Wall clock time and date at job start Sun Mar 29 2020 21:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47068 * 2 1 4 4 C 1.50700 * 109.47374 * 120.00519 * 2 1 3 5 5 H 1.07994 * 120.00286 * 119.99820 * 4 2 1 6 6 C 1.37882 * 119.99788 * 300.00088 * 4 2 1 7 7 N 1.31519 * 119.99669 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00034 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47594 * 89.99729 * 8 6 4 10 10 H 1.48502 * 109.47190 * 210.00340 * 8 6 4 11 11 H 1.48504 * 109.47169 * 329.99902 * 8 6 4 12 12 N 1.46902 * 109.47027 * 240.00475 * 2 1 3 13 13 C 1.46898 * 110.99918 * 85.00043 * 12 2 1 14 14 C 1.50700 * 109.47035 * 179.97438 * 13 12 2 15 15 C 1.37972 * 120.07852 * 260.29996 * 14 13 12 16 16 C 1.38342 * 120.15304 * 180.30552 * 15 14 13 17 17 C 1.38379 * 120.30369 * 359.67043 * 16 15 14 18 18 C 1.37927 * 120.15532 * 0.02562 * 17 16 15 19 19 C 1.39616 * 120.08070 * 79.99975 * 14 13 12 20 20 C 1.43205 * 120.14614 * 359.97438 * 19 14 13 21 21 N 4.52683 * 59.89569 * 246.63070 * 2 1 3 22 22 H 1.09005 * 109.47045 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47350 * 299.99291 * 1 2 3 24 24 H 1.08998 * 109.47427 * 59.99947 * 1 2 3 25 25 H 0.96997 * 119.99733 * 180.02562 * 7 6 4 26 26 H 1.00898 * 111.00130 * 321.04218 * 12 2 1 27 27 H 1.09005 * 109.47514 * 59.99952 * 13 12 2 28 28 H 1.09001 * 109.47138 * 299.99520 * 13 12 2 29 29 H 1.08002 * 119.92431 * 359.97224 * 15 14 13 30 30 H 1.08001 * 119.85070 * 179.69705 * 16 15 14 31 31 H 1.08001 * 119.92801 * 180.02562 * 17 16 15 32 32 H 1.07994 * 120.08375 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8593 3.5565 8 14 0.6247 1.2787 2.6542 9 1 -0.8028 0.8724 2.6998 10 1 0.9759 1.9948 3.9069 11 1 0.8469 2.1763 1.4922 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 3.9110 -0.4100 -3.9326 16 6 4.3758 -1.0873 -5.0458 17 6 3.5206 -1.8857 -5.7847 18 6 2.1975 -2.0109 -5.4157 19 6 1.7215 -1.3297 -4.2934 20 6 0.3492 -1.4553 -3.9041 21 7 -0.7405 -1.5534 -3.5950 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.9035 -0.5282 4.4375 26 1 1.4496 -1.4978 -1.4101 27 1 2.7588 1.0464 -2.1182 28 1 1.0870 0.6165 -2.5525 29 1 4.5839 0.2115 -3.3604 30 1 5.4108 -0.9929 -5.3392 31 1 3.8899 -2.4121 -6.6524 32 1 1.5312 -2.6347 -5.9930 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134970804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:32 Heat of formation + Delta-G solvation = 59.218007 kcal Electronic energy + Delta-G solvation = -15151.583990 eV Core-core repulsion = 12691.321104 eV Total energy + Delta-G solvation = -2460.262886 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70052 -36.45274 -36.16593 -33.03047 -31.51857 -31.32923 -28.89564 -25.33574 -24.77458 -23.58411 -21.49128 -20.25996 -18.68786 -16.82864 -15.95251 -15.73853 -15.01713 -14.65864 -14.38286 -13.96528 -13.55315 -13.32001 -12.98802 -12.77794 -12.67070 -12.41244 -12.22219 -11.89996 -11.63350 -11.51184 -11.03478 -10.95607 -10.44915 -10.12953 -9.56159 -9.18534 -9.01207 -8.86664 -8.56464 -7.52659 -6.04655 -4.02229 0.74577 1.26165 2.74129 2.98824 3.26545 3.35267 3.38162 3.83002 3.92528 4.40323 4.67927 4.75722 4.88038 5.16362 5.24428 5.28203 5.35124 5.58995 5.69834 5.87473 5.98001 6.16525 6.19996 6.27145 6.32469 6.47171 6.50578 6.70604 6.75313 7.08720 7.55006 7.66623 7.83375 8.18912 8.67144 9.06510 9.57560 11.08798 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036250 B = 0.006575 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.233802 B = 4257.457616 C = 4650.908383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.183 3.817 3 H 0.036 0.964 4 C -0.498 4.498 5 H 0.083 0.917 6 C 0.068 3.932 7 N -0.900 5.900 8 Si 0.885 3.115 9 H -0.281 1.281 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.662 5.662 13 C 0.081 3.919 14 C -0.018 4.018 15 C -0.102 4.102 16 C -0.091 4.091 17 C -0.129 4.129 18 C -0.073 4.073 19 C -0.030 4.030 20 C 0.250 3.750 21 N -0.413 5.413 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.024 0.976 25 H 0.263 0.737 26 H 0.330 0.670 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 1.123 -18.889 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.074 3.926 3 H 0.054 0.946 4 C -0.537 4.537 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.716 3.284 9 H -0.208 1.208 10 H -0.223 1.223 11 H -0.195 1.195 12 N -0.292 5.292 13 C -0.048 4.048 14 C -0.021 4.021 15 C -0.121 4.121 16 C -0.109 4.109 17 C -0.148 4.148 18 C -0.093 4.093 19 C -0.034 4.034 20 C -0.065 4.065 21 N -0.088 5.088 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.148 0.852 27 H 0.104 0.896 28 H 0.049 0.951 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.362 1.064 -18.018 18.204 hybrid contribution -1.259 0.891 -0.037 1.542 sum 1.104 1.955 -18.055 18.194 Atomic orbital electron populations 1.22849 1.01378 1.00990 0.98856 1.19689 0.88609 0.95182 0.89088 0.94592 1.20946 1.31288 1.13823 0.87607 0.89928 1.24926 0.95919 0.96613 0.95855 1.69880 1.45819 1.40320 0.97829 0.86908 0.80676 0.83944 0.76885 1.20791 1.22339 1.19494 1.60769 1.58013 1.08357 1.02016 1.21103 0.99201 0.95711 0.88773 1.20088 0.93260 0.94252 0.94527 1.21059 0.94350 1.00038 0.96644 1.21394 0.99899 0.95240 0.94404 1.21025 0.93061 0.99989 1.00695 1.21093 0.96173 0.97433 0.94610 1.15967 0.85945 1.02935 0.98532 1.25764 0.92883 0.94004 0.93826 1.81296 1.11974 1.07911 1.07637 0.92781 0.93503 0.95658 0.92659 0.85247 0.89589 0.95094 0.84649 0.85361 0.85278 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.16 8.64 37.16 0.32 -3.84 16 2 C 0.18 4.37 2.16 -68.86 -0.15 4.22 16 3 H 0.04 0.87 6.86 -51.93 -0.36 0.52 16 4 C -0.50 -14.20 9.42 -34.44 -0.32 -14.52 16 5 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 8 Si 0.89 22.26 24.37 -169.99 -4.14 18.12 16 9 H -0.28 -6.98 6.87 56.52 0.39 -6.59 16 10 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 11 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.66 -13.55 6.22 -109.22 -0.68 -14.23 16 13 C 0.08 1.33 5.08 -4.98 -0.03 1.31 16 14 C -0.02 -0.24 5.43 -104.21 -0.57 -0.81 16 15 C -0.10 -1.14 9.66 -39.64 -0.38 -1.52 16 16 C -0.09 -0.79 10.04 -39.49 -0.40 -1.19 16 17 C -0.13 -1.07 10.03 -39.64 -0.40 -1.47 16 18 C -0.07 -0.71 9.76 -39.17 -0.38 -1.10 16 19 C -0.03 -0.38 5.73 -106.93 -0.61 -1.00 16 20 C 0.25 3.80 13.32 -22.44 -0.30 3.50 16 21 N -0.41 -7.16 18.54 41.88 0.78 -6.38 16 22 H 0.05 1.24 8.13 -51.93 -0.42 0.82 16 23 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 24 H 0.02 0.51 7.45 -51.93 -0.39 0.13 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.33 6.77 7.76 -39.29 -0.30 6.47 16 27 H 0.09 1.33 7.92 -51.93 -0.41 0.92 16 28 H 0.03 0.52 6.77 -51.93 -0.35 0.17 16 29 H 0.14 1.37 8.04 -52.49 -0.42 0.95 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -31.85 275.06 -6.14 -37.99 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -3.70 Total: 1.92 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -3.31 Total: -14.53 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.87 Total: -47.64 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.85 -6.14 -37.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134970804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.205 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds