Wall clock time and date at job start Sun Mar 29 2020 21:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47615 * 2 1 4 4 C 1.50695 * 109.47285 * 239.99454 * 2 1 3 5 5 H 1.08004 * 120.00700 * 240.00048 * 4 2 1 6 6 C 1.37879 * 119.99964 * 60.00188 * 4 2 1 7 7 N 1.31514 * 119.99827 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47319 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46578 * 120.00445 * 8 6 4 11 11 H 1.48501 * 109.47089 * 240.00124 * 8 6 4 12 12 N 1.46903 * 109.46877 * 119.99556 * 2 1 3 13 13 C 1.46899 * 111.00125 * 274.99795 * 12 2 1 14 14 C 1.50700 * 109.47136 * 179.97438 * 13 12 2 15 15 C 1.37972 * 120.07925 * 259.95895 * 14 13 12 16 16 C 1.38340 * 120.14948 * 180.02562 * 15 14 13 17 17 C 1.38385 * 120.30600 * 0.02562 * 16 15 14 18 18 C 1.37924 * 120.14965 * 0.02562 * 17 16 15 19 19 C 1.39617 * 120.07542 * 80.00272 * 14 13 12 20 20 C 1.43204 * 120.14815 * 359.95497 * 19 14 13 21 21 N 4.52638 * 154.56456 * 87.64129 * 2 1 3 22 22 H 1.09003 * 109.47611 * 300.00607 * 1 2 3 23 23 H 1.09008 * 109.47173 * 60.00373 * 1 2 3 24 24 H 1.08995 * 109.47615 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99885 * 179.97438 * 7 6 4 26 26 H 1.00898 * 110.99929 * 38.95497 * 12 2 1 27 27 H 1.09001 * 109.46606 * 60.00490 * 13 12 2 28 28 H 1.08992 * 109.47210 * 300.00480 * 13 12 2 29 29 H 1.08004 * 119.92250 * 0.04741 * 15 14 13 30 30 H 1.07996 * 119.84478 * 180.27649 * 16 15 14 31 31 H 1.07999 * 119.92033 * 179.97438 * 17 16 15 32 32 H 1.08010 * 120.07147 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 3.1474 -2.2866 -3.6036 10 1 1.1679 -1.5868 -4.8163 11 1 3.1474 -0.1861 -4.8159 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5872 -0.5216 3.5561 15 6 1.6992 -0.9727 4.5109 16 6 2.1611 -1.6557 5.6218 17 6 3.5151 -1.8909 5.7839 18 6 4.4139 -1.4446 4.8376 19 6 3.9546 -0.7555 3.7132 20 6 4.8820 -0.2902 2.7262 21 7 5.6176 0.0800 1.9424 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 0.7096 1.1616 -3.4845 26 1 1.4494 -1.4978 1.4101 27 1 1.0869 0.6164 2.5525 28 1 2.7587 1.0463 2.1182 29 1 0.6412 -0.7925 4.3906 30 1 1.4613 -2.0105 6.3639 31 1 3.8689 -2.4244 6.6537 32 1 5.4705 -1.6285 4.9656 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134970823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:34 Heat of formation + Delta-G solvation = 50.337565 kcal Electronic energy + Delta-G solvation = -15066.300842 eV Core-core repulsion = 12605.652872 eV Total energy + Delta-G solvation = -2460.647970 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.56181 -36.07471 -35.91675 -33.02469 -31.25687 -31.17267 -28.17443 -25.22804 -24.61448 -23.50910 -21.34048 -20.22285 -18.56132 -16.52949 -15.70042 -15.63569 -14.81185 -14.46148 -14.24504 -13.77478 -13.31819 -12.95370 -12.93404 -12.53383 -12.33649 -12.14116 -11.78870 -11.65925 -11.23703 -11.08056 -10.88316 -10.72047 -10.45268 -10.15276 -9.90272 -9.03060 -8.94484 -8.72886 -8.35208 -7.30117 -5.97404 -4.00114 0.88859 1.31337 3.12011 3.20996 3.33627 3.41198 3.47420 4.02760 4.21546 4.46813 4.80070 4.83228 4.92871 5.26019 5.34697 5.39444 5.54187 5.72769 5.80599 5.95834 6.17497 6.25500 6.37533 6.55380 6.65966 6.80593 6.82519 7.05765 7.31616 7.72227 7.88140 7.93058 8.24949 8.49294 8.58158 9.06917 9.65122 11.09821 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033845 B = 0.006386 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.103991 B = 4383.741425 C = 4842.511270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.676 5.676 13 C 0.086 3.914 14 C -0.023 4.023 15 C -0.118 4.118 16 C -0.095 4.095 17 C -0.130 4.130 18 C -0.077 4.077 19 C -0.005 4.005 20 C 0.255 3.745 21 N -0.407 5.407 22 H 0.005 0.995 23 H 0.090 0.910 24 H 0.029 0.971 25 H 0.259 0.741 26 H 0.328 0.672 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -4.170 17.273 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.306 5.306 13 C -0.043 4.043 14 C -0.027 4.027 15 C -0.137 4.137 16 C -0.114 4.114 17 C -0.148 4.148 18 C -0.097 4.097 19 C -0.009 4.009 20 C -0.060 4.060 21 N -0.082 5.082 22 H 0.024 0.976 23 H 0.108 0.892 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.055 0.945 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.362 -3.381 15.716 16.249 hybrid contribution -1.072 -0.456 -0.420 1.238 sum 1.291 -3.837 15.296 15.823 Atomic orbital electron populations 1.22431 1.00522 0.99277 1.00562 1.19195 0.89673 0.94424 0.86231 0.94911 1.21160 1.30016 1.12409 0.89495 0.91948 1.24939 0.95332 0.95217 0.99047 1.69888 1.37478 1.23203 1.23237 0.86451 0.78495 0.79706 0.82840 1.19751 1.21169 1.21120 1.60895 1.58375 1.08735 1.02560 1.21000 0.99150 0.95393 0.88759 1.20186 0.91395 0.95494 0.95583 1.21053 0.99750 0.98905 0.93970 1.21307 0.95720 0.97077 0.97300 1.20999 0.93187 1.01191 0.99414 1.21143 1.00201 0.95977 0.92418 1.15896 0.90174 1.02446 0.92399 1.25469 0.93190 0.94190 0.93189 1.81242 1.10816 1.08054 1.08106 0.97587 0.89183 0.95220 0.93133 0.85530 0.94489 0.90809 0.85265 0.85630 0.85416 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.94 37.15 0.33 -3.66 16 2 C 0.21 5.36 2.57 -68.87 -0.18 5.19 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.52 16 4 C -0.49 -13.95 8.84 -34.44 -0.30 -14.25 16 5 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 6 C 0.05 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -26.12 11.32 55.43 0.63 -25.50 16 8 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 12 N -0.68 -14.24 6.22 -109.23 -0.68 -14.92 16 13 C 0.09 1.51 5.04 -4.98 -0.03 1.48 16 14 C -0.02 -0.33 5.43 -104.20 -0.57 -0.90 16 15 C -0.12 -1.32 9.66 -39.64 -0.38 -1.71 16 16 C -0.10 -0.86 10.04 -39.49 -0.40 -1.26 16 17 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 18 C -0.08 -0.83 9.76 -39.17 -0.38 -1.21 16 19 C -0.01 -0.08 5.73 -106.93 -0.61 -0.69 16 20 C 0.26 4.47 14.00 -22.44 -0.31 4.15 16 21 N -0.41 -8.23 18.54 41.87 0.78 -7.45 16 22 H 0.01 0.11 7.45 -51.93 -0.39 -0.28 16 23 H 0.09 2.39 6.07 -51.92 -0.32 2.08 16 24 H 0.03 0.67 8.13 -51.93 -0.42 0.24 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.33 6.48 8.46 -39.29 -0.33 6.14 16 27 H 0.04 0.61 7.30 -51.93 -0.38 0.23 16 28 H 0.07 1.41 7.39 -51.93 -0.38 1.03 16 29 H 0.13 1.27 8.03 -52.48 -0.42 0.85 16 30 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 283.21 15.07 4.27 4.27 Total: -1.00 -31.17 283.21 -7.21 -38.38 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -3.86 Total: 1.00 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -3.32 Total: -12.93 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.72 Total: -47.87 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.17 -7.21 -38.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134970823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.717 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds