Wall clock time and date at job start Sun Mar 29 2020 21:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30105 * 124.95618 * 2 1 4 4 C 1.35784 * 109.64857 * 179.97438 * 3 2 1 5 5 C 1.39747 * 133.60087 * 180.02562 * 4 3 2 6 6 C 1.36602 * 119.88190 * 179.97438 * 5 4 3 7 7 C 1.38779 * 120.66936 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.76804 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47542 * 269.97918 * 8 7 6 10 10 C 1.50699 * 109.47543 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99199 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00110 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00122 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99797 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47023 * 90.00143 * 14 12 10 16 16 H 1.48497 * 109.47434 * 210.00275 * 14 12 10 17 17 H 1.48501 * 109.47208 * 330.00344 * 14 12 10 18 18 C 1.37850 * 120.45381 * 0.02562 * 7 6 5 19 19 C 1.38834 * 119.68902 * 359.97438 * 18 7 6 20 20 N 1.36039 * 124.95016 * 179.97438 * 2 1 3 21 21 H 0.97002 * 126.34788 * 359.97438 * 20 2 1 22 22 H 1.08996 * 109.46668 * 90.02667 * 1 2 3 23 23 H 1.09000 * 109.47297 * 210.02619 * 1 2 3 24 24 H 1.09002 * 109.46613 * 330.02566 * 1 2 3 25 25 H 1.07998 * 120.05391 * 359.95854 * 5 4 3 26 26 H 1.08001 * 119.66175 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.46957 * 29.98234 * 8 7 6 28 28 H 1.08998 * 109.46169 * 149.97939 * 8 7 6 29 29 H 1.09005 * 109.46974 * 300.00511 * 9 8 7 30 30 H 1.08999 * 109.47164 * 60.00251 * 9 8 7 31 31 H 0.97001 * 120.00121 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.15398 * 179.97438 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5621 0.7079 0.0006 5 6 4.7588 1.4295 0.0013 6 6 5.9533 0.7667 0.0023 7 6 5.9931 -0.6205 0.0021 8 6 7.3222 -1.3309 0.0037 9 6 7.7738 -1.5716 -1.4381 10 6 9.1025 -2.2825 -1.4364 11 1 9.5771 -2.5376 -0.5003 12 6 9.7116 -2.6082 -2.6296 13 7 9.1334 -2.2980 -3.7692 14 14 11.3590 -3.4889 -2.6274 15 1 11.1355 -4.9570 -2.6268 16 1 12.1269 -3.1056 -3.8393 17 1 12.1244 -3.1042 -1.4143 18 6 4.8253 -1.3530 0.0003 19 6 3.6019 -0.6966 -0.0007 20 7 2.2863 -1.1150 0.0005 21 1 1.9753 -2.0338 0.0013 22 1 -0.3632 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3632 0.8903 0.5135 25 1 4.7393 2.5093 0.0008 26 1 6.8760 1.3280 0.0024 27 1 8.0615 -0.7173 0.5185 28 1 7.2223 -2.2870 0.5176 29 1 7.0344 -2.1852 -1.9528 30 1 7.8736 -0.6155 -1.9519 31 1 9.5621 -2.5269 -4.6087 32 1 4.8619 -2.4323 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082589039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:16 Heat of formation + Delta-G solvation = 45.580894 kcal Electronic energy + Delta-G solvation = -14829.966802 eV Core-core repulsion = 12369.112567 eV Total energy + Delta-G solvation = -2460.854235 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.89014 -37.60378 -33.80481 -32.90194 -31.89632 -30.60532 -29.25812 -27.26278 -24.58463 -22.23846 -21.80927 -20.75064 -20.10613 -17.42593 -16.77916 -16.22094 -15.36237 -14.88121 -14.47245 -13.94753 -13.57649 -13.25990 -13.15652 -12.74340 -12.47862 -12.41726 -11.71099 -11.46426 -11.27452 -10.91908 -10.78941 -10.57933 -10.36620 -9.87833 -9.76129 -9.48735 -9.09605 -8.35362 -8.04598 -7.59279 -5.99609 -4.02920 1.27493 1.87126 2.96196 3.01164 3.31866 3.38331 3.41619 4.20225 4.22473 4.46314 4.76672 5.09027 5.26570 5.33796 5.35937 5.42870 5.60238 5.66670 5.73301 5.81378 6.12300 6.27819 6.43968 6.64919 6.73840 6.81110 6.99036 7.12750 7.28421 7.47858 7.68397 7.82268 8.00370 8.05413 8.40439 9.04286 9.61197 11.11362 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053800 B = 0.004783 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.318360 B = 5852.215072 C = 6029.285559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.264 3.736 3 N -0.493 5.493 4 C 0.029 3.971 5 C -0.068 4.068 6 C -0.120 4.120 7 C -0.035 4.035 8 C -0.078 4.078 9 C 0.029 3.971 10 C -0.523 4.523 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.122 4.122 19 C 0.054 3.946 20 N -0.602 5.602 21 H 0.419 0.581 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.124 0.876 26 H 0.130 0.870 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.260 0.740 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.759 2.697 8.016 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.003 4.003 3 N -0.215 5.215 4 C -0.088 4.088 5 C -0.088 4.088 6 C -0.140 4.140 7 C -0.036 4.036 8 C -0.115 4.115 9 C -0.008 4.008 10 C -0.561 4.561 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.143 4.143 19 C -0.055 4.055 20 N -0.215 5.215 21 H 0.257 0.743 22 H 0.103 0.897 23 H 0.095 0.905 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.147 0.853 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.979 3.598 7.825 17.278 hybrid contribution 1.017 -1.855 -0.247 2.130 sum -13.962 1.743 7.578 15.981 Atomic orbital electron populations 1.20294 0.84648 1.04254 1.03915 1.23457 0.95428 0.81323 1.00110 1.70296 1.01237 1.27668 1.22255 1.18959 0.91707 0.90507 1.07628 1.19945 0.89178 0.99353 1.00308 1.20667 0.97414 0.94054 1.01831 1.20130 0.95521 0.93475 0.94496 1.20842 0.90521 0.98335 1.01823 1.19085 0.95836 0.97169 0.88698 1.21259 1.04877 1.37608 0.92353 0.92548 1.25020 0.97721 0.95998 0.95647 1.69971 1.38881 1.47210 0.97271 0.86599 0.83995 0.79888 0.77547 1.20710 1.21222 1.19815 1.19828 0.88389 0.99462 1.06582 1.18885 0.85120 0.95338 1.06139 1.42947 1.05061 1.09510 1.63977 0.74310 0.89696 0.90520 0.88866 0.85788 0.85253 0.91815 0.92194 0.96508 0.96236 0.92984 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.51 36.01 0.38 -0.16 16 2 C 0.26 3.42 8.08 -154.83 -1.25 2.17 16 3 N -0.49 -8.18 11.27 -8.23 -0.09 -8.27 16 4 C 0.03 0.51 7.23 -84.70 -0.61 -0.10 16 5 C -0.07 -1.15 10.05 -39.61 -0.40 -1.55 16 6 C -0.12 -2.07 9.61 -39.97 -0.38 -2.46 16 7 C -0.03 -0.64 5.14 -104.56 -0.54 -1.18 16 8 C -0.08 -1.60 5.27 -27.88 -0.15 -1.75 16 9 C 0.03 0.75 4.95 -27.89 -0.14 0.62 16 10 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 14 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 C -0.12 -2.12 9.71 -39.50 -0.38 -2.51 16 19 C 0.05 0.90 7.31 -83.99 -0.61 0.29 16 20 N -0.60 -7.78 6.23 -8.00 -0.05 -7.83 16 21 H 0.42 3.84 8.96 -40.82 -0.37 3.48 16 22 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 26 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 27 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 28 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 280.13 15.07 4.22 4.22 Total: -1.00 -33.42 280.13 -8.83 -42.25 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -4.13 Total: -0.54 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -4.50 Total: -20.09 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.59 Total: -42.37 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.42 -8.83 -42.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.829 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds