Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37969 * 119.92648 * 2 1 4 4 C 1.39612 * 119.84543 * 180.23727 * 3 2 1 5 5 C 1.43206 * 120.14730 * 179.74161 * 4 3 2 6 6 N 4.80129 * 134.70280 * 359.74610 * 2 1 3 7 7 C 1.39651 * 119.70135 * 359.45924 * 4 3 2 8 8 C 1.37930 * 119.84144 * 0.27919 * 7 4 3 9 9 C 1.38338 * 119.92471 * 179.71626 * 2 1 3 10 10 C 1.50707 * 119.84842 * 0.02562 * 9 2 1 11 11 N 1.46501 * 109.46760 * 278.79279 * 10 9 2 12 12 C 1.46496 * 119.99977 * 275.31035 * 11 10 9 13 13 C 1.36944 * 119.99903 * 95.31417 * 11 10 9 14 14 H 1.07999 * 119.99798 * 24.15217 * 13 11 10 15 15 C 1.38811 * 120.00016 * 204.15447 * 13 11 10 16 16 N 1.31625 * 119.99949 * 13.66904 * 15 13 11 17 17 Si 1.86802 * 119.99896 * 193.67876 * 15 13 11 18 18 H 1.48497 * 109.47174 * 59.99726 * 17 15 13 19 19 H 1.48496 * 109.46845 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46696 * 299.99441 * 17 15 13 21 21 H 1.08999 * 109.47043 * 265.09289 * 1 2 3 22 22 H 1.08999 * 109.46938 * 25.09121 * 1 2 3 23 23 H 1.09000 * 109.47179 * 145.09132 * 1 2 3 24 24 H 1.08005 * 120.07500 * 359.97179 * 3 2 1 25 25 H 1.07995 * 120.07715 * 180.30581 * 7 4 3 26 26 H 1.08009 * 119.92001 * 180.02562 * 8 7 4 27 27 H 1.09003 * 109.46666 * 38.78784 * 10 9 2 28 28 H 1.08989 * 109.47453 * 158.79368 * 10 9 2 29 29 H 1.09002 * 109.46887 * 94.74775 * 12 11 10 30 30 H 1.09004 * 109.46809 * 214.74399 * 12 11 10 31 31 H 1.08994 * 109.47423 * 334.74652 * 12 11 10 32 32 H 0.96996 * 119.99677 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1957 0.0000 4 6 3.5914 1.1938 -0.0050 5 6 4.3124 2.4311 -0.0106 6 7 4.8844 3.4126 -0.0151 7 6 4.2817 -0.0202 0.0014 8 6 3.5809 -1.2082 0.0069 9 6 2.1971 -1.1989 0.0059 10 6 1.4384 -2.5011 0.0118 11 7 1.0097 -2.8102 1.3781 12 6 1.9244 -3.4935 2.2960 13 6 -0.2463 -2.4605 1.7973 14 1 -1.0387 -2.3273 1.0757 15 6 -0.5008 -2.2773 3.1495 16 7 0.4991 -2.1721 3.9990 17 14 -2.2623 -2.1802 3.7636 18 1 -2.9721 -3.4418 3.4327 19 1 -2.2632 -1.9837 5.2355 20 1 -2.9517 -1.0383 3.1109 21 1 -0.3633 -0.0879 1.0239 22 1 -0.3633 0.9307 -0.4358 23 1 -0.3633 -0.8427 -0.5881 24 1 1.6553 2.1311 -0.0005 25 1 5.3616 -0.0288 0.0026 26 1 4.1134 -2.1478 0.0123 27 1 0.5636 -2.4147 -0.6328 28 1 2.0834 -3.2990 -0.3559 29 1 2.4500 -2.7552 2.9017 30 1 1.3567 -4.1591 2.9461 31 1 2.6472 -4.0744 1.7232 32 1 0.3213 -2.0444 4.9439 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165423823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = 70.256794 kcal Electronic energy + Delta-G solvation = -15519.438342 eV Core-core repulsion = 13059.654135 eV Total energy + Delta-G solvation = -2459.784208 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.29498 -36.50176 -35.37501 -32.50090 -31.88305 -30.35670 -26.89139 -26.42773 -25.45961 -22.63963 -21.55458 -20.47211 -17.83968 -16.83680 -15.41953 -15.33456 -14.73753 -13.99838 -13.91487 -13.57986 -13.24798 -12.93846 -12.76054 -12.64455 -12.45641 -12.04483 -11.64327 -11.40429 -11.27558 -10.86957 -10.79477 -10.65727 -10.58361 -10.32927 -10.01880 -9.96422 -8.63504 -8.42479 -8.09186 -6.85825 -5.83181 -3.27437 1.21176 1.81698 2.89569 3.27054 3.32444 3.39075 3.39693 4.19970 4.26821 4.44247 5.21336 5.24116 5.30738 5.54762 5.58384 5.74035 5.79294 6.01497 6.11764 6.26295 6.31807 6.45518 6.60308 6.67293 6.67600 6.78914 6.94109 7.24018 7.25992 7.36986 7.65458 7.70417 7.72677 8.28392 9.10806 9.73240 10.23191 11.20261 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.007685 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.544335 B = 3642.764811 C = 3918.511581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.062 4.062 3 C -0.076 4.076 4 C -0.059 4.059 5 C 0.271 3.729 6 N -0.449 5.449 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.051 4.051 10 C 0.172 3.828 11 N -0.585 5.585 12 C 0.159 3.841 13 C -0.253 4.253 14 H 0.072 0.928 15 C 0.006 3.994 16 N -0.897 5.897 17 Si 0.901 3.099 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.281 1.281 21 H 0.095 0.905 22 H 0.047 0.953 23 H 0.068 0.932 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.123 0.877 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.001 0.999 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 0.242 -7.825 8.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.063 4.063 3 C -0.097 4.097 4 C -0.063 4.063 5 C -0.043 4.043 6 N -0.125 5.125 7 C -0.100 4.100 8 C -0.139 4.139 9 C -0.056 4.056 10 C 0.046 3.954 11 N -0.305 5.305 12 C 0.015 3.985 13 C -0.383 4.383 14 H 0.090 0.910 15 C -0.194 4.194 16 N -0.540 5.540 17 Si 0.730 3.270 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.207 1.207 21 H 0.113 0.887 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.129 1.720 -7.593 8.391 hybrid contribution -0.962 -0.082 0.733 1.212 sum 2.167 1.638 -6.860 7.378 Atomic orbital electron populations 1.20941 0.90501 1.00799 1.04559 1.19647 0.96710 0.91644 0.98250 1.20937 0.91591 0.98284 0.98841 1.15831 0.92245 0.86611 1.11658 1.25921 0.92894 0.92873 0.92655 1.81173 1.09338 1.11199 1.10799 1.20952 0.99213 0.91029 0.98762 1.20881 0.93904 0.97256 1.01880 1.21347 0.93785 0.97927 0.92558 1.20126 0.96223 0.89969 0.89120 1.44130 1.13114 1.64346 1.08886 1.20837 0.91499 0.94680 0.91488 1.19173 0.85464 1.42326 0.91334 0.91035 1.25096 0.97160 1.00046 0.97108 1.70048 1.29320 1.52025 1.02627 0.86404 0.84576 0.78187 0.77816 1.20937 1.21644 1.20711 0.88650 0.93446 0.91300 0.86073 0.86145 0.85863 0.91840 0.93450 0.94927 0.93889 0.98072 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 8.30 36.01 0.30 -1.56 16 2 C -0.06 -1.05 5.87 -104.68 -0.61 -1.67 16 3 C -0.08 -1.20 9.38 -39.17 -0.37 -1.57 16 4 C -0.06 -0.92 5.73 -106.93 -0.61 -1.53 16 5 C 0.27 4.32 15.33 -22.47 -0.34 3.97 16 6 N -0.45 -7.79 18.54 41.84 0.78 -7.01 16 7 C -0.08 -1.15 9.76 -39.17 -0.38 -1.53 16 8 C -0.12 -1.86 9.65 -39.64 -0.38 -2.24 16 9 C -0.05 -0.89 5.46 -104.53 -0.57 -1.46 16 10 C 0.17 3.14 5.37 -5.19 -0.03 3.11 16 11 N -0.58 -13.19 2.90 -182.50 -0.53 -13.72 16 12 C 0.16 3.63 9.03 59.84 0.54 4.17 16 13 C -0.25 -6.18 7.28 -15.06 -0.11 -6.29 16 14 H 0.07 1.68 7.39 -52.49 -0.39 1.29 16 15 C 0.01 0.15 5.08 -17.43 -0.09 0.06 16 16 N -0.90 -24.63 10.82 55.49 0.60 -24.03 16 17 Si 0.90 20.44 29.58 -169.99 -5.03 15.41 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H 0.10 1.89 6.80 -51.93 -0.35 1.54 16 22 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 23 H 0.07 1.10 6.09 -51.93 -0.32 0.78 16 24 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 25 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 26 H 0.12 1.68 8.04 -52.48 -0.42 1.26 16 27 H 0.06 1.10 6.22 -51.93 -0.32 0.78 16 28 H 0.05 0.77 7.81 -51.94 -0.41 0.37 16 29 H 0.03 0.82 7.33 -51.93 -0.38 0.44 16 30 H 0.04 1.05 7.41 -51.93 -0.38 0.67 16 31 H 0.00 0.01 7.89 -51.93 -0.41 -0.40 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 276.87 15.07 4.17 4.17 Total: -1.00 -27.60 276.87 -6.45 -34.06 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -3.78 Total: -2.36 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.66 Total: -6.53 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.85 Total: -44.76 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.60 -6.45 -34.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165423823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.312 kcal (2) G-P(sol) polarization free energy of solvation -27.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds