Wall clock time and date at job start Sun Mar 29 2020 21:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46496 * 109.47410 * 2 1 4 4 C 1.36935 * 120.00273 * 275.66024 * 3 2 1 5 5 H 1.08004 * 120.00045 * 34.00062 * 4 3 2 6 6 C 1.38812 * 120.00216 * 214.00363 * 4 3 2 7 7 N 1.31614 * 120.00109 * 22.91505 * 6 4 3 8 8 Si 1.86803 * 120.00044 * 202.91523 * 6 4 3 9 9 H 1.48505 * 109.47076 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47347 * 119.99969 * 8 6 4 11 11 H 1.48504 * 109.47104 * 239.99922 * 8 6 4 12 12 C 1.46505 * 119.99989 * 95.65300 * 3 2 1 13 13 C 1.50698 * 109.47280 * 270.00242 * 12 3 2 14 14 C 1.38387 * 119.92757 * 270.02292 * 13 12 3 15 15 C 1.38337 * 120.30723 * 180.02562 * 14 13 12 16 16 C 1.37970 * 120.14957 * 359.67394 * 15 14 13 17 17 C 1.39612 * 119.84619 * 0.60228 * 16 15 14 18 18 C 1.43197 * 120.15313 * 179.70055 * 17 16 15 19 19 N 6.35884 * 52.23313 * 73.39497 * 2 1 3 20 20 C 1.37923 * 119.92231 * 89.99801 * 13 12 3 21 21 H 1.09001 * 109.47365 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47047 * 300.00061 * 1 2 3 23 23 H 1.09000 * 109.47284 * 59.99673 * 1 2 3 24 24 H 1.09005 * 109.47047 * 239.99938 * 2 1 3 25 25 H 1.09000 * 109.47284 * 120.00327 * 2 1 3 26 26 H 0.96998 * 120.00583 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.46893 * 150.00511 * 12 3 2 28 28 H 1.08996 * 109.47052 * 30.00683 * 12 3 2 29 29 H 1.08002 * 119.84576 * 359.97438 * 14 13 12 30 30 H 1.07994 * 119.92550 * 180.02562 * 15 14 13 31 31 H 1.08004 * 120.07656 * 180.30137 * 16 15 14 32 32 H 1.08003 * 120.07788 * 0.04792 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1363 2.0657 -1.1801 5 1 1.4322 1.8888 -1.9797 6 6 3.1609 2.9869 -1.3487 7 7 4.2516 2.8993 -0.6173 8 14 2.9917 4.3510 -2.6136 9 1 1.6806 4.2295 -3.3003 10 1 3.0751 5.6690 -1.9346 11 1 4.0852 4.2386 -3.6121 12 6 2.3804 2.0301 1.2626 13 6 1.1715 2.7239 1.8355 14 6 0.9079 4.0406 1.5009 15 6 -0.1992 4.6853 2.0227 16 6 -1.0525 4.0164 2.8759 17 6 -0.7895 2.6898 3.2224 18 6 -1.6671 1.9912 4.1125 19 7 -2.3645 1.4365 4.8171 20 6 0.3300 2.0450 2.6918 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 4.9675 3.5432 -0.7347 27 1 3.1678 2.7620 1.0822 28 1 2.7367 1.2793 1.9679 29 1 1.5702 4.5676 0.8299 30 1 -0.3993 5.7128 1.7570 31 1 -1.9192 4.5194 3.2788 32 1 0.5370 1.0176 2.9525 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045060891.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:51 Heat of formation + Delta-G solvation = 67.932336 kcal Electronic energy + Delta-G solvation = -15564.377823 eV Core-core repulsion = 13104.492819 eV Total energy + Delta-G solvation = -2459.885004 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.10973 -36.45488 -35.67828 -32.00749 -31.51161 -30.81243 -28.75751 -25.72528 -23.62666 -23.36842 -21.43060 -20.36455 -17.93208 -16.64902 -15.85993 -15.21763 -14.77233 -14.09573 -13.94607 -13.70798 -13.60960 -12.98504 -12.83435 -12.57658 -12.44780 -12.03012 -11.82039 -11.36290 -11.21522 -11.10163 -10.76918 -10.64101 -10.47811 -10.09747 -10.01536 -9.89863 -8.61267 -8.52645 -8.23348 -6.73698 -5.90672 -3.43320 1.19036 1.78325 2.85140 3.25940 3.28610 3.38333 3.41313 4.15631 4.25841 4.41861 5.17487 5.23054 5.26843 5.53089 5.67653 5.77462 5.92143 5.99828 6.13495 6.30715 6.34651 6.42834 6.57396 6.59216 6.66423 6.82245 6.85757 7.09018 7.21444 7.32547 7.55301 7.68450 7.73738 8.38883 9.06494 9.69865 10.26059 11.09391 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.028217 B = 0.008711 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.088590 B = 3213.558635 C = 3753.110331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.576 5.576 4 C -0.250 4.250 5 H 0.063 0.937 6 C 0.009 3.991 7 N -0.884 5.884 8 Si 0.891 3.109 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.289 1.289 12 C 0.167 3.833 13 C -0.070 4.070 14 C -0.067 4.067 15 C -0.127 4.127 16 C -0.092 4.092 17 C -0.049 4.049 18 C 0.269 3.731 19 N -0.445 5.445 20 C -0.069 4.069 21 H 0.035 0.965 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.036 0.964 26 H 0.256 0.744 27 H 0.113 0.887 28 H 0.037 0.963 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 2.076 4.120 6.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.295 5.295 4 C -0.380 4.380 5 H 0.080 0.920 6 C -0.191 4.191 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.216 1.216 12 C 0.040 3.960 13 C -0.074 4.074 14 C -0.087 4.087 15 C -0.145 4.145 16 C -0.113 4.113 17 C -0.052 4.052 18 C -0.046 4.046 19 N -0.120 5.120 20 C -0.091 4.091 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.130 0.870 28 H 0.055 0.945 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.917 1.259 5.168 7.956 hybrid contribution 0.024 1.006 -0.974 1.401 sum -5.892 2.265 4.194 7.579 Atomic orbital electron populations 1.22392 0.99889 0.99090 1.01623 1.20877 0.91808 0.86833 0.98976 1.43788 1.75505 1.08139 1.02050 1.19089 1.07449 1.18503 0.92958 0.91955 1.25061 0.94162 1.01504 0.98361 1.69972 1.04610 1.35818 1.42303 0.86410 0.77894 0.82406 0.81295 1.20007 1.21201 1.21597 1.20200 0.92539 0.97283 0.85949 1.21284 0.99451 0.93733 0.92924 1.21410 0.96166 0.94604 0.96542 1.21046 0.95345 0.99986 0.98146 1.20901 0.99449 0.92519 0.98444 1.15998 0.95356 0.94025 0.99826 1.25946 0.92870 0.92950 0.92818 1.81179 1.10396 1.09240 1.11225 1.21080 0.92540 0.99246 0.96202 0.94574 0.93331 0.93194 0.93589 0.94603 0.93378 0.86998 0.94457 0.85426 0.85882 0.86180 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.20 37.15 0.38 -2.65 16 2 C 0.14 2.80 6.44 -4.05 -0.03 2.77 16 3 N -0.58 -13.08 2.44 -174.61 -0.43 -13.51 16 4 C -0.25 -6.29 9.48 -15.06 -0.14 -6.43 16 5 H 0.06 1.60 7.93 -52.48 -0.42 1.19 16 6 C 0.01 0.23 4.95 -17.43 -0.09 0.14 16 7 N -0.88 -23.34 11.31 55.49 0.63 -22.72 16 8 Si 0.89 19.97 29.61 -169.99 -5.03 14.94 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.17 3.50 5.45 -5.19 -0.03 3.47 16 13 C -0.07 -1.27 5.44 -104.68 -0.57 -1.84 16 14 C -0.07 -1.16 9.69 -39.49 -0.38 -1.55 16 15 C -0.13 -1.81 10.03 -39.64 -0.40 -2.21 16 16 C -0.09 -1.25 9.76 -39.17 -0.38 -1.64 16 17 C -0.05 -0.73 5.73 -106.93 -0.61 -1.34 16 18 C 0.27 4.16 15.33 -22.47 -0.34 3.82 16 19 N -0.44 -7.52 18.54 41.84 0.78 -6.75 16 20 C -0.07 -1.12 7.57 -39.17 -0.30 -1.41 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.86 6.13 -51.93 -0.32 0.54 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16 25 H 0.04 0.66 7.83 -51.93 -0.41 0.25 16 26 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.11 2.66 5.26 -51.92 -0.27 2.39 16 28 H 0.04 0.74 7.80 -51.93 -0.40 0.34 16 29 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 32 H 0.12 1.86 8.02 -52.48 -0.42 1.44 16 LS Contribution 283.12 15.07 4.27 4.27 Total: -1.00 -26.57 283.12 -6.59 -33.16 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.91 Total: -0.54 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.89 Total: -8.87 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.98 Total: -42.97 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.57 -6.59 -33.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060891.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.096 kcal (2) G-P(sol) polarization free energy of solvation -26.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds