Wall clock time and date at job start Sun Mar 29 2020 21:45:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46496 * 109.47410 * 2 1
4 4 C 1.36935 * 120.00273 * 275.66024 * 3 2 1
5 5 H 1.08004 * 120.00045 * 34.00062 * 4 3 2
6 6 C 1.38812 * 120.00216 * 214.00363 * 4 3 2
7 7 N 1.31614 * 120.00109 * 22.91505 * 6 4 3
8 8 Si 1.86803 * 120.00044 * 202.91523 * 6 4 3
9 9 H 1.48505 * 109.47076 * 359.97438 * 8 6 4
10 10 H 1.48493 * 109.47347 * 119.99969 * 8 6 4
11 11 H 1.48504 * 109.47104 * 239.99922 * 8 6 4
12 12 C 1.46505 * 119.99989 * 95.65300 * 3 2 1
13 13 C 1.50698 * 109.47280 * 270.00242 * 12 3 2
14 14 C 1.38387 * 119.92757 * 270.02292 * 13 12 3
15 15 C 1.38337 * 120.30723 * 180.02562 * 14 13 12
16 16 C 1.37970 * 120.14957 * 359.67394 * 15 14 13
17 17 C 1.39612 * 119.84619 * 0.60228 * 16 15 14
18 18 C 1.43197 * 120.15313 * 179.70055 * 17 16 15
19 19 N 6.35884 * 52.23313 * 73.39497 * 2 1 3
20 20 C 1.37923 * 119.92231 * 89.99801 * 13 12 3
21 21 H 1.09001 * 109.47365 * 179.97438 * 1 2 3
22 22 H 1.09005 * 109.47047 * 300.00061 * 1 2 3
23 23 H 1.09000 * 109.47284 * 59.99673 * 1 2 3
24 24 H 1.09005 * 109.47047 * 239.99938 * 2 1 3
25 25 H 1.09000 * 109.47284 * 120.00327 * 2 1 3
26 26 H 0.96998 * 120.00583 * 180.02562 * 7 6 4
27 27 H 1.09008 * 109.46893 * 150.00511 * 12 3 2
28 28 H 1.08996 * 109.47052 * 30.00683 * 12 3 2
29 29 H 1.08002 * 119.84576 * 359.97438 * 14 13 12
30 30 H 1.07994 * 119.92550 * 180.02562 * 15 14 13
31 31 H 1.08004 * 120.07656 * 180.30137 * 16 15 14
32 32 H 1.08003 * 120.07788 * 0.04792 * 20 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1363 2.0657 -1.1801
5 1 1.4322 1.8888 -1.9797
6 6 3.1609 2.9869 -1.3487
7 7 4.2516 2.8993 -0.6173
8 14 2.9917 4.3510 -2.6136
9 1 1.6806 4.2295 -3.3003
10 1 3.0751 5.6690 -1.9346
11 1 4.0852 4.2386 -3.6121
12 6 2.3804 2.0301 1.2626
13 6 1.1715 2.7239 1.8355
14 6 0.9079 4.0406 1.5009
15 6 -0.1992 4.6853 2.0227
16 6 -1.0525 4.0164 2.8759
17 6 -0.7895 2.6898 3.2224
18 6 -1.6671 1.9912 4.1125
19 7 -2.3645 1.4365 4.8171
20 6 0.3300 2.0450 2.6918
21 1 -0.3634 -1.0277 -0.0005
22 1 -0.3633 0.5139 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 1.8933 -0.5139 -0.8900
25 1 1.8933 -0.5139 0.8899
26 1 4.9675 3.5432 -0.7347
27 1 3.1678 2.7620 1.0822
28 1 2.7367 1.2793 1.9679
29 1 1.5702 4.5676 0.8299
30 1 -0.3993 5.7128 1.7570
31 1 -1.9192 4.5194 3.2788
32 1 0.5370 1.0176 2.9525
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000045060891.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:45:51
Heat of formation + Delta-G solvation = 55.782908 kcal
Electronic energy + Delta-G solvation = -15564.904661 eV
Core-core repulsion = 13104.492819 eV
Total energy + Delta-G solvation = -2460.411843 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.40070 -37.90679 -37.14969 -33.81797 -32.89322 -32.06441 -30.36202 -27.40660
-25.24938 -24.64701 -22.76175 -21.99365 -19.31108 -18.38797 -17.09562 -16.86668
-16.26357 -15.66347 -15.39686 -15.27093 -14.93768 -14.35495 -14.17606 -14.02500
-13.83787 -13.44248 -13.23999 -12.94342 -12.91388 -12.65264 -12.32697 -12.26268
-11.94959 -11.80931 -11.67060 -11.48521 -10.48973 -9.75813 -9.54455 -8.56727
-7.78923 -5.36120 -0.05593 0.56247 1.47746 1.53893 1.62021 1.62205
2.02103 2.55606 2.91005 3.01840 3.29057 3.89516 4.05693 4.12123
4.34144 4.46057 4.51248 4.66347 4.78755 4.84822 4.89727 5.06533
5.11046 5.19885 5.31729 5.42799 5.52551 5.59304 5.68717 5.80562
5.96269 6.05471 6.45294 6.51794 7.20574 7.90053 8.41452 9.17573
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.028217 B = 0.008711 C = 0.007459
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 992.088590 B = 3213.558635 C = 3753.110331
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.137 3.863
3 N -0.591 5.591
4 C -0.255 4.255
5 H 0.051 0.949
6 C -0.029 4.029
7 N -0.913 5.913
8 Si 0.944 3.056
9 H -0.273 1.273
10 H -0.281 1.281
11 H -0.296 1.296
12 C 0.171 3.829
13 C -0.086 4.086
14 C -0.082 4.082
15 C -0.118 4.118
16 C -0.073 4.073
17 C -0.046 4.046
18 C 0.286 3.714
19 N -0.467 5.467
20 C -0.067 4.067
21 H 0.061 0.939
22 H 0.050 0.950
23 H 0.033 0.967
24 H 0.032 0.968
25 H 0.049 0.951
26 H 0.253 0.747
27 H 0.083 0.917
28 H 0.039 0.961
29 H 0.107 0.893
30 H 0.155 0.845
31 H 0.155 0.845
32 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.929 2.824 4.866 8.925
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.011 3.989
3 N -0.312 5.312
4 C -0.385 4.385
5 H 0.069 0.931
6 C -0.227 4.227
7 N -0.558 5.558
8 Si 0.772 3.228
9 H -0.197 1.197
10 H -0.207 1.207
11 H -0.224 1.224
12 C 0.045 3.955
13 C -0.089 4.089
14 C -0.102 4.102
15 C -0.135 4.135
16 C -0.094 4.094
17 C -0.050 4.050
18 C -0.028 4.028
19 N -0.143 5.143
20 C -0.089 4.089
21 H 0.080 0.920
22 H 0.069 0.931
23 H 0.052 0.948
24 H 0.051 0.949
25 H 0.067 0.933
26 H 0.063 0.937
27 H 0.101 0.899
28 H 0.058 0.942
29 H 0.125 0.875
30 H 0.173 0.827
31 H 0.173 0.827
32 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -7.843 2.002 5.930 10.035
hybrid contribution 0.584 0.748 -1.142 1.484
sum -7.259 2.750 4.789 9.121
Atomic orbital electron populations
1.22216 0.97942 1.00520 1.00878 1.20978 0.93268 0.85636 0.98979
1.43975 1.75936 1.09265 1.01985 1.19156 1.06873 1.18784 0.93705
0.93098 1.25574 0.93940 1.03113 1.00041 1.70081 1.05227 1.36513
1.43953 0.85588 0.77399 0.80466 0.79306 1.19727 1.20676 1.22352
1.19993 0.93255 0.96700 0.85533 1.20878 0.98929 0.94389 0.94703
1.21387 0.97299 0.94509 0.97011 1.21299 0.93809 1.01248 0.97179
1.21286 0.99717 0.91674 0.96735 1.15999 0.94785 0.94602 0.99606
1.25839 0.92317 0.92347 0.92270 1.81214 1.11249 1.09847 1.11993
1.21014 0.92597 0.99477 0.95766 0.92005 0.93115 0.94757 0.94907
0.93253 0.93747 0.89948 0.94236 0.87478 0.82749 0.82696 0.85506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.34 10.20 71.98 0.73 -4.61 16
2 C 0.14 5.39 6.44 86.38 0.56 5.95 16
3 N -0.59 -27.20 2.44 -706.34 -1.73 -28.92 16
4 C -0.25 -13.03 9.48 84.03 0.80 -12.23 16
5 H 0.05 2.67 7.93 -2.91 -0.02 2.65 16
6 C -0.03 -1.51 4.95 84.86 0.42 -1.09 16
7 N -0.91 -49.54 11.31 21.65 0.24 -49.30 16
8 Si 0.94 41.61 29.61 68.60 2.03 43.64 16
9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16
11 H -0.30 -13.31 7.11 99.48 0.71 -12.61 16
12 C 0.17 7.31 5.45 85.63 0.47 7.77 16
13 C -0.09 -3.06 5.44 -19.90 -0.11 -3.17 16
14 C -0.08 -2.76 9.69 22.33 0.22 -2.54 16
15 C -0.12 -2.96 10.03 22.23 0.22 -2.74 16
16 C -0.07 -1.70 9.76 22.54 0.22 -1.48 16
17 C -0.05 -1.25 5.73 -21.36 -0.12 -1.37 16
18 C 0.29 8.03 15.33 88.33 1.35 9.39 16
19 N -0.47 -14.63 18.54 19.00 0.35 -14.28 16
20 C -0.07 -2.05 7.57 22.54 0.17 -1.88 16
21 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16
22 H 0.05 1.70 6.13 -2.38 -0.01 1.68 16
23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16
24 H 0.03 1.35 8.09 -2.38 -0.02 1.33 16
25 H 0.05 1.78 7.83 -2.39 -0.02 1.76 16
26 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16
27 H 0.08 4.07 5.26 -2.38 -0.01 4.05 16
28 H 0.04 1.60 7.80 -2.39 -0.02 1.58 16
29 H 0.11 4.01 8.06 -2.91 -0.02 3.98 16
30 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16
31 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16
32 H 0.13 3.68 8.02 -2.91 -0.02 3.65 16
Total: -1.00 -57.10 283.12 6.94 -50.16
By element:
Atomic # 1 Polarization: 5.58 SS G_CDS: 1.11 Total: 6.69 kcal
Atomic # 6 Polarization: -12.92 SS G_CDS: 4.93 Total: -7.99 kcal
Atomic # 7 Polarization: -91.37 SS G_CDS: -1.13 Total: -92.50 kcal
Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal
Total: -57.10 6.94 -50.16 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000045060891.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.941 kcal
(2) G-P(sol) polarization free energy of solvation -57.098 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.842 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.941 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.783 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds