Wall clock time and date at job start Sun Mar 29 2020 21:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39652 * 120.14725 * 260.27863 * 3 2 1 5 5 C 1.37931 * 119.84545 * 179.72103 * 4 3 2 6 6 C 1.38387 * 120.14776 * 0.57637 * 5 4 3 7 7 C 1.38342 * 120.30616 * 359.68028 * 6 5 4 8 8 C 1.50696 * 119.92571 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46839 * 270.02094 * 8 7 6 10 10 C 1.46906 * 110.99777 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46802 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47120 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99608 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00085 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00281 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99793 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47012 * 60.00064 * 16 14 12 18 18 H 1.48503 * 109.47019 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47221 * 299.99583 * 16 14 12 20 20 C 1.37967 * 120.14964 * 0.03915 * 7 6 5 21 21 H 1.08004 * 120.07835 * 359.97438 * 4 3 2 22 22 H 1.07998 * 119.92387 * 180.27808 * 5 4 3 23 23 H 1.08001 * 119.84964 * 179.69650 * 6 5 4 24 24 H 1.09000 * 109.47242 * 30.01456 * 8 7 6 25 25 H 1.09003 * 109.47479 * 150.02051 * 8 7 6 26 26 H 1.00897 * 111.00631 * 56.04207 * 9 8 7 27 27 H 1.08994 * 109.46923 * 299.99135 * 10 9 8 28 28 H 1.09000 * 109.47229 * 60.00193 * 10 9 8 29 29 H 1.09007 * 109.46965 * 299.99488 * 11 10 9 30 30 H 1.09000 * 109.47425 * 59.99533 * 11 10 9 31 31 H 0.96993 * 120.00491 * 180.02562 * 15 14 12 32 32 H 1.08003 * 120.07671 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.2049 1.1903 5 6 4.6485 0.1985 1.1841 6 6 5.3374 0.0023 0.0000 7 6 4.6490 -0.1953 -1.1836 8 6 5.4077 -0.4088 -2.4680 9 7 5.6538 0.8881 -3.1126 10 6 6.3927 0.7187 -4.3710 11 6 6.6290 2.0879 -5.0118 12 6 7.3864 1.9141 -6.3030 13 1 7.6711 0.9260 -6.6332 14 6 7.7167 3.0166 -7.0622 15 7 7.3705 4.2198 -6.6598 16 14 8.6562 2.8012 -8.6624 17 1 7.8669 1.9509 -9.5892 18 1 8.8855 4.1300 -9.2845 19 1 9.9626 2.1517 -8.3858 20 6 3.2693 -0.1971 -1.1908 21 1 2.7328 0.3633 2.1142 22 1 5.1921 0.3518 2.1046 23 1 6.4174 0.0031 -0.0001 24 1 6.3598 -0.8932 -2.2513 25 1 4.8219 -1.0409 -3.1354 26 1 6.1396 1.5155 -2.4893 27 1 7.3516 0.2420 -4.1679 28 1 5.8133 0.0946 -5.0513 29 1 5.6698 2.5643 -5.2150 30 1 7.2081 2.7124 -4.3316 31 1 7.6025 4.9954 -7.1941 32 1 2.7331 -0.3519 -2.1154 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037749384.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:53 Heat of formation + Delta-G solvation = 40.510482 kcal Electronic energy + Delta-G solvation = -14243.308483 eV Core-core repulsion = 11782.234378 eV Total energy + Delta-G solvation = -2461.074105 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.73107 -36.77892 -35.86668 -33.23897 -31.74101 -31.44301 -29.02067 -25.55719 -24.06001 -23.38097 -21.72579 -20.59937 -18.37133 -16.50814 -16.33010 -15.97398 -15.11040 -14.49265 -14.44703 -14.24017 -13.87163 -13.65173 -13.25279 -12.99963 -12.55196 -12.37889 -12.15545 -12.04996 -11.59371 -11.18465 -11.02069 -10.92222 -10.57584 -10.03555 -9.48441 -9.23341 -9.13134 -8.95229 -8.36860 -7.90497 -6.01218 -4.04286 0.61351 1.13808 2.51944 2.79408 3.32458 3.37170 3.39153 3.67298 3.73729 4.42334 4.57307 4.66310 4.83006 4.96614 5.12282 5.17954 5.34720 5.39157 5.60628 5.75318 5.84020 6.08322 6.11491 6.26969 6.30711 6.41540 6.62847 6.92883 7.33073 7.38430 7.68475 7.76990 7.89465 8.05198 8.40596 9.02809 9.59688 11.10113 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042806 B = 0.003963 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.962814 B = 7063.589254 C = 7333.710040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.259 3.741 3 C -0.035 4.035 4 C -0.076 4.076 5 C -0.121 4.121 6 C -0.084 4.084 7 C -0.074 4.074 8 C 0.093 3.907 9 N -0.687 5.687 10 C 0.065 3.935 11 C 0.025 3.975 12 C -0.524 4.524 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.048 4.048 21 H 0.129 0.871 22 H 0.132 0.868 23 H 0.129 0.871 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.338 0.662 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.026 0.974 30 H 0.014 0.986 31 H 0.261 0.739 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -9.350 15.288 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.056 4.056 3 C -0.038 4.038 4 C -0.096 4.096 5 C -0.139 4.139 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.036 4.036 9 N -0.318 5.318 10 C -0.063 4.063 11 C -0.012 4.012 12 C -0.563 4.563 13 H 0.072 0.928 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.069 4.069 21 H 0.147 0.853 22 H 0.150 0.850 23 H 0.146 0.854 24 H 0.056 0.944 25 H 0.098 0.902 26 H 0.156 0.844 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.805 -9.147 14.903 18.425 hybrid contribution 1.857 -0.172 -0.582 1.954 sum -3.948 -9.319 14.322 17.537 Atomic orbital electron populations 1.81239 1.12141 1.09081 1.07498 1.25749 0.92706 0.93522 0.93614 1.15997 0.84200 1.08151 0.95442 1.21126 0.94433 0.97585 0.96499 1.21043 0.93550 1.00809 0.98527 1.21374 1.00514 0.96420 0.92001 1.19874 0.93266 0.98949 0.95339 1.20935 0.97752 0.93292 0.91663 1.60654 1.53963 1.09941 1.07227 1.22199 0.93753 1.01537 0.88762 1.19070 0.97313 0.90121 0.94741 1.21131 1.36067 0.92915 1.06156 0.92781 1.24999 0.96043 0.95267 0.97993 1.69954 1.46630 0.97945 1.38663 0.86646 0.80357 0.77212 0.83703 1.20208 1.21263 1.20280 1.21109 0.93765 0.95498 0.96507 0.85270 0.85032 0.85352 0.94428 0.90185 0.84422 0.96456 0.92178 0.95601 0.96767 0.92892 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.95 18.54 41.83 0.78 -5.18 16 2 C 0.26 3.07 15.33 -22.47 -0.34 2.73 16 3 C -0.03 -0.35 5.73 -106.93 -0.61 -0.96 16 4 C -0.08 -0.62 9.76 -39.17 -0.38 -1.00 16 5 C -0.12 -0.93 10.03 -39.64 -0.40 -1.32 16 6 C -0.08 -0.75 9.69 -39.49 -0.38 -1.13 16 7 C -0.07 -0.79 5.39 -104.68 -0.56 -1.36 16 8 C 0.09 1.16 5.81 -4.98 -0.03 1.13 16 9 N -0.69 -11.25 6.49 -115.05 -0.75 -12.00 16 10 C 0.07 1.30 5.62 -3.82 -0.02 1.28 16 11 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 13 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C -0.05 -0.51 9.40 -39.17 -0.37 -0.88 16 21 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 22 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 23 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 24 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 25 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 26 H 0.34 5.35 8.72 -39.29 -0.34 5.01 16 27 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 291.48 15.07 4.39 4.39 Total: -1.00 -30.96 291.48 -7.63 -38.59 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.11 Total: -1.83 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -3.66 Total: -14.41 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.77 Total: -43.13 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.96 -7.63 -38.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037749384.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.096 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds