Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37969 * 119.92648 * 2 1 4 4 C 1.39612 * 119.84543 * 180.23727 * 3 2 1 5 5 C 1.43206 * 120.14730 * 179.74161 * 4 3 2 6 6 N 4.80129 * 134.70280 * 359.74610 * 2 1 3 7 7 C 1.39651 * 119.70135 * 359.45924 * 4 3 2 8 8 C 1.37930 * 119.84144 * 0.27919 * 7 4 3 9 9 C 1.38338 * 119.92471 * 179.71626 * 2 1 3 10 10 C 1.50707 * 119.84842 * 0.02562 * 9 2 1 11 11 N 1.46501 * 109.46760 * 278.79279 * 10 9 2 12 12 C 1.46496 * 119.99977 * 275.31035 * 11 10 9 13 13 C 1.36944 * 119.99903 * 95.31417 * 11 10 9 14 14 H 1.07999 * 119.99798 * 24.15217 * 13 11 10 15 15 C 1.38811 * 120.00016 * 204.15447 * 13 11 10 16 16 N 1.31625 * 119.99949 * 13.66904 * 15 13 11 17 17 Si 1.86802 * 119.99896 * 193.67876 * 15 13 11 18 18 H 1.48497 * 109.47174 * 59.99726 * 17 15 13 19 19 H 1.48496 * 109.46845 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46696 * 299.99441 * 17 15 13 21 21 H 1.08999 * 109.47043 * 265.09289 * 1 2 3 22 22 H 1.08999 * 109.46938 * 25.09121 * 1 2 3 23 23 H 1.09000 * 109.47179 * 145.09132 * 1 2 3 24 24 H 1.08005 * 120.07500 * 359.97179 * 3 2 1 25 25 H 1.07995 * 120.07715 * 180.30581 * 7 4 3 26 26 H 1.08009 * 119.92001 * 180.02562 * 8 7 4 27 27 H 1.09003 * 109.46666 * 38.78784 * 10 9 2 28 28 H 1.08989 * 109.47453 * 158.79368 * 10 9 2 29 29 H 1.09002 * 109.46887 * 94.74775 * 12 11 10 30 30 H 1.09004 * 109.46809 * 214.74399 * 12 11 10 31 31 H 1.08994 * 109.47423 * 334.74652 * 12 11 10 32 32 H 0.96996 * 119.99677 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1957 0.0000 4 6 3.5914 1.1938 -0.0050 5 6 4.3124 2.4311 -0.0106 6 7 4.8844 3.4126 -0.0151 7 6 4.2817 -0.0202 0.0014 8 6 3.5809 -1.2082 0.0069 9 6 2.1971 -1.1989 0.0059 10 6 1.4384 -2.5011 0.0118 11 7 1.0097 -2.8102 1.3781 12 6 1.9244 -3.4935 2.2960 13 6 -0.2463 -2.4605 1.7973 14 1 -1.0387 -2.3273 1.0757 15 6 -0.5008 -2.2773 3.1495 16 7 0.4991 -2.1721 3.9990 17 14 -2.2623 -2.1802 3.7636 18 1 -2.9721 -3.4418 3.4327 19 1 -2.2632 -1.9837 5.2355 20 1 -2.9517 -1.0383 3.1109 21 1 -0.3633 -0.0879 1.0239 22 1 -0.3633 0.9307 -0.4358 23 1 -0.3633 -0.8427 -0.5881 24 1 1.6553 2.1311 -0.0005 25 1 5.3616 -0.0288 0.0026 26 1 4.1134 -2.1478 0.0123 27 1 0.5636 -2.4147 -0.6328 28 1 2.0834 -3.2990 -0.3559 29 1 2.4500 -2.7552 2.9017 30 1 1.3567 -4.1591 2.9461 31 1 2.6472 -4.0744 1.7232 32 1 0.3213 -2.0444 4.9439 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165423823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = 56.487341 kcal Electronic energy + Delta-G solvation = -15520.035431 eV Core-core repulsion = 13059.654135 eV Total energy + Delta-G solvation = -2460.381296 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.58240 -37.91366 -36.95858 -33.95705 -33.33961 -31.91984 -28.29319 -28.08128 -27.04756 -24.18867 -22.85583 -21.97917 -19.12529 -18.62492 -16.97642 -16.66179 -16.28508 -15.61003 -15.16179 -15.05970 -14.86230 -14.41852 -14.06483 -13.97698 -13.85765 -13.56860 -13.09330 -12.95668 -12.78878 -12.51768 -12.46464 -12.15308 -12.08893 -11.87594 -11.81715 -11.53953 -10.52259 -9.67408 -9.40481 -8.68548 -7.73612 -5.19685 -0.05738 0.58053 1.51529 1.53966 1.58557 1.61269 1.99511 2.58004 2.91611 3.02062 3.42557 3.92948 4.02803 4.07314 4.23772 4.46635 4.49249 4.78522 4.84716 4.92754 4.95289 5.05765 5.17460 5.23073 5.37754 5.44004 5.50355 5.59955 5.75763 5.81462 5.94282 6.09749 6.41842 6.45093 7.23483 7.94663 8.39196 9.28866 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.007685 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.544335 B = 3642.764811 C = 3918.511581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.079 4.079 3 C -0.078 4.078 4 C -0.058 4.058 5 C 0.287 3.713 6 N -0.471 5.471 7 C -0.072 4.072 8 C -0.119 4.119 9 C -0.067 4.067 10 C 0.172 3.828 11 N -0.601 5.601 12 C 0.174 3.826 13 C -0.239 4.239 14 H 0.079 0.921 15 C -0.049 4.049 16 N -0.935 5.935 17 Si 0.951 3.049 18 H -0.281 1.281 19 H -0.305 1.305 20 H -0.273 1.273 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.136 0.864 25 H 0.149 0.851 26 H 0.145 0.855 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.002 0.998 30 H 0.013 0.987 31 H 0.036 0.964 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 0.396 -9.561 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.080 4.080 3 C -0.099 4.099 4 C -0.062 4.062 5 C -0.026 4.026 6 N -0.148 5.148 7 C -0.093 4.093 8 C -0.137 4.137 9 C -0.071 4.071 10 C 0.046 3.954 11 N -0.323 5.323 12 C 0.029 3.971 13 C -0.369 4.369 14 H 0.097 0.903 15 C -0.244 4.244 16 N -0.581 5.581 17 Si 0.780 3.220 18 H -0.207 1.207 19 H -0.232 1.232 20 H -0.199 1.199 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.154 0.846 25 H 0.167 0.833 26 H 0.163 0.837 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.021 0.979 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.738 1.890 -9.389 10.281 hybrid contribution -1.051 -0.098 1.091 1.518 sum 2.688 1.793 -8.298 8.905 Atomic orbital electron populations 1.20827 0.90495 1.02343 1.02518 1.19805 0.96999 0.92199 0.98970 1.21111 0.91938 0.98579 0.98227 1.15939 0.92176 0.86785 1.11271 1.25876 0.92293 0.92563 0.91916 1.81202 1.10166 1.11853 1.11563 1.21262 1.00701 0.90200 0.97121 1.21146 0.93250 0.98605 1.00742 1.21320 0.94745 0.97392 0.93647 1.20227 0.97213 0.91247 0.86680 1.44235 1.12879 1.65140 1.10001 1.20557 0.91442 0.93651 0.91443 1.19435 0.86751 1.39523 0.91200 0.90344 1.25662 0.99628 1.01458 0.97697 1.70211 1.30621 1.55265 1.02050 0.85583 0.81666 0.78302 0.76401 1.20678 1.23156 1.19851 0.92149 0.90968 0.91017 0.84583 0.83333 0.83713 0.91127 0.91081 0.97943 0.96821 0.94570 0.94751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.36 8.30 71.24 0.59 -2.77 16 2 C -0.08 -2.56 5.87 -19.90 -0.12 -2.68 16 3 C -0.08 -2.29 9.38 22.54 0.21 -2.08 16 4 C -0.06 -1.63 5.73 -21.36 -0.12 -1.75 16 5 C 0.29 8.47 15.33 88.33 1.35 9.82 16 6 N -0.47 -15.42 18.54 19.01 0.35 -15.06 16 7 C -0.07 -1.86 9.76 22.54 0.22 -1.64 16 8 C -0.12 -3.29 9.65 22.23 0.21 -3.08 16 9 C -0.07 -2.17 5.46 -19.80 -0.11 -2.28 16 10 C 0.17 5.86 5.37 85.63 0.46 6.32 16 11 N -0.60 -26.57 2.90 -731.31 -2.12 -28.70 16 12 C 0.17 7.87 9.03 127.77 1.15 9.02 16 13 C -0.24 -11.58 7.28 84.03 0.61 -10.97 16 14 H 0.08 3.62 7.39 -2.91 -0.02 3.60 16 15 C -0.05 -2.57 5.08 84.86 0.43 -2.14 16 16 N -0.93 -52.85 10.82 21.65 0.23 -52.62 16 17 Si 0.95 42.68 29.58 68.60 2.03 44.71 16 18 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H 0.06 2.38 6.80 -2.39 -0.02 2.36 16 22 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 23 H 0.07 2.18 6.09 -2.39 -0.01 2.17 16 24 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 25 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 26 H 0.15 3.37 8.04 -2.91 -0.02 3.34 16 27 H 0.07 2.29 6.22 -2.39 -0.01 2.28 16 28 H 0.07 2.08 7.81 -2.39 -0.02 2.06 16 29 H 0.00 0.11 7.33 -2.39 -0.02 0.10 16 30 H 0.01 0.66 7.41 -2.39 -0.02 0.64 16 31 H 0.04 1.34 7.89 -2.39 -0.02 1.32 16 32 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -59.39 276.87 6.51 -52.88 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.12 Total: 3.01 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 4.90 Total: -4.22 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -1.54 Total: -96.38 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -59.39 6.51 -52.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165423823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.367 kcal (2) G-P(sol) polarization free energy of solvation -59.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds