Wall clock time and date at job start Sun Mar 29 2020 21:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47176 * 2 1 4 4 C 1.36928 * 120.00127 * 89.45231 * 3 2 1 5 5 H 1.08005 * 120.00219 * 33.85374 * 4 3 2 6 6 C 1.38809 * 120.00153 * 213.85427 * 4 3 2 7 7 N 1.31615 * 119.99973 * 22.84578 * 6 4 3 8 8 Si 1.86807 * 120.00296 * 202.84629 * 6 4 3 9 9 H 1.48501 * 109.46897 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47237 * 119.99555 * 8 6 4 11 11 H 1.48495 * 109.47042 * 240.00374 * 8 6 4 12 12 C 1.46499 * 119.99842 * 269.17540 * 3 2 1 13 13 C 1.50705 * 109.47276 * 270.27629 * 12 3 2 14 14 C 1.38366 * 119.84583 * 269.72472 * 13 12 3 15 15 C 1.37942 * 120.15135 * 179.76339 * 14 13 12 16 16 C 1.39637 * 119.84458 * 0.53426 * 15 14 13 17 17 C 1.43194 * 120.15282 * 179.70124 * 16 15 14 18 18 N 7.95297 * 155.39185 * 286.80951 * 2 1 3 19 19 C 1.39632 * 119.69638 * 359.72022 * 16 15 14 20 20 C 1.37950 * 119.85237 * 0.02562 * 19 16 15 21 21 H 1.08997 * 109.47276 * 300.00075 * 1 2 3 22 22 H 1.09001 * 109.47214 * 60.00161 * 1 2 3 23 23 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46894 * 239.99896 * 2 1 3 25 25 H 1.08996 * 109.47057 * 120.00282 * 2 1 3 26 26 H 0.97005 * 119.99903 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47180 * 30.27256 * 12 3 2 28 28 H 1.09000 * 109.47267 * 150.27306 * 12 3 2 29 29 H 1.07994 * 119.92205 * 0.02562 * 14 13 12 30 30 H 1.07993 * 120.08010 * 180.25818 * 15 14 13 31 31 H 1.08008 * 120.07127 * 179.97438 * 19 16 15 32 32 H 1.07995 * 119.92222 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2359 2.0305 1.1858 5 1 2.5852 1.4799 2.0468 6 6 2.0075 3.3963 1.2813 7 7 1.1880 3.9871 0.4377 8 14 2.8633 4.3961 2.6071 9 1 3.7259 3.5027 3.4213 10 1 3.6982 5.4476 1.9728 11 1 1.8456 5.0323 3.4816 12 6 2.2797 2.0657 -1.2686 13 6 3.7068 1.8212 -1.6866 14 6 4.7019 2.6936 -1.2823 15 6 6.0109 2.4732 -1.6572 16 6 6.3292 1.3728 -2.4559 17 6 7.6850 1.1413 -2.8542 18 7 8.7606 0.9577 -3.1702 19 6 5.3192 0.4996 -2.8646 20 6 4.0150 0.7290 -2.4781 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.0287 4.9417 0.5042 27 1 1.6059 1.6813 -2.0344 28 1 2.1157 3.1361 -1.1445 29 1 4.4536 3.5466 -0.6683 30 1 6.7872 3.1524 -1.3375 31 1 5.5585 -0.3532 -3.4828 32 1 3.2329 0.0545 -2.7939 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045061147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:53 Heat of formation + Delta-G solvation = 66.825411 kcal Electronic energy + Delta-G solvation = -15340.225506 eV Core-core repulsion = 12880.292502 eV Total energy + Delta-G solvation = -2459.933004 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.07080 -36.52339 -35.63789 -31.94915 -31.63092 -30.62299 -28.76279 -26.15267 -23.80886 -22.28958 -21.91954 -20.09219 -18.52163 -16.91639 -15.26153 -14.99310 -14.59257 -14.20896 -14.08874 -13.77111 -13.68485 -13.09673 -12.86065 -12.56634 -12.48066 -12.03248 -11.78029 -11.26435 -11.21230 -10.97801 -10.81635 -10.65442 -10.41591 -10.09357 -10.03166 -9.86233 -8.65566 -8.58851 -8.22872 -6.77294 -5.93088 -3.43728 1.19257 1.79604 2.85480 3.25146 3.29025 3.38265 3.41166 4.18374 4.25805 4.41094 5.18154 5.21265 5.23990 5.49164 5.68476 5.83325 5.92093 6.03636 6.22502 6.27507 6.37164 6.43594 6.54435 6.62328 6.68338 6.81694 6.90287 7.15554 7.23382 7.32431 7.56120 7.68602 7.71546 8.36610 9.03534 9.67100 10.22892 11.07455 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.008579 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.860011 B = 3262.982933 C = 4116.035227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.574 5.574 4 C -0.251 4.251 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.882 5.882 8 Si 0.890 3.110 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.289 1.289 12 C 0.162 3.838 13 C -0.037 4.037 14 C -0.103 4.103 15 C -0.072 4.072 16 C -0.067 4.067 17 C 0.270 3.730 18 N -0.449 5.449 19 C -0.074 4.074 20 C -0.127 4.127 21 H 0.055 0.945 22 H 0.044 0.956 23 H 0.031 0.969 24 H 0.035 0.965 25 H 0.042 0.958 26 H 0.256 0.744 27 H 0.038 0.962 28 H 0.112 0.888 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.280 -3.867 -4.497 6.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 N -0.293 5.293 4 C -0.380 4.380 5 H 0.081 0.919 6 C -0.191 4.191 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.216 1.216 12 C 0.036 3.964 13 C -0.041 4.041 14 C -0.122 4.122 15 C -0.093 4.093 16 C -0.071 4.071 17 C -0.044 4.044 18 N -0.126 5.126 19 C -0.094 4.094 20 C -0.146 4.146 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.130 0.870 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.841 -3.996 -4.955 7.434 hybrid contribution 0.036 0.636 0.864 1.074 sum 3.877 -3.360 -4.090 6.561 Atomic orbital electron populations 1.22258 0.99410 0.98501 1.02012 1.20899 0.92092 0.87003 0.98432 1.43808 1.73296 1.10337 1.01881 1.19136 1.37836 0.91231 0.89831 0.91874 1.25056 0.97429 0.98486 0.98091 1.69973 1.33226 1.10420 1.38810 0.86414 0.79593 0.80312 0.81722 1.19978 1.21177 1.21594 1.20222 0.86330 1.03081 0.86734 1.21610 1.00442 0.91842 0.90213 1.21084 0.91336 1.00426 0.99360 1.21124 0.97182 0.95272 0.95679 1.15867 0.85205 1.00207 1.05855 1.25938 0.92867 0.92858 0.92725 1.81183 1.11883 1.09131 1.10353 1.21003 0.92280 0.97558 0.98598 1.21008 0.95404 0.98395 0.99788 0.92614 0.93716 0.94965 0.94623 0.93927 0.93367 0.94343 0.87046 0.85136 0.86035 0.86155 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 10.24 37.16 0.38 -2.60 16 2 C 0.14 2.73 6.39 -4.04 -0.03 2.70 16 3 N -0.57 -12.82 2.43 -174.61 -0.42 -13.25 16 4 C -0.25 -6.24 9.48 -15.06 -0.14 -6.39 16 5 H 0.06 1.61 7.93 -52.48 -0.42 1.19 16 6 C 0.01 0.24 4.95 -17.43 -0.09 0.15 16 7 N -0.88 -23.10 11.32 55.49 0.63 -22.47 16 8 Si 0.89 20.01 29.61 -169.99 -5.03 14.97 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.16 3.35 5.41 -5.19 -0.03 3.33 16 13 C -0.04 -0.65 5.47 -104.53 -0.57 -1.22 16 14 C -0.10 -1.80 9.68 -39.64 -0.38 -2.18 16 15 C -0.07 -1.09 9.76 -39.17 -0.38 -1.47 16 16 C -0.07 -0.99 5.73 -106.93 -0.61 -1.60 16 17 C 0.27 4.12 15.33 -22.47 -0.34 3.77 16 18 N -0.45 -7.52 18.54 41.84 0.78 -6.75 16 19 C -0.07 -1.02 9.76 -39.17 -0.38 -1.40 16 20 C -0.13 -1.92 9.68 -39.64 -0.38 -2.31 16 21 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 22 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.04 0.61 8.05 -51.93 -0.42 0.19 16 25 H 0.04 0.82 8.04 -51.93 -0.42 0.40 16 26 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 27 H 0.04 0.75 8.01 -51.93 -0.42 0.33 16 28 H 0.11 2.63 5.26 -51.93 -0.27 2.36 16 29 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 32 H 0.12 1.66 8.04 -52.49 -0.42 1.24 16 LS Contribution 287.34 15.07 4.33 4.33 Total: -1.00 -26.39 287.34 -6.72 -33.11 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.03 Total: -0.74 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.96 Total: -9.22 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.98 Total: -42.46 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.39 -6.72 -33.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.939 kcal (2) G-P(sol) polarization free energy of solvation -26.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds