Wall clock time and date at job start Sun Mar 29 2020 21:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30105 * 124.95618 * 2 1 4 4 C 1.35784 * 109.64857 * 179.97438 * 3 2 1 5 5 C 1.39747 * 133.60087 * 180.02562 * 4 3 2 6 6 C 1.36602 * 119.88190 * 179.97438 * 5 4 3 7 7 C 1.38779 * 120.66936 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.76804 * 180.02562 * 7 6 5 9 9 C 1.52992 * 109.47542 * 269.97918 * 8 7 6 10 10 C 1.50699 * 109.47543 * 180.02562 * 9 8 7 11 11 H 1.08005 * 119.99199 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00110 * 179.97438 * 10 9 8 13 13 N 1.31505 * 120.00122 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99797 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47023 * 90.00143 * 14 12 10 16 16 H 1.48497 * 109.47434 * 210.00275 * 14 12 10 17 17 H 1.48501 * 109.47208 * 330.00344 * 14 12 10 18 18 C 1.37850 * 120.45381 * 0.02562 * 7 6 5 19 19 C 1.38834 * 119.68902 * 359.97438 * 18 7 6 20 20 N 1.36039 * 124.95016 * 179.97438 * 2 1 3 21 21 H 0.97002 * 126.34788 * 359.97438 * 20 2 1 22 22 H 1.08996 * 109.46668 * 90.02667 * 1 2 3 23 23 H 1.09000 * 109.47297 * 210.02619 * 1 2 3 24 24 H 1.09002 * 109.46613 * 330.02566 * 1 2 3 25 25 H 1.07998 * 120.05391 * 359.95854 * 5 4 3 26 26 H 1.08001 * 119.66175 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.46957 * 29.98234 * 8 7 6 28 28 H 1.08998 * 109.46169 * 149.97939 * 8 7 6 29 29 H 1.09005 * 109.46974 * 300.00511 * 9 8 7 30 30 H 1.08999 * 109.47164 * 60.00251 * 9 8 7 31 31 H 0.97001 * 120.00121 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.15398 * 179.97438 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5621 0.7079 0.0006 5 6 4.7588 1.4295 0.0013 6 6 5.9533 0.7667 0.0023 7 6 5.9931 -0.6205 0.0021 8 6 7.3222 -1.3309 0.0037 9 6 7.7738 -1.5716 -1.4381 10 6 9.1025 -2.2825 -1.4364 11 1 9.5771 -2.5376 -0.5003 12 6 9.7116 -2.6082 -2.6296 13 7 9.1334 -2.2980 -3.7692 14 14 11.3590 -3.4889 -2.6274 15 1 11.1355 -4.9570 -2.6268 16 1 12.1269 -3.1056 -3.8393 17 1 12.1244 -3.1042 -1.4143 18 6 4.8253 -1.3530 0.0003 19 6 3.6019 -0.6966 -0.0007 20 7 2.2863 -1.1150 0.0005 21 1 1.9753 -2.0338 0.0013 22 1 -0.3632 -0.0005 -1.0277 23 1 -0.3634 -0.8897 0.5142 24 1 -0.3632 0.8903 0.5135 25 1 4.7393 2.5093 0.0008 26 1 6.8760 1.3280 0.0024 27 1 8.0615 -0.7173 0.5185 28 1 7.2223 -2.2870 0.5176 29 1 7.0344 -2.1852 -1.9528 30 1 7.8736 -0.6155 -1.9519 31 1 9.5621 -2.5269 -4.6087 32 1 4.8619 -2.4323 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082589039.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:16 Heat of formation + Delta-G solvation = 25.205482 kcal Electronic energy + Delta-G solvation = -14830.850346 eV Core-core repulsion = 12369.112567 eV Total energy + Delta-G solvation = -2461.737779 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.06448 -38.95063 -35.67934 -34.23322 -33.45020 -31.79278 -30.63999 -28.71047 -26.33726 -23.57944 -23.43714 -21.90390 -21.60091 -18.70275 -18.44445 -17.86602 -16.54229 -16.42582 -16.23121 -15.27013 -14.86067 -14.55595 -14.45686 -14.00025 -13.89339 -13.60374 -13.24877 -12.97071 -12.83572 -12.59700 -12.32074 -12.25493 -11.76685 -11.70557 -11.35154 -11.18384 -10.96919 -10.54396 -9.30954 -8.93070 -8.17930 -6.30165 0.01901 0.54659 1.41844 1.43256 1.54567 1.79660 1.96726 2.42581 2.88203 3.15046 3.22172 3.67840 4.03798 4.20405 4.24684 4.41209 4.49078 4.61239 4.72928 4.73994 4.86720 4.89929 5.06183 5.13309 5.20867 5.42295 5.51650 5.53367 5.57062 5.85769 5.88435 5.95216 6.24429 6.50615 6.87132 6.90718 7.39441 8.93516 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.053800 B = 0.004783 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.318360 B = 5852.215072 C = 6029.285559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.282 3.718 3 N -0.533 5.533 4 C 0.011 3.989 5 C -0.076 4.076 6 C -0.125 4.125 7 C -0.061 4.061 8 C -0.061 4.061 9 C 0.036 3.964 10 C -0.543 4.543 11 H 0.065 0.935 12 C -0.001 4.001 13 N -0.935 5.935 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.261 1.261 18 C -0.121 4.121 19 C 0.038 3.962 20 N -0.591 5.591 21 H 0.437 0.563 22 H 0.102 0.898 23 H 0.109 0.891 24 H 0.100 0.900 25 H 0.141 0.859 26 H 0.138 0.862 27 H 0.070 0.930 28 H 0.067 0.933 29 H -0.012 1.012 30 H -0.009 1.009 31 H 0.263 0.737 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.804 1.998 8.912 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.015 3.985 3 N -0.255 5.255 4 C -0.106 4.106 5 C -0.096 4.096 6 C -0.145 4.145 7 C -0.063 4.063 8 C -0.099 4.099 9 C -0.002 4.002 10 C -0.580 4.580 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.790 3.210 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.142 4.142 19 C -0.072 4.072 20 N -0.205 5.205 21 H 0.279 0.721 22 H 0.121 0.879 23 H 0.127 0.873 24 H 0.119 0.881 25 H 0.158 0.842 26 H 0.156 0.844 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.042 2.872 8.742 18.494 hybrid contribution 1.152 -1.619 -0.533 2.057 sum -14.890 1.253 8.209 17.049 Atomic orbital electron populations 1.20595 0.80456 1.06270 1.05620 1.24559 0.97415 0.80344 0.96189 1.70338 1.00868 1.29402 1.24914 1.19346 0.92627 0.91251 1.07336 1.20141 0.88950 1.00285 1.00218 1.20771 0.98163 0.93727 1.01859 1.19998 0.94959 0.94117 0.97235 1.20548 0.91914 0.99190 0.98201 1.18930 0.94707 0.94835 0.91679 1.21726 1.05809 1.37629 0.92878 0.91656 1.25993 1.01896 0.96770 0.95169 1.70117 1.40847 1.48548 0.98030 0.85434 0.78906 0.78702 0.77922 1.19773 1.20949 1.18482 1.19920 0.88583 0.99900 1.05759 1.18909 0.86316 0.95241 1.06714 1.42974 1.03640 1.10763 1.63105 0.72132 0.87924 0.87259 0.88091 0.84152 0.84377 0.91094 0.91467 0.99335 0.99083 0.92843 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.51 71.24 0.75 -0.05 16 2 C 0.28 6.65 8.08 137.92 1.11 7.76 16 3 N -0.53 -17.06 11.27 -179.96 -2.03 -19.09 16 4 C 0.01 0.40 7.23 39.45 0.29 0.69 16 5 C -0.08 -2.59 10.05 22.25 0.22 -2.37 16 6 C -0.13 -4.42 9.61 22.02 0.21 -4.21 16 7 C -0.06 -2.33 5.14 -19.82 -0.10 -2.43 16 8 C -0.06 -2.55 5.27 29.85 0.16 -2.40 16 9 C 0.04 1.91 4.95 29.85 0.15 2.06 16 10 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 11 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 12 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 13 N -0.94 -57.66 13.29 21.44 0.28 -57.38 16 14 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 18 C -0.12 -4.23 9.71 22.32 0.22 -4.01 16 19 C 0.04 1.25 7.31 38.86 0.28 1.53 16 20 N -0.59 -14.07 6.23 -179.23 -1.12 -15.19 16 21 H 0.44 6.88 8.96 -92.71 -0.83 6.05 16 22 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 26 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 27 H 0.07 2.80 8.08 -2.39 -0.02 2.79 16 28 H 0.07 2.65 8.08 -2.39 -0.02 2.63 16 29 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 30 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 32 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -73.24 280.13 3.44 -69.80 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.29 Total: 9.26 kcal Atomic # 6 Polarization: -37.63 SS G_CDS: 3.98 Total: -33.65 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -2.86 Total: -91.66 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -73.24 3.44 -69.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082589039.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.005 kcal (2) G-P(sol) polarization free energy of solvation -73.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds