Wall clock time and date at job start Sun Mar 29 2020 21:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39652 * 120.14725 * 260.27863 * 3 2 1 5 5 C 1.37931 * 119.84545 * 179.72103 * 4 3 2 6 6 C 1.38387 * 120.14776 * 0.57637 * 5 4 3 7 7 C 1.38342 * 120.30616 * 359.68028 * 6 5 4 8 8 C 1.50696 * 119.92571 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.46839 * 270.02094 * 8 7 6 10 10 C 1.46906 * 110.99777 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46802 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47120 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99608 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00085 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00281 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99793 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47012 * 60.00064 * 16 14 12 18 18 H 1.48503 * 109.47019 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47221 * 299.99583 * 16 14 12 20 20 C 1.37967 * 120.14964 * 0.03915 * 7 6 5 21 21 H 1.08004 * 120.07835 * 359.97438 * 4 3 2 22 22 H 1.07998 * 119.92387 * 180.27808 * 5 4 3 23 23 H 1.08001 * 119.84964 * 179.69650 * 6 5 4 24 24 H 1.09000 * 109.47242 * 30.01456 * 8 7 6 25 25 H 1.09003 * 109.47479 * 150.02051 * 8 7 6 26 26 H 1.00897 * 111.00631 * 56.04207 * 9 8 7 27 27 H 1.08994 * 109.46923 * 299.99135 * 10 9 8 28 28 H 1.09000 * 109.47229 * 60.00193 * 10 9 8 29 29 H 1.09007 * 109.46965 * 299.99488 * 11 10 9 30 30 H 1.09000 * 109.47425 * 59.99533 * 11 10 9 31 31 H 0.96993 * 120.00491 * 180.02562 * 15 14 12 32 32 H 1.08003 * 120.07671 * 180.02562 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 0.2049 1.1903 5 6 4.6485 0.1985 1.1841 6 6 5.3374 0.0023 0.0000 7 6 4.6490 -0.1953 -1.1836 8 6 5.4077 -0.4088 -2.4680 9 7 5.6538 0.8881 -3.1126 10 6 6.3927 0.7187 -4.3710 11 6 6.6290 2.0879 -5.0118 12 6 7.3864 1.9141 -6.3030 13 1 7.6711 0.9260 -6.6332 14 6 7.7167 3.0166 -7.0622 15 7 7.3705 4.2198 -6.6598 16 14 8.6562 2.8012 -8.6624 17 1 7.8669 1.9509 -9.5892 18 1 8.8855 4.1300 -9.2845 19 1 9.9626 2.1517 -8.3858 20 6 3.2693 -0.1971 -1.1908 21 1 2.7328 0.3633 2.1142 22 1 5.1921 0.3518 2.1046 23 1 6.4174 0.0031 -0.0001 24 1 6.3598 -0.8932 -2.2513 25 1 4.8219 -1.0409 -3.1354 26 1 6.1396 1.5155 -2.4893 27 1 7.3516 0.2420 -4.1679 28 1 5.8133 0.0946 -5.0513 29 1 5.6698 2.5643 -5.2150 30 1 7.2081 2.7124 -4.3316 31 1 7.6025 4.9954 -7.1941 32 1 2.7331 -0.3519 -2.1154 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037749384.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:53 Heat of formation + Delta-G solvation = 21.443371 kcal Electronic energy + Delta-G solvation = -14244.135295 eV Core-core repulsion = 11782.234378 eV Total energy + Delta-G solvation = -2461.900917 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.50381 -37.85552 -37.13462 -35.10532 -33.04545 -32.19056 -30.62310 -27.01376 -25.09598 -24.69782 -22.58737 -22.33611 -19.24585 -18.46491 -17.25253 -16.94781 -16.52108 -16.07054 -15.61995 -15.29388 -14.98864 -14.71927 -14.23848 -14.14281 -14.02961 -13.72270 -13.45105 -13.09779 -12.85297 -12.79958 -12.48709 -12.33086 -11.91742 -11.87154 -11.37124 -11.25357 -10.53622 -9.86809 -9.80219 -9.20829 -8.18019 -6.29446 -0.15212 0.41238 1.42477 1.45457 1.53286 1.58793 1.93865 2.42625 2.84164 2.91484 3.15637 3.57060 3.86644 3.99297 4.19538 4.34155 4.38557 4.56002 4.62698 4.69827 4.79457 4.94059 5.07827 5.11819 5.36918 5.43352 5.47705 5.61625 5.71167 5.81002 5.92744 6.16284 6.30163 6.42072 6.58497 6.88579 7.39994 8.93828 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042806 B = 0.003963 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.962814 B = 7063.589254 C = 7333.710040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.280 3.720 3 C -0.048 4.048 4 C -0.065 4.065 5 C -0.114 4.114 6 C -0.079 4.079 7 C -0.089 4.089 8 C 0.096 3.904 9 N -0.696 5.696 10 C 0.084 3.916 11 C 0.030 3.970 12 C -0.545 4.545 13 H 0.062 0.938 14 C 0.001 3.999 15 N -0.932 5.932 16 Si 0.966 3.034 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.265 1.265 20 C -0.057 4.057 21 H 0.153 0.847 22 H 0.165 0.835 23 H 0.145 0.855 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.341 0.659 27 H 0.025 0.975 28 H 0.058 0.942 29 H -0.008 1.008 30 H -0.007 1.007 31 H 0.263 0.737 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 -10.371 16.268 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.034 4.034 3 C -0.051 4.051 4 C -0.086 4.086 5 C -0.131 4.131 6 C -0.099 4.099 7 C -0.089 4.089 8 C -0.032 4.032 9 N -0.327 5.327 10 C -0.045 4.045 11 C -0.008 4.008 12 C -0.584 4.584 13 H 0.080 0.920 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.078 4.078 21 H 0.171 0.829 22 H 0.183 0.817 23 H 0.163 0.837 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.159 0.841 27 H 0.043 0.957 28 H 0.077 0.923 29 H 0.010 0.990 30 H 0.011 0.989 31 H 0.072 0.928 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.544 -10.190 15.900 19.424 hybrid contribution 1.472 0.150 -0.796 1.680 sum -3.072 -10.040 15.104 18.395 Atomic orbital electron populations 1.81252 1.13429 1.10951 1.08958 1.26011 0.92925 0.92173 0.92294 1.16054 0.83185 1.09698 0.96186 1.21459 0.94942 0.95664 0.96491 1.21400 0.93264 0.99217 0.99263 1.21638 1.01487 0.95042 0.91699 1.19718 0.93037 1.00917 0.95255 1.20931 0.98725 0.91194 0.92356 1.60522 1.53197 1.12408 1.06571 1.21782 0.94599 0.97838 0.90232 1.18936 0.94816 0.92734 0.94289 1.21616 1.36164 0.93384 1.07198 0.91976 1.25968 0.97012 0.94873 1.01894 1.70096 1.47960 0.98867 1.40313 0.85497 0.79226 0.77335 0.78956 1.19274 1.20999 1.18960 1.21098 0.94045 0.96050 0.96632 0.82944 0.81749 0.83700 0.92911 0.90291 0.84099 0.95663 0.92325 0.98999 0.98861 0.92794 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.27 18.54 19.00 0.35 -12.91 16 2 C 0.28 6.53 15.33 88.33 1.35 7.88 16 3 C -0.05 -0.90 5.73 -21.36 -0.12 -1.03 16 4 C -0.07 -0.88 9.76 22.54 0.22 -0.66 16 5 C -0.11 -1.31 10.03 22.23 0.22 -1.08 16 6 C -0.08 -1.19 9.69 22.33 0.22 -0.97 16 7 C -0.09 -1.77 5.39 -19.91 -0.11 -1.87 16 8 C 0.10 2.28 5.81 85.55 0.50 2.78 16 9 N -0.70 -22.48 6.49 -517.91 -3.36 -25.84 16 10 C 0.08 3.34 5.62 86.30 0.49 3.82 16 11 C 0.03 1.55 5.23 29.85 0.16 1.71 16 12 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 13 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 16 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 C -0.06 -1.18 9.40 22.54 0.21 -0.97 16 21 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 22 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 23 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 24 H 0.05 1.11 8.08 -2.39 -0.02 1.09 16 25 H 0.08 1.87 8.08 -2.39 -0.02 1.85 16 26 H 0.34 10.62 8.72 -89.70 -0.78 9.84 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 29 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -67.61 291.48 3.47 -64.14 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.34 Total: 5.59 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 3.83 Total: -20.33 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -2.72 Total: -95.18 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -67.61 3.47 -64.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037749384.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.587 kcal (2) G-P(sol) polarization free energy of solvation -67.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds