Wall clock time and date at job start Sun Mar 29 2020 21:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47176 * 2 1 4 4 C 1.36928 * 120.00127 * 89.45231 * 3 2 1 5 5 H 1.08005 * 120.00219 * 33.85374 * 4 3 2 6 6 C 1.38809 * 120.00153 * 213.85427 * 4 3 2 7 7 N 1.31615 * 119.99973 * 22.84578 * 6 4 3 8 8 Si 1.86807 * 120.00296 * 202.84629 * 6 4 3 9 9 H 1.48501 * 109.46897 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47237 * 119.99555 * 8 6 4 11 11 H 1.48495 * 109.47042 * 240.00374 * 8 6 4 12 12 C 1.46499 * 119.99842 * 269.17540 * 3 2 1 13 13 C 1.50705 * 109.47276 * 270.27629 * 12 3 2 14 14 C 1.38366 * 119.84583 * 269.72472 * 13 12 3 15 15 C 1.37942 * 120.15135 * 179.76339 * 14 13 12 16 16 C 1.39637 * 119.84458 * 0.53426 * 15 14 13 17 17 C 1.43194 * 120.15282 * 179.70124 * 16 15 14 18 18 N 7.95297 * 155.39185 * 286.80951 * 2 1 3 19 19 C 1.39632 * 119.69638 * 359.72022 * 16 15 14 20 20 C 1.37950 * 119.85237 * 0.02562 * 19 16 15 21 21 H 1.08997 * 109.47276 * 300.00075 * 1 2 3 22 22 H 1.09001 * 109.47214 * 60.00161 * 1 2 3 23 23 H 1.09002 * 109.47106 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46894 * 239.99896 * 2 1 3 25 25 H 1.08996 * 109.47057 * 120.00282 * 2 1 3 26 26 H 0.97005 * 119.99903 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47180 * 30.27256 * 12 3 2 28 28 H 1.09000 * 109.47267 * 150.27306 * 12 3 2 29 29 H 1.07994 * 119.92205 * 0.02562 * 14 13 12 30 30 H 1.07993 * 120.08010 * 180.25818 * 15 14 13 31 31 H 1.08008 * 120.07127 * 179.97438 * 19 16 15 32 32 H 1.07995 * 119.92222 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2359 2.0305 1.1858 5 1 2.5852 1.4799 2.0468 6 6 2.0075 3.3963 1.2813 7 7 1.1880 3.9871 0.4377 8 14 2.8633 4.3961 2.6071 9 1 3.7259 3.5027 3.4213 10 1 3.6982 5.4476 1.9728 11 1 1.8456 5.0323 3.4816 12 6 2.2797 2.0657 -1.2686 13 6 3.7068 1.8212 -1.6866 14 6 4.7019 2.6936 -1.2823 15 6 6.0109 2.4732 -1.6572 16 6 6.3292 1.3728 -2.4559 17 6 7.6850 1.1413 -2.8542 18 7 8.7606 0.9577 -3.1702 19 6 5.3192 0.4996 -2.8646 20 6 4.0150 0.7290 -2.4781 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.0287 4.9417 0.5042 27 1 1.6059 1.6813 -2.0344 28 1 2.1157 3.1361 -1.1445 29 1 4.4536 3.5466 -0.6683 30 1 6.7872 3.1524 -1.3375 31 1 5.5585 -0.3532 -3.4828 32 1 3.2329 0.0545 -2.7939 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045061147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:53 Heat of formation + Delta-G solvation = 54.973125 kcal Electronic energy + Delta-G solvation = -15340.739459 eV Core-core repulsion = 12880.292502 eV Total energy + Delta-G solvation = -2460.446957 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.35550 -37.96253 -37.09933 -33.74931 -33.00209 -31.85504 -30.35356 -27.76567 -25.47582 -23.54673 -23.29392 -21.70396 -19.75528 -18.68974 -16.85075 -16.35232 -16.13665 -15.74657 -15.45124 -15.36027 -14.95984 -14.37681 -14.29684 -13.98393 -13.85301 -13.47390 -13.25610 -12.95281 -12.82855 -12.55998 -12.26920 -12.21549 -12.02301 -11.80138 -11.61660 -11.44071 -10.50654 -9.80562 -9.54579 -8.57161 -7.79903 -5.34305 -0.05397 0.57952 1.46004 1.52763 1.60035 1.63222 2.01798 2.55030 2.93830 3.02311 3.29616 3.90388 4.05299 4.09556 4.31400 4.51719 4.60930 4.63369 4.84165 4.91221 4.96688 5.00983 5.13546 5.24241 5.36976 5.44710 5.49680 5.61520 5.67811 5.83498 5.98752 6.07359 6.46776 6.52100 7.20619 7.90983 8.40736 9.17071 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.023292 B = 0.008579 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.860011 B = 3262.982933 C = 4116.035227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.254 4.254 5 H 0.052 0.948 6 C -0.028 4.028 7 N -0.910 5.910 8 Si 0.939 3.061 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.296 1.296 12 C 0.167 3.833 13 C -0.051 4.051 14 C -0.120 4.120 15 C -0.067 4.067 16 C -0.061 4.061 17 C 0.289 3.711 18 N -0.471 5.471 19 C -0.058 4.058 20 C -0.121 4.121 21 H 0.024 0.976 22 H 0.036 0.964 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.252 0.748 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.155 0.845 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.363 -5.495 -5.550 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 N -0.310 5.310 4 C -0.384 4.384 5 H 0.070 0.930 6 C -0.226 4.226 7 N -0.554 5.554 8 Si 0.768 3.232 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.223 1.223 12 C 0.041 3.959 13 C -0.055 4.055 14 C -0.139 4.139 15 C -0.087 4.087 16 C -0.065 4.065 17 C -0.025 4.025 18 N -0.148 5.148 19 C -0.078 4.078 20 C -0.140 4.140 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.157 0.843 31 H 0.172 0.828 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.945 -5.642 -6.021 9.620 hybrid contribution -0.257 1.071 1.114 1.567 sum 4.688 -4.571 -4.907 8.182 Atomic orbital electron populations 1.22137 0.98897 1.00085 1.00039 1.21049 0.92468 0.85708 0.99621 1.43992 1.74172 1.11234 1.01562 1.19206 1.37046 0.91486 0.90682 0.93002 1.25509 0.98142 0.99219 0.99684 1.70074 1.34801 1.10141 1.40406 0.85663 0.78536 0.79162 0.79876 1.19746 1.21070 1.22346 1.20018 0.88487 1.01045 0.86344 1.21348 0.98634 0.93436 0.92065 1.20949 0.92496 1.00270 1.00153 1.21201 0.96538 0.95748 0.95233 1.15917 0.85207 1.00021 1.05327 1.25817 0.92551 0.92124 0.92019 1.81222 1.12523 1.09916 1.11115 1.21314 0.91173 0.97807 0.97549 1.21148 0.96673 0.97434 0.98697 0.95671 0.94495 0.91548 0.91838 0.94166 0.93876 0.93586 0.90292 0.87406 0.84335 0.82758 0.83748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 10.24 71.98 0.74 -4.68 16 2 C 0.14 5.07 6.39 86.38 0.55 5.62 16 3 N -0.59 -26.27 2.43 -706.34 -1.72 -27.99 16 4 C -0.25 -12.83 9.48 84.03 0.80 -12.03 16 5 H 0.05 2.69 7.93 -2.91 -0.02 2.67 16 6 C -0.03 -1.44 4.95 84.86 0.42 -1.02 16 7 N -0.91 -49.17 11.32 21.65 0.25 -48.93 16 8 Si 0.94 42.03 29.61 68.60 2.03 44.06 16 9 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 12 C 0.17 6.89 5.41 85.63 0.46 7.36 16 13 C -0.05 -1.76 5.47 -19.80 -0.11 -1.87 16 14 C -0.12 -4.11 9.68 22.23 0.22 -3.90 16 15 C -0.07 -1.90 9.76 22.54 0.22 -1.68 16 16 C -0.06 -1.59 5.73 -21.36 -0.12 -1.71 16 17 C 0.29 7.89 15.33 88.33 1.35 9.25 16 18 N -0.47 -14.53 18.54 19.00 0.35 -14.18 16 19 C -0.06 -1.36 9.76 22.54 0.22 -1.14 16 20 C -0.12 -3.26 9.68 22.23 0.22 -3.05 16 21 H 0.02 1.01 8.14 -2.39 -0.02 1.00 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.06 1.98 8.05 -2.38 -0.02 1.96 16 25 H 0.04 1.49 8.04 -2.39 -0.02 1.48 16 26 H 0.25 13.25 8.31 -92.70 -0.77 12.47 16 27 H 0.05 1.77 8.01 -2.38 -0.02 1.75 16 28 H 0.08 3.85 5.26 -2.39 -0.01 3.84 16 29 H 0.11 4.17 8.06 -2.91 -0.02 4.14 16 30 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.14 3.28 8.04 -2.91 -0.02 3.26 16 Total: -1.00 -56.98 287.34 6.98 -50.00 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 1.10 Total: 5.88 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 4.96 Total: -8.85 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -1.12 Total: -91.09 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -56.98 6.98 -50.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045061147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.972 kcal (2) G-P(sol) polarization free energy of solvation -56.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds