Wall clock time and date at job start Sun Mar 29 2020 21:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47068 * 2 1 4 4 C 1.50700 * 109.47374 * 120.00519 * 2 1 3 5 5 H 1.07994 * 120.00286 * 119.99820 * 4 2 1 6 6 C 1.37882 * 119.99788 * 300.00088 * 4 2 1 7 7 N 1.31519 * 119.99669 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00034 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47594 * 89.99729 * 8 6 4 10 10 H 1.48502 * 109.47190 * 210.00340 * 8 6 4 11 11 H 1.48504 * 109.47169 * 329.99902 * 8 6 4 12 12 N 1.46902 * 109.47027 * 240.00475 * 2 1 3 13 13 C 1.46898 * 110.99918 * 85.00043 * 12 2 1 14 14 C 1.50700 * 109.47035 * 179.97438 * 13 12 2 15 15 C 1.37972 * 120.07852 * 260.29996 * 14 13 12 16 16 C 1.38342 * 120.15304 * 180.30552 * 15 14 13 17 17 C 1.38379 * 120.30369 * 359.67043 * 16 15 14 18 18 C 1.37927 * 120.15532 * 0.02562 * 17 16 15 19 19 C 1.39616 * 120.08070 * 79.99975 * 14 13 12 20 20 C 1.43205 * 120.14614 * 359.97438 * 19 14 13 21 21 N 4.52683 * 59.89569 * 246.63070 * 2 1 3 22 22 H 1.09005 * 109.47045 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47350 * 299.99291 * 1 2 3 24 24 H 1.08998 * 109.47427 * 59.99947 * 1 2 3 25 25 H 0.96997 * 119.99733 * 180.02562 * 7 6 4 26 26 H 1.00898 * 111.00130 * 321.04218 * 12 2 1 27 27 H 1.09005 * 109.47514 * 59.99952 * 13 12 2 28 28 H 1.09001 * 109.47138 * 299.99520 * 13 12 2 29 29 H 1.08002 * 119.92431 * 359.97224 * 15 14 13 30 30 H 1.08001 * 119.85070 * 179.69705 * 16 15 14 31 31 H 1.08001 * 119.92801 * 180.02562 * 17 16 15 32 32 H 1.07994 * 120.08375 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8593 3.5565 8 14 0.6247 1.2787 2.6542 9 1 -0.8028 0.8724 2.6998 10 1 0.9759 1.9948 3.9069 11 1 0.8469 2.1763 1.4922 12 7 2.0196 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 6 3.9110 -0.4100 -3.9326 16 6 4.3758 -1.0873 -5.0458 17 6 3.5206 -1.8857 -5.7847 18 6 2.1975 -2.0109 -5.4157 19 6 1.7215 -1.3297 -4.2934 20 6 0.3492 -1.4553 -3.9041 21 7 -0.7405 -1.5534 -3.5950 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.9035 -0.5282 4.4375 26 1 1.4496 -1.4978 -1.4101 27 1 2.7588 1.0464 -2.1182 28 1 1.0870 0.6165 -2.5525 29 1 4.5839 0.2115 -3.3604 30 1 5.4108 -0.9929 -5.3392 31 1 3.8899 -2.4121 -6.6524 32 1 1.5312 -2.6347 -5.9930 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134970804.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:31 Heat of formation + Delta-G solvation = 37.204265 kcal Electronic energy + Delta-G solvation = -15152.538577 eV Core-core repulsion = 12691.321104 eV Total energy + Delta-G solvation = -2461.217473 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.62152 -37.97478 -37.44748 -34.80094 -33.11690 -32.18005 -30.38712 -27.25082 -26.20967 -24.49616 -22.48258 -22.17096 -19.64252 -18.82510 -17.21495 -16.87603 -16.53165 -16.05468 -15.62233 -15.23675 -14.97248 -14.69187 -14.48014 -14.12231 -13.98249 -13.91304 -13.73552 -13.12559 -13.08300 -12.93030 -12.62408 -12.16961 -12.09521 -11.84786 -11.52566 -11.26216 -10.79635 -9.83229 -9.77535 -9.15620 -8.30176 -6.32784 -0.14116 0.45946 1.26984 1.30945 1.41462 1.59181 1.98192 2.28514 2.89269 2.90494 3.03206 3.53449 3.81891 3.89599 4.18598 4.31032 4.39169 4.41036 4.52515 4.56642 4.68445 4.70066 4.85101 4.88811 5.10649 5.23683 5.41945 5.54307 5.59461 5.62560 5.92098 6.00830 6.42326 6.51496 6.59329 6.73907 7.31555 8.87084 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.036250 B = 0.006575 C = 0.006019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.233802 B = 4257.457616 C = 4650.908383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.188 3.812 3 H 0.039 0.961 4 C -0.504 4.504 5 H 0.039 0.961 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.274 1.274 10 H -0.293 1.293 11 H -0.248 1.248 12 N -0.670 5.670 13 C 0.084 3.916 14 C -0.039 4.039 15 C -0.111 4.111 16 C -0.079 4.079 17 C -0.116 4.116 18 C -0.068 4.068 19 C -0.052 4.052 20 C 0.268 3.732 21 N -0.464 5.464 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.266 0.734 26 H 0.327 0.673 27 H 0.092 0.908 28 H 0.025 0.975 29 H 0.141 0.859 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 1.951 -21.585 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.079 3.921 3 H 0.057 0.943 4 C -0.543 4.543 5 H 0.057 0.943 6 C -0.185 4.185 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.200 1.200 10 H -0.220 1.220 11 H -0.172 1.172 12 N -0.300 5.300 13 C -0.044 4.044 14 C -0.042 4.042 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.134 4.134 18 C -0.088 4.088 19 C -0.056 4.056 20 C -0.046 4.046 21 N -0.140 5.140 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.110 0.890 28 H 0.043 0.957 29 H 0.159 0.841 30 H 0.180 0.820 31 H 0.185 0.815 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.108 1.895 -20.750 21.067 hybrid contribution -1.323 0.528 0.678 1.577 sum 1.785 2.423 -20.072 20.296 Atomic orbital electron populations 1.22713 1.00334 1.00682 0.99566 1.19456 0.89222 0.94679 0.88782 0.94335 1.21206 1.30429 1.12678 0.89947 0.94314 1.25764 0.97400 0.99963 0.95379 1.70031 1.47759 1.42489 0.98532 0.85870 0.78788 0.80230 0.77590 1.20049 1.22039 1.17192 1.60616 1.57627 1.08971 1.02747 1.21104 0.99268 0.95513 0.88548 1.19868 0.94568 0.95653 0.94120 1.21234 0.93322 1.00645 0.97762 1.21808 1.01577 0.93518 0.92818 1.21499 0.91970 0.98830 1.01127 1.21413 0.97419 0.96602 0.93374 1.16134 0.84669 1.04553 1.00205 1.26249 0.93243 0.92582 0.92543 1.81292 1.13513 1.09865 1.09355 0.93710 0.94119 0.93388 0.92486 0.85593 0.88965 0.95710 0.84110 0.82013 0.81475 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.83 8.64 71.98 0.62 -7.21 16 2 C 0.19 8.98 2.16 44.17 0.10 9.08 16 3 H 0.04 1.83 6.86 -2.39 -0.02 1.82 16 4 C -0.50 -29.52 9.42 25.60 0.24 -29.28 16 5 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 6 C 0.01 0.71 5.45 84.66 0.46 1.18 16 7 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 8 Si 0.95 45.82 24.37 68.60 1.67 47.50 16 9 H -0.27 -12.89 6.87 99.48 0.68 -12.20 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 11 H -0.25 -11.03 6.53 99.48 0.65 -10.38 16 12 N -0.67 -27.63 6.22 -499.46 -3.11 -30.74 16 13 C 0.08 2.71 5.08 85.56 0.43 3.14 16 14 C -0.04 -1.00 5.43 -19.59 -0.11 -1.11 16 15 C -0.11 -2.19 9.66 22.23 0.21 -1.98 16 16 C -0.08 -1.04 10.04 22.33 0.22 -0.81 16 17 C -0.12 -1.37 10.03 22.23 0.22 -1.15 16 18 C -0.07 -1.12 9.76 22.54 0.22 -0.90 16 19 C -0.05 -1.25 5.73 -21.36 -0.12 -1.37 16 20 C 0.27 8.05 13.32 88.32 1.18 9.22 16 21 N -0.46 -16.23 18.54 19.02 0.35 -15.88 16 22 H 0.04 2.05 8.13 -2.38 -0.02 2.03 16 23 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 24 H 0.05 1.91 7.45 -2.39 -0.02 1.90 16 25 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 26 H 0.33 13.69 7.76 -89.70 -0.70 13.00 16 27 H 0.09 2.78 7.92 -2.38 -0.02 2.76 16 28 H 0.02 0.82 6.77 -2.39 -0.02 0.81 16 29 H 0.14 2.55 8.04 -2.91 -0.02 2.53 16 30 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -71.42 275.06 3.26 -68.16 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.36 Total: 12.06 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 3.68 Total: -21.19 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -2.45 Total: -106.54 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.50 kcal Total: -71.42 3.26 -68.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134970804.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.366 kcal (2) G-P(sol) polarization free energy of solvation -71.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds