Wall clock time and date at job start Sun Mar 29 2020 21:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.46819 * 2 1 4 4 C 1.36941 * 119.99709 * 263.50734 * 3 2 1 5 5 H 1.08002 * 119.99591 * 142.36506 * 4 3 2 6 6 C 1.38806 * 120.00047 * 322.36465 * 4 3 2 7 7 N 1.31625 * 119.99895 * 157.31709 * 6 4 3 8 8 Si 1.86797 * 120.00136 * 337.31317 * 6 4 3 9 9 H 1.48504 * 109.47255 * 95.70928 * 8 6 4 10 10 H 1.48505 * 109.47316 * 215.70789 * 8 6 4 11 11 H 1.48497 * 109.47231 * 335.71019 * 8 6 4 12 12 C 1.46494 * 119.99909 * 83.50734 * 3 2 1 13 13 C 1.50701 * 109.47099 * 89.99850 * 12 3 2 14 14 C 1.37962 * 120.07967 * 259.99932 * 13 12 3 15 15 C 1.38350 * 120.15320 * 179.97438 * 14 13 12 16 16 C 1.38381 * 120.30453 * 0.02562 * 15 14 13 17 17 C 1.37928 * 120.15293 * 0.02562 * 16 15 14 18 18 C 1.39612 * 120.07518 * 79.72500 * 13 12 3 19 19 C 1.43204 * 120.15448 * 0.02562 * 18 13 12 20 20 N 5.15036 * 122.24458 * 353.04587 * 2 1 3 21 21 H 1.09005 * 109.46991 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46762 * 299.99598 * 1 2 3 23 23 H 1.08997 * 109.47349 * 60.00295 * 1 2 3 24 24 H 1.09001 * 109.46762 * 240.00402 * 2 1 3 25 25 H 1.08997 * 109.47349 * 119.99705 * 2 1 3 26 26 H 0.96999 * 119.99832 * 179.97438 * 7 6 4 27 27 H 1.09007 * 109.47273 * 210.00020 * 12 3 2 28 28 H 1.08997 * 109.47559 * 329.99727 * 12 3 2 29 29 H 1.08000 * 119.92497 * 359.97438 * 14 13 12 30 30 H 1.07998 * 119.84724 * 180.02562 * 15 14 13 31 31 H 1.07994 * 119.92649 * 179.97438 * 16 15 14 32 32 H 1.07997 * 120.08157 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3729 1.9821 -1.1784 5 1 2.1520 3.0269 -1.3396 6 6 3.0162 1.2483 -2.1655 7 7 2.9650 1.6452 -3.4194 8 14 3.9547 -0.3025 -1.7144 9 1 3.0825 -1.4866 -1.9203 10 1 5.1597 -0.4198 -2.5744 11 1 4.3682 -0.2342 -0.2898 12 6 2.1272 2.1197 1.2606 13 6 3.4955 1.9023 1.8535 14 6 3.6710 0.9862 2.8700 15 6 4.9266 0.7851 3.4150 16 6 6.0143 1.5006 2.9459 17 6 5.8529 2.4204 1.9309 18 6 4.5894 2.6235 1.3715 19 6 4.4157 3.5722 0.3130 20 7 4.2779 4.3240 -0.5274 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.4149 1.1327 -4.1091 27 1 1.9771 3.1829 1.0730 28 1 1.3685 1.7631 1.9572 29 1 2.8264 0.4247 3.2411 30 1 5.0585 0.0664 4.2103 31 1 6.9916 1.3390 3.3761 32 1 6.7026 2.9778 1.5654 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044317772.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:48 Heat of formation + Delta-G solvation = 57.179997 kcal Electronic energy + Delta-G solvation = -15967.865639 eV Core-core repulsion = 13507.514378 eV Total energy + Delta-G solvation = -2460.351260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.46635 -37.83451 -37.12360 -34.03170 -32.97914 -32.02857 -30.74150 -27.71699 -25.11516 -24.52989 -23.17096 -21.85162 -19.39997 -18.71829 -17.32047 -16.62792 -16.48016 -16.08691 -15.38702 -15.03514 -14.90483 -14.69909 -14.22699 -13.90018 -13.65299 -13.59956 -13.48259 -13.03473 -12.94045 -12.86106 -12.36810 -12.25992 -12.00909 -11.84809 -11.69191 -11.37342 -10.67538 -9.73496 -9.58596 -8.80670 -8.20425 -5.56720 0.05068 0.55297 1.24922 1.36955 1.47985 1.98335 2.26517 2.39878 2.99052 3.08458 3.28533 3.55544 4.01835 4.06692 4.27531 4.34252 4.48646 4.65343 4.67673 4.74196 4.78437 4.96067 5.01024 5.04261 5.21323 5.22297 5.51061 5.53885 5.63149 5.70176 5.94860 6.11378 6.19606 6.83077 6.98929 7.62576 8.01548 9.00115 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.012651 C = 0.011018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.249138 B = 2212.707918 C = 2540.613850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 N -0.607 5.607 4 C -0.234 4.234 5 H 0.032 0.968 6 C -0.018 4.018 7 N -0.950 5.950 8 Si 0.928 3.072 9 H -0.272 1.272 10 H -0.320 1.320 11 H -0.241 1.241 12 C 0.172 3.828 13 C -0.061 4.061 14 C -0.120 4.120 15 C -0.086 4.086 16 C -0.127 4.127 17 C -0.086 4.086 18 C -0.045 4.045 19 C 0.270 3.730 20 N -0.470 5.470 21 H 0.069 0.931 22 H 0.065 0.935 23 H 0.025 0.975 24 H 0.030 0.970 25 H 0.072 0.928 26 H 0.258 0.742 27 H 0.035 0.965 28 H 0.096 0.904 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.306 -6.504 19.029 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.001 3.999 3 N -0.329 5.329 4 C -0.364 4.364 5 H 0.050 0.950 6 C -0.214 4.214 7 N -0.594 5.594 8 Si 0.757 3.243 9 H -0.199 1.199 10 H -0.249 1.249 11 H -0.164 1.164 12 C 0.047 3.953 13 C -0.067 4.067 14 C -0.139 4.139 15 C -0.105 4.105 16 C -0.145 4.145 17 C -0.107 4.107 18 C -0.049 4.049 19 C -0.044 4.044 20 N -0.146 5.146 21 H 0.088 0.912 22 H 0.084 0.916 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.180 0.820 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.089 -5.353 17.568 18.623 hybrid contribution 0.517 -0.445 -0.884 1.117 sum 3.606 -5.798 16.683 18.027 Atomic orbital electron populations 1.22121 0.96793 1.01262 1.01131 1.21281 0.94283 0.84836 0.99546 1.44355 1.74172 1.12469 1.01912 1.18469 1.31060 0.95373 0.91530 0.95049 1.26053 0.98941 1.01433 0.94961 1.70029 1.45793 1.42781 1.00839 0.86055 0.78079 0.80808 0.79408 1.19926 1.24947 1.16375 1.20144 0.92026 0.95856 0.87237 1.21054 0.96529 0.94752 0.94351 1.21291 0.99544 0.97360 0.95694 1.21782 0.91615 0.98024 0.99033 1.21396 1.00966 0.95692 0.96417 1.21392 0.94407 0.98560 0.96330 1.16267 0.96609 0.97542 0.94527 1.26099 0.92469 0.92878 0.92951 1.81116 1.08503 1.14630 1.10391 0.91230 0.91562 0.95561 0.95229 0.90991 0.93301 0.94701 0.88566 0.82893 0.81765 0.81990 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 10.23 71.98 0.74 -4.44 16 2 C 0.12 4.87 5.00 86.38 0.43 5.30 16 3 N -0.61 -27.33 2.06 -706.34 -1.46 -28.79 16 4 C -0.23 -13.36 7.77 84.03 0.65 -12.70 16 5 H 0.03 2.10 7.63 -2.91 -0.02 2.08 16 6 C -0.02 -1.06 5.25 84.86 0.45 -0.62 16 7 N -0.95 -62.42 13.97 21.65 0.30 -62.11 16 8 Si 0.93 46.66 25.07 68.60 1.72 48.38 16 9 H -0.27 -12.91 6.69 99.48 0.67 -12.24 16 10 H -0.32 -16.85 7.11 99.48 0.71 -16.14 16 11 H -0.24 -11.11 7.11 99.48 0.71 -10.40 16 12 C 0.17 6.30 5.42 85.63 0.46 6.77 16 13 C -0.06 -2.00 5.50 -19.60 -0.11 -2.11 16 14 C -0.12 -2.80 9.66 22.23 0.21 -2.59 16 15 C -0.09 -1.58 10.04 22.33 0.22 -1.35 16 16 C -0.13 -2.50 10.03 22.23 0.22 -2.28 16 17 C -0.09 -2.37 9.76 22.54 0.22 -2.15 16 18 C -0.05 -1.62 5.73 -21.36 -0.12 -1.75 16 19 C 0.27 12.16 12.19 88.33 1.08 13.24 16 20 N -0.47 -24.23 17.85 19.00 0.34 -23.89 16 21 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 22 H 0.07 1.92 8.09 -2.39 -0.02 1.90 16 23 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.03 1.33 3.66 -2.39 -0.01 1.32 16 25 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 26 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 27 H 0.03 1.44 7.39 -2.38 -0.02 1.42 16 28 H 0.10 2.74 7.89 -2.39 -0.02 2.72 16 29 H 0.15 2.66 8.03 -2.91 -0.02 2.63 16 30 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -76.74 276.00 6.43 -70.31 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 1.07 Total: 0.78 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 4.46 Total: -4.67 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -0.81 Total: -114.79 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.72 Total: 48.38 kcal Total: -76.74 6.43 -70.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044317772.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.489 kcal (2) G-P(sol) polarization free energy of solvation -76.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds