Wall clock time and date at job start Sun Mar 29 2020 21:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47615 * 2 1 4 4 C 1.50695 * 109.47285 * 239.99454 * 2 1 3 5 5 H 1.08004 * 120.00700 * 240.00048 * 4 2 1 6 6 C 1.37879 * 119.99964 * 60.00188 * 4 2 1 7 7 N 1.31514 * 119.99827 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99893 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47319 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46578 * 120.00445 * 8 6 4 11 11 H 1.48501 * 109.47089 * 240.00124 * 8 6 4 12 12 N 1.46903 * 109.46877 * 119.99556 * 2 1 3 13 13 C 1.46899 * 111.00125 * 274.99795 * 12 2 1 14 14 C 1.50700 * 109.47136 * 179.97438 * 13 12 2 15 15 C 1.37972 * 120.07925 * 259.95895 * 14 13 12 16 16 C 1.38340 * 120.14948 * 180.02562 * 15 14 13 17 17 C 1.38385 * 120.30600 * 0.02562 * 16 15 14 18 18 C 1.37924 * 120.14965 * 0.02562 * 17 16 15 19 19 C 1.39617 * 120.07542 * 80.00272 * 14 13 12 20 20 C 1.43204 * 120.14815 * 359.95497 * 19 14 13 21 21 N 4.52638 * 154.56456 * 87.64129 * 2 1 3 22 22 H 1.09003 * 109.47611 * 300.00607 * 1 2 3 23 23 H 1.09008 * 109.47173 * 60.00373 * 1 2 3 24 24 H 1.08995 * 109.47615 * 180.02562 * 1 2 3 25 25 H 0.97001 * 119.99885 * 179.97438 * 7 6 4 26 26 H 1.00898 * 110.99929 * 38.95497 * 12 2 1 27 27 H 1.09001 * 109.46606 * 60.00490 * 13 12 2 28 28 H 1.08992 * 109.47210 * 300.00480 * 13 12 2 29 29 H 1.08004 * 119.92250 * 0.04741 * 15 14 13 30 30 H 1.07996 * 119.84478 * 180.27649 * 16 15 14 31 31 H 1.07999 * 119.92033 * 179.97438 * 17 16 15 32 32 H 1.08010 * 120.07147 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3226 -1.1199 -4.0078 9 1 3.1474 -2.2866 -3.6036 10 1 1.1679 -1.5868 -4.8163 11 1 3.1474 -0.1861 -4.8159 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5872 -0.5216 3.5561 15 6 1.6992 -0.9727 4.5109 16 6 2.1611 -1.6557 5.6218 17 6 3.5151 -1.8909 5.7839 18 6 4.4139 -1.4446 4.8376 19 6 3.9546 -0.7555 3.7132 20 6 4.8820 -0.2902 2.7262 21 7 5.6176 0.0800 1.9424 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 0.7096 1.1616 -3.4845 26 1 1.4494 -1.4978 1.4101 27 1 1.0869 0.6164 2.5525 28 1 2.7587 1.0463 2.1182 29 1 0.6412 -0.7925 4.3906 30 1 1.4613 -2.0105 6.3639 31 1 3.8689 -2.4244 6.6537 32 1 5.4705 -1.6285 4.9656 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134970823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:34 Heat of formation + Delta-G solvation = 30.172812 kcal Electronic energy + Delta-G solvation = -15067.175251 eV Core-core repulsion = 12605.652872 eV Total energy + Delta-G solvation = -2461.522380 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54263 -37.75854 -37.31298 -34.82293 -32.71244 -32.13577 -29.79774 -27.28773 -26.04904 -24.47338 -22.46354 -22.14584 -19.61196 -18.45350 -16.98381 -16.75755 -16.58489 -15.82548 -15.50493 -15.11075 -14.83115 -14.66253 -14.03509 -13.88100 -13.72501 -13.63944 -13.44832 -13.04383 -12.91335 -12.74547 -12.54784 -12.21947 -12.12861 -12.01419 -11.72413 -11.08245 -10.53245 -9.82188 -9.70672 -9.00934 -8.14339 -6.25103 -0.07186 0.46348 1.36244 1.38293 1.50618 1.78612 2.10660 2.39737 2.96339 3.07206 3.13822 3.65951 3.83006 4.04792 4.26388 4.40401 4.55095 4.64944 4.68882 4.73971 4.87774 4.90884 5.04948 5.13309 5.36725 5.46203 5.57909 5.59783 5.66607 5.78645 6.02129 6.23343 6.58229 6.61476 6.78512 6.90443 7.44657 8.91211 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033845 B = 0.006386 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.103991 B = 4383.741425 C = 4842.511270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.218 3.782 3 H -0.007 1.007 4 C -0.514 4.514 5 H 0.048 0.952 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.284 1.284 12 N -0.682 5.682 13 C 0.092 3.908 14 C -0.042 4.042 15 C -0.118 4.118 16 C -0.078 4.078 17 C -0.115 4.115 18 C -0.071 4.071 19 C -0.037 4.037 20 C 0.275 3.725 21 N -0.476 5.476 22 H 0.031 0.969 23 H 0.060 0.940 24 H 0.037 0.963 25 H 0.261 0.739 26 H 0.337 0.663 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.144 0.856 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -6.094 19.934 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.110 3.890 3 H 0.011 0.989 4 C -0.553 4.553 5 H 0.066 0.934 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.313 5.313 13 C -0.037 4.037 14 C -0.045 4.045 15 C -0.137 4.137 16 C -0.096 4.096 17 C -0.133 4.133 18 C -0.091 4.091 19 C -0.041 4.041 20 C -0.039 4.039 21 N -0.152 5.152 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.155 0.845 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.162 0.838 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.532 -5.312 18.398 19.210 hybrid contribution -0.841 0.116 -1.072 1.368 sum 0.690 -5.195 17.326 18.101 Atomic orbital electron populations 1.22199 0.99128 0.99631 1.00338 1.18906 0.90591 0.92188 0.87357 0.98917 1.21439 1.30224 1.12321 0.91267 0.93362 1.25691 0.95496 0.95924 1.01807 1.70006 1.38068 1.24116 1.23941 0.85510 0.78230 0.78500 0.79405 1.19756 1.19788 1.20993 1.60670 1.58348 1.09462 1.02810 1.20881 0.99214 0.94558 0.89029 1.19904 0.91936 0.97294 0.95343 1.21247 0.99960 0.98611 0.93836 1.21778 0.96611 0.94678 0.96575 1.21494 0.92740 0.99525 0.99495 1.21422 1.01786 0.94651 0.91276 1.16130 0.89597 1.05024 0.93351 1.26223 0.92471 0.92563 0.92631 1.81228 1.13061 1.10694 1.10243 0.94969 0.92119 0.94402 0.92944 0.84489 0.93331 0.93797 0.83817 0.81733 0.81401 0.83553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.33 8.94 71.98 0.64 -6.69 16 2 C 0.22 11.40 2.57 44.16 0.11 11.51 16 3 H -0.01 -0.42 7.80 -2.39 -0.02 -0.44 16 4 C -0.51 -29.99 8.84 25.60 0.23 -29.76 16 5 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 6 C 0.01 0.52 5.30 84.66 0.45 0.97 16 7 N -0.92 -54.76 11.32 21.45 0.24 -54.52 16 8 Si 0.96 46.15 29.54 68.60 2.03 48.18 16 9 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 N -0.68 -29.40 6.22 -499.49 -3.11 -32.50 16 13 C 0.09 3.29 5.04 85.56 0.43 3.72 16 14 C -0.04 -1.14 5.43 -19.59 -0.11 -1.25 16 15 C -0.12 -2.24 9.66 22.23 0.21 -2.03 16 16 C -0.08 -0.98 10.04 22.33 0.22 -0.76 16 17 C -0.11 -1.41 10.03 22.23 0.22 -1.19 16 18 C -0.07 -1.31 9.76 22.53 0.22 -1.09 16 19 C -0.04 -1.03 5.73 -21.36 -0.12 -1.15 16 20 C 0.28 10.01 14.00 88.32 1.24 11.24 16 21 N -0.48 -20.40 18.54 19.02 0.35 -20.05 16 22 H 0.03 1.32 7.45 -2.39 -0.02 1.30 16 23 H 0.06 3.27 6.07 -2.38 -0.01 3.26 16 24 H 0.04 1.69 8.13 -2.39 -0.02 1.68 16 25 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 26 H 0.34 13.26 8.46 -89.70 -0.76 12.50 16 27 H 0.05 1.59 7.30 -2.39 -0.02 1.57 16 28 H 0.04 1.79 7.39 -2.39 -0.02 1.78 16 29 H 0.14 2.29 8.03 -2.91 -0.02 2.27 16 30 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 32 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -71.43 283.21 3.64 -67.79 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.37 Total: 7.56 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 3.75 Total: -16.46 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -2.51 Total: -107.07 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -71.43 3.64 -67.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134970823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.967 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds