Wall clock time and date at job start Sun Mar 29 2020 21:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47107 * 2 1 4 4 C 1.50704 * 109.46809 * 240.00485 * 2 1 3 5 5 H 1.07998 * 119.99735 * 239.99916 * 4 2 1 6 6 C 1.37874 * 119.99895 * 59.99824 * 4 2 1 7 7 N 1.31511 * 120.00550 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47181 * 89.99676 * 8 6 4 10 10 H 1.48498 * 109.47118 * 210.00073 * 8 6 4 11 11 H 1.48499 * 109.46885 * 330.00061 * 8 6 4 12 12 N 1.46897 * 109.47337 * 120.00242 * 2 1 3 13 13 C 1.46901 * 111.00142 * 274.99856 * 12 2 1 14 14 C 1.50696 * 109.46885 * 179.97438 * 13 12 2 15 15 C 1.38365 * 119.84509 * 90.00234 * 14 13 12 16 16 C 1.37947 * 120.14940 * 179.97438 * 15 14 13 17 17 C 1.39629 * 119.84839 * 359.97438 * 16 15 14 18 18 C 1.43205 * 120.15217 * 180.02562 * 17 16 15 19 19 N 8.91693 * 108.62876 * 111.94617 * 2 1 3 20 20 C 1.39630 * 119.69955 * 0.27680 * 17 16 15 21 21 C 1.37952 * 119.84588 * 359.42138 * 20 17 16 22 22 H 1.09007 * 109.47029 * 299.99798 * 1 2 3 23 23 H 1.08995 * 109.47573 * 59.99358 * 1 2 3 24 24 H 1.09002 * 109.47107 * 179.97438 * 1 2 3 25 25 H 0.96994 * 120.00219 * 180.02562 * 7 6 4 26 26 H 1.00904 * 110.99744 * 38.95736 * 12 2 1 27 27 H 1.09000 * 109.46794 * 60.00162 * 13 12 2 28 28 H 1.08992 * 109.47035 * 299.99855 * 13 12 2 29 29 H 1.07993 * 119.92724 * 359.97438 * 15 14 13 30 30 H 1.08003 * 120.07687 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.08232 * 179.69881 * 20 17 16 32 32 H 1.08002 * 119.92853 * 180.27179 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3211 -1.1201 -4.0081 9 1 1.3425 -2.1614 -4.4120 10 1 2.4863 -0.1411 -5.1124 11 1 3.6290 -1.7581 -3.7124 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5875 -0.5220 3.5559 15 6 3.9456 -0.5727 3.8158 16 6 4.4146 -1.2520 4.9210 17 6 3.5154 -1.8889 5.7786 18 6 3.9951 -2.5954 6.9281 19 7 4.3784 -3.1580 7.8375 20 6 2.1466 -1.8381 5.5074 21 6 1.6908 -1.1500 4.4020 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7088 1.1616 -3.4843 26 1 1.4496 -1.4980 1.4099 27 1 1.0872 0.6162 2.5525 28 1 2.7589 1.0460 2.1182 29 1 4.6399 -0.0794 3.1519 30 1 5.4749 -1.2912 5.1225 31 1 1.4460 -2.3326 6.1639 32 1 0.6320 -1.1062 4.1934 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037749129.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:24 Heat of formation + Delta-G solvation = 31.452457 kcal Electronic energy + Delta-G solvation = -14634.752797 eV Core-core repulsion = 12173.285907 eV Total energy + Delta-G solvation = -2461.466890 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.47586 -38.01400 -37.24285 -34.72876 -32.76778 -31.95656 -29.90042 -27.20961 -26.33340 -23.63346 -22.87483 -22.04828 -19.83419 -18.43816 -16.89918 -16.64983 -16.39656 -15.71781 -15.41790 -15.04747 -14.95898 -14.66175 -14.32384 -13.95793 -13.79991 -13.61957 -13.30382 -13.02567 -12.83343 -12.66879 -12.46675 -12.20221 -12.11543 -11.88152 -11.71435 -10.98972 -10.44309 -9.88448 -9.72843 -8.90087 -8.05682 -6.16235 -0.17267 0.49536 1.46069 1.47581 1.57798 1.61587 1.94998 2.47904 2.88079 2.94466 3.23173 3.77655 3.93763 4.04115 4.10883 4.45010 4.48404 4.73613 4.77151 4.82063 4.95366 4.95894 5.14604 5.15873 5.32701 5.39219 5.46633 5.72825 5.76373 5.87301 5.93460 6.32354 6.44476 6.68161 6.87338 6.99633 7.53923 8.99400 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.047269 B = 0.004639 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.211809 B = 6033.781706 C = 6319.730813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.513 4.513 5 H 0.055 0.945 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.680 5.680 13 C 0.092 3.908 14 C -0.046 4.046 15 C -0.108 4.108 16 C -0.063 4.063 17 C -0.048 4.048 18 C 0.284 3.716 19 N -0.469 5.469 20 C -0.061 4.061 21 C -0.118 4.118 22 H 0.030 0.970 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.260 0.740 26 H 0.333 0.667 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.137 0.863 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 -1.986 12.845 13.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.024 0.976 4 C -0.552 4.552 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.310 5.310 13 C -0.037 4.037 14 C -0.047 4.047 15 C -0.127 4.127 16 C -0.084 4.084 17 C -0.052 4.052 18 C -0.030 4.030 19 N -0.145 5.145 20 C -0.081 4.081 21 C -0.136 4.136 22 H 0.048 0.952 23 H 0.078 0.922 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.151 0.849 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.820 -2.652 13.949 14.476 hybrid contribution -0.913 0.140 -1.232 1.540 sum 1.907 -2.511 12.717 13.102 Atomic orbital electron populations 1.22252 0.99920 0.99323 1.00245 1.18955 0.90088 0.92890 0.87396 0.97585 1.21475 1.30245 1.12391 0.91080 0.92710 1.25667 0.95561 0.95853 1.01772 1.69996 1.38172 1.24233 1.23903 0.85576 0.78809 0.78213 0.79115 1.20289 1.21188 1.19528 1.60721 1.58060 1.09368 1.02878 1.20956 0.99380 0.94904 0.88444 1.20195 0.94285 0.95764 0.94473 1.21111 0.95146 0.99436 0.96961 1.21303 1.00157 0.94325 0.92582 1.16043 0.94531 1.02659 0.91950 1.25876 0.92346 0.92257 0.92495 1.81257 1.09329 1.11385 1.12531 1.21297 0.93290 0.96675 0.96868 1.21164 1.00683 0.97524 0.94272 0.95153 0.92183 0.94905 0.93088 0.84933 0.94391 0.91250 0.84532 0.83352 0.83034 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.11 8.94 71.98 0.64 -6.47 16 2 C 0.22 10.22 2.57 44.17 0.11 10.33 16 3 H 0.01 0.33 7.80 -2.39 -0.02 0.31 16 4 C -0.51 -27.46 8.84 25.60 0.23 -27.24 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -51.82 11.32 21.45 0.24 -51.57 16 8 Si 0.96 42.97 29.54 68.60 2.03 44.99 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 N -0.68 -25.87 6.22 -499.47 -3.11 -28.97 16 13 C 0.09 2.77 5.60 85.56 0.48 3.25 16 14 C -0.05 -1.09 5.40 -19.81 -0.11 -1.20 16 15 C -0.11 -2.33 9.68 22.23 0.22 -2.12 16 16 C -0.06 -1.16 9.76 22.54 0.22 -0.94 16 17 C -0.05 -0.90 5.73 -21.36 -0.12 -1.03 16 18 C 0.28 6.18 15.33 88.33 1.35 7.54 16 19 N -0.47 -12.36 18.54 19.00 0.35 -12.01 16 20 C -0.06 -1.04 9.76 22.54 0.22 -0.82 16 21 C -0.12 -2.29 9.68 22.23 0.22 -2.08 16 22 H 0.03 1.17 7.45 -2.38 -0.02 1.15 16 23 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 24 H 0.03 1.40 8.13 -2.39 -0.02 1.38 16 25 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.33 11.92 8.46 -89.69 -0.76 11.16 16 27 H 0.04 1.11 7.37 -2.39 -0.02 1.09 16 28 H 0.07 2.19 8.00 -2.39 -0.02 2.17 16 29 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 30 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -60.12 285.17 3.79 -56.34 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.37 Total: 11.03 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 3.91 Total: -19.80 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -2.51 Total: -92.56 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -60.12 3.79 -56.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037749129.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.789 kcal (2) G-P(sol) polarization free energy of solvation -60.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds