.897
3 H 0.053 0.947
4 C -0.535 4.535
5 H 0.081 0.919
6 C -0.145 4.145
7 N -0.538 5.538
8 Si 0.726 3.274
9 H -0.208 1.208
10 H -0.214 1.214
11 H -0.198 1.198
12 N -0.307 5.307
13 C -0.042 4.042
14 C -0.034 4.034
15 C -0.119 4.119
16 C -0.091 4.091
17 C -0.051 4.051
18 C -0.052 4.052
19 N -0.109 5.109
20 C -0.090 4.090
21 C -0.138 4.138
22 H 0.024 0.976
23 H 0.108 0.892
24 H 0.047 0.953
25 H 0.070 0.930
26 H 0.144 0.856
27 H 0.051 0.949
28 H 0.096 0.904
29 H 0.154 0.846
30 H 0.147 0.853
31 H 0.146 0.854
32 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges 2.755 -1.844 13.120 13.532
hybrid contribution -0.906 -0.127 -1.044 1.388
sum 1.850 -1.970 12.075 12.374
Atomic orbital electron populations
1.22446 1.00638 0.99284 1.00580 1.19215 0.89661 0.94501 0.86286
0.94701 1.21145 1.30319 1.12490 0.89509 0.91872 1.24944 0.95319
0.95171 0.99065 1.69872 1.37316 1.23145 1.23422 0.86505 0.79277
0.79239 0.82422 1.20841 1.21378 1.19834 1.60913 1.58322 1.08770
1.02649 1.21020 0.99109 0.95399 0.88662 1.20393 0.93470 0.94621
0.94904 1.21059 0.95459 0.99035 0.96378 1.21157 0.99113 0.95347
0.93460 1.15966 0.94045 1.02718 0.92363 1.25827 0.93330 0.93106
0.92931 1.81225 1.08177 1.10111 1.11362 1.21082 0.93221 0.97551
0.97195 1.21050 1.00251 0.98026 0.94470 0.97572 0.89191 0.95272
0.93028 0.85610 0.94894 0.90376 0.84594 0.85274 0.85376 0.85173
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.85 8.94 37.16 0.33 -3.52 16
2 C 0.21 4.97 2.57 -68.86 -0.18 4.80 16
3 H 0.04 0.90 7.80 -51.93 -0.40 0.50 16
4 C -0.50 -13.20 8.84 -34.44 -0.30 -13.50 16
5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16
6 C 0.06 1.50 5.30 -17.82 -0.09 1.40 16
7 N -0.90 -24.94 11.32 55.43 0.63 -24.32 16
8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16
9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16
10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
12 N -0.68 -13.06 6.22 -109.22 -0.68 -13.74 16
13 C 0.09 1.35 5.60 -4.98 -0.03 1.32 16
14 C -0.03 -0.41 5.40 -104.53 -0.56 -0.98 16
15 C -0.10 -1.17 9.68 -39.64 -0.38 -1.56 16
16 C -0.07 -0.73 9.76 -39.17 -0.38 -1.11 16
17 C -0.05 -0.51 5.73 -106.93 -0.61 -1.12 16
18 C 0.26 3.15 15.33 -22.47 -0.34 2.80 16
19 N -0.43 -6.05 18.54 41.83 0.78 -5.27 16
20 C -0.07 -0.70 9.76 -39.17 -0.38 -1.08 16
21 C -0.12 -1.32 9.68 -39.64 -0.38 -1.70 16
22 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16
23 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16
24 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16
25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16
26 H 0.33 6.04 8.46 -39.29 -0.33 5.71 16
27 H 0.03 0.50 7.37 -51.93 -0.38 0.12 16
28 H 0.08 1.23 8.00 -51.93 -0.42 0.81 16
29 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16
30 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16
31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16
32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16
LS Contribution 285.17 15.07 4.30 4.30
Total: -1.00 -28.37 285.17 -7.22 -35.59
By element:
Atomic # 1 Polarization: 5.65 SS G_CDS: -3.90 Total: 1.75 kcal
Atomic # 6 Polarization: -10.92 SS G_CDS: -3.33 Total: -14.25 kcal
Atomic # 7 Polarization: -44.05 SS G_CDS: 0.72 Total: -43.33 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -28.37 -7.22 -35.59 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000037749129.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.318 kcal
(2) G-P(sol) polarization free energy of solvation -28.365 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.953 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.587 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.731 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds