Wall clock time and date at job start Sun Mar 29 2020 21:45:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46496 * 109.47410 * 2 1
4 4 C 1.36935 * 120.00273 * 275.66024 * 3 2 1
5 5 H 1.08004 * 120.00045 * 34.00062 * 4 3 2
6 6 C 1.38812 * 120.00216 * 214.00363 * 4 3 2
7 7 N 1.31614 * 120.00109 * 22.91505 * 6 4 3
8 8 Si 1.86803 * 120.00044 * 202.91523 * 6 4 3
9 9 H 1.48505 * 109.47076 * 359.97438 * 8 6 4
10 10 H 1.48493 * 109.47347 * 119.99969 * 8 6 4
11 11 H 1.48504 * 109.47104 * 239.99922 * 8 6 4
12 12 C 1.46505 * 119.99989 * 95.65300 * 3 2 1
13 13 C 1.50698 * 109.47280 * 270.00242 * 12 3 2
14 14 C 1.38387 * 119.92757 * 270.02292 * 13 12 3
15 15 C 1.38337 * 120.30723 * 180.02562 * 14 13 12
16 16 C 1.37970 * 120.14957 * 359.67394 * 15 14 13
17 17 C 1.39612 * 119.84619 * 0.60228 * 16 15 14
18 18 C 1.43197 * 120.15313 * 179.70055 * 17 16 15
19 19 N 6.35884 * 52.23313 * 73.39497 * 2 1 3
20 20 C 1.37923 * 119.92231 * 89.99801 * 13 12 3
21 21 H 1.09001 * 109.47365 * 179.97438 * 1 2 3
22 22 H 1.09005 * 109.47047 * 300.00061 * 1 2 3
23 23 H 1.09000 * 109.47284 * 59.99673 * 1 2 3
24 24 H 1.09005 * 109.47047 * 239.99938 * 2 1 3
25 25 H 1.09000 * 109.47284 * 120.00327 * 2 1 3
26 26 H 0.96998 * 120.00583 * 180.02562 * 7 6 4
27 27 H 1.09008 * 109.46893 * 150.00511 * 12 3 2
28 28 H 1.08996 * 109.47052 * 30.00683 * 12 3 2
29 29 H 1.08002 * 119.84576 * 359.97438 * 14 13 12
30 30 H 1.07994 * 119.92550 * 180.02562 * 15 14 13
31 31 H 1.08004 * 120.07656 * 180.30137 * 16 15 14
32 32 H 1.08003 * 120.07788 * 0.04792 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1363 2.0657 -1.1801
5 1 1.4322 1.8888 -1.9797
6 6 3.1609 2.9869 -1.3487
7 7 4.2516 2.8993 -0.6173
8 14 2.9917 4.3510 -2.6136
9 1 1.6806 4.2295 -3.3003
10 1 3.0751 5.6690 -1.9346
11 1 4.0852 4.2386 -3.6121
12 6 2.3804 2.0301 1.2626
13 6 1.1715 2.7239 1.8355
14 6 0.9079 4.0406 1.5009
15 6 -0.1992 4.6853 2.0227
16 6 -1.0525 4.0164 2.8759
17 6 -0.7895 2.6898 3.2224
18 6 -1.6671 1.9912 4.1125
19 7 -2.3645 1.4365 4.8171
20 6 0.3300 2.0450 2.6918
21 1 -0.3634 -1.0277 -0.0005
22 1 -0.3633 0.5139 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 1.8933 -0.5139 -0.8900
25 1 1.8933 -0.5139 0.8899
26 1 4.9675 3.5432 -0.7347
27 1 3.1678 2.7620 1.0822
28 1 2.7367 1.2793 1.9679
29 1 1.5702 4.5676 0.8299
30 1 -0.3993 5.7128 1.7570
31 1 -1.9192 4.5194 3.2788
32 1 0.5370 1.0176 2.9525
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000045060891.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:45:51
Heat of formation + Delta-G solvation = 67.932336 kcal
Electronic energy + Delta-G solvation = -15564.377823 eV
Core-core repulsion = 13104.492819 eV
Total energy + Delta-G solvation = -2459.885004 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.10973 -36.45488 -35.67828 -32.00749 -31.51161 -30.81243 -28.75751 -25.72528
-23.62666 -23.36842 -21.43060 -20.36455 -17.93208 -16.64902 -15.85993 -15.21763
-14.77233 -14.09573 -13.94607 -13.70798 -13.60960 -12.98504 -12.83435 -12.57658
-12.44780 -12.03012 -11.82039 -11.36290 -11.21522 -11.10163 -10.76918 -10.64101
-10.47811 -10.09747 -10.01536 -9.89863 -8.61267 -8.52645 -8.23348 -6.73698
-5.90672 -3.43320 1.19036 1.78325 2.85140 3.25940 3.28610 3.38333
3.41313 4.15631 4.25841 4.41861 5.17487 5.23054 5.26843 5.53089
5.67653 5.77462 5.92143 5.99828 6.13495 6.30715 6.34651 6.42834
6.57396 6.59216 6.66423 6.82245 6.85757 7.09018 7.21444 7.32547
7.55301 7.68450 7.73738 8.38883 9.06494 9.69865 10.26059 11.09391
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.028217 B = 0.008711 C = 0.007459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 992.088590 B = 3213.558635 C = 3753.110331
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.141 3.859
3 N -0.576 5.576
4 C -0.250 4.250
5 H 0.063 0.937
6 C 0.009 3.991
7 N -0.884 5.884
8 Si 0.891 3.109
9 H -0.275 1.275
10 H -0.286 1.286
11 H -0.289 1.289
12 C 0.167 3.833
13 C -0.070 4.070
14 C -0.067 4.067
15 C -0.127 4.127
16 C -0.092 4.092
17 C -0.049 4.049
18 C 0.269 3.731
19 N -0.445 5.445
20 C -0.069 4.069
21 H 0.035 0.965
22 H 0.048 0.952
23 H 0.049 0.951
24 H 0.046 0.954
25 H 0.036 0.964
26 H 0.256 0.744
27 H 0.113 0.887
28 H 0.037 0.963
29 H 0.128 0.872
30 H 0.123 0.877
31 H 0.120 0.880
32 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.027 2.076 4.120 6.824
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.015 3.985
3 N -0.295 5.295
4 C -0.380 4.380
5 H 0.080 0.920
6 C -0.191 4.191
7 N -0.527 5.527
8 Si 0.720 3.280
9 H -0.200 1.200
10 H -0.212 1.212
11 H -0.216 1.216
12 C 0.040 3.960
13 C -0.074 4.074
14 C -0.087 4.087
15 C -0.145 4.145
16 C -0.113 4.113
17 C -0.052 4.052
18 C -0.046 4.046
19 N -0.120 5.120
20 C -0.091 4.091
21 H 0.054 0.946
22 H 0.067 0.933
23 H 0.068 0.932
24 H 0.064 0.936
25 H 0.054 0.946
26 H 0.066 0.934
27 H 0.130 0.870
28 H 0.055 0.945
29 H 0.146 0.854
30 H 0.141 0.859
31 H 0.138 0.862
32 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -5.917 1.259 5.168 7.956
hybrid contribution 0.024 1.006 -0.974 1.401
sum -5.892 2.265 4.194 7.579
Atomic orbital electron populations
1.22392 0.99889 0.99090 1.01623 1.20877 0.91808 0.86833 0.98976
1.43788 1.75505 1.08139 1.02050 1.19089 1.07449 1.18503 0.92958
0.91955 1.25061 0.94162 1.01504 0.98361 1.69972 1.04610 1.35818
1.42303 0.86410 0.77894 0.82406 0.81295 1.20007 1.21201 1.21597
1.20200 0.92539 0.97283 0.85949 1.21284 0.99451 0.93733 0.92924
1.21410 0.96166 0.94604 0.96542 1.21046 0.95345 0.99986 0.98146
1.20901 0.99449 0.92519 0.98444 1.15998 0.95356 0.94025 0.99826
1.25946 0.92870 0.92950 0.92818 1.81179 1.10396 1.09240 1.11225
1.21080 0.92540 0.99246 0.96202 0.94574 0.93331 0.93194 0.93589
0.94603 0.93378 0.86998 0.94457 0.85426 0.85882 0.86180 0.86042
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.03 10.20 37.15 0.38 -2.65 16
2 C 0.14 2.80 6.44 -4.05 -0.03 2.77 16
3 N -0.58 -13.08 2.44 -174.61 -0.43 -13.51 16
4 C -0.25 -6.29 9.48 -15.06 -0.14 -6.43 16
5 H 0.06 1.60 7.93 -52.48 -0.42 1.19 16
6 C 0.01 0.23 4.95 -17.43 -0.09 0.14 16
7 N -0.88 -23.34 11.31 55.49 0.63 -22.72 16
8 Si 0.89 19.97 29.61 -169.99 -5.03 14.94 16
9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16
11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16
12 C 0.17 3.50 5.45 -5.19 -0.03 3.47 16
13 C -0.07 -1.27 5.44 -104.68 -0.57 -1.84 16
14 C -0.07 -1.16 9.69 -39.49 -0.38 -1.55 16
15 C -0.13 -1.81 10.03 -39.64 -0.40 -2.21 16
16 C -0.09 -1.25 9.76 -39.17 -0.38 -1.64 16
17 C -0.05 -0.73 5.73 -106.93 -0.61 -1.34 16
18 C 0.27 4.16 15.33 -22.47 -0.34 3.82 16
19 N -0.44 -7.52 18.54 41.84 0.78 -6.75 16
20 C -0.07 -1.12 7.57 -39.17 -0.30 -1.41 16
21 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16
22 H 0.05 0.86 6.13 -51.93 -0.32 0.54 16
23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
24 H 0.05 0.94 8.09 -51.93 -0.42 0.52 16
25 H 0.04 0.66 7.83 -51.93 -0.41 0.25 16
26 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16
27 H 0.11 2.66 5.26 -51.92 -0.27 2.39 16
28 H 0.04 0.74 7.80 -51.93 -0.40 0.34 16
29 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16
30 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16
31 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16
32 H 0.12 1.86 8.02 -52.48 -0.42 1.44 16
LS Contribution 283.12 15.07 4.27 4.27
Total: -1.00 -26.57 283.12 -6.59 -33.16
By element:
Atomic # 1 Polarization: 3.37 SS G_CDS: -3.91 Total: -0.54 kcal
Atomic # 6 Polarization: -5.98 SS G_CDS: -2.89 Total: -8.87 kcal
Atomic # 7 Polarization: -43.94 SS G_CDS: 0.98 Total: -42.97 kcal
Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal
Total LS contribution 4.27 Total: 4.27 kcal
Total: -26.57 -6.59 -33.16 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000045060891.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.096 kcal
(2) G-P(sol) polarization free energy of solvation -26.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.589 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.932 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds