Wall clock time and date at job start Sun Mar 29 2020 21:35:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86796 * 119.99554 * 2 1
4 4 H 1.48501 * 109.47162 * 269.99766 * 3 2 1
5 5 H 1.48491 * 109.47263 * 30.00261 * 3 2 1
6 6 H 1.48511 * 109.46699 * 150.00088 * 3 2 1
7 7 C 1.37881 * 120.00028 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99932 * 0.02562 * 7 2 1
9 9 C 1.50698 * 119.99649 * 179.97438 * 7 2 1
10 10 N 1.46902 * 109.46953 * 180.02562 * 9 7 2
11 11 C 1.46903 * 111.00098 * 180.02562 * 10 9 7
12 12 C 1.53001 * 109.47003 * 179.97438 * 11 10 9
13 13 N 1.46899 * 109.46645 * 179.97438 * 12 11 10
14 14 C 1.46466 * 111.00008 * 295.97805 * 13 12 11
15 15 C 1.53257 * 109.85942 * 162.23634 * 14 13 12
16 16 S 1.81896 * 108.50319 * 62.00524 * 15 14 13
17 17 C 1.81900 * 101.91729 * 308.69742 * 16 15 14
18 18 C 1.46476 * 110.99642 * 170.00420 * 13 12 11
19 19 H 0.96994 * 120.00775 * 359.97438 * 1 2 3
20 20 H 1.09005 * 109.46885 * 60.00617 * 9 7 2
21 21 H 1.08999 * 109.47671 * 300.00066 * 9 7 2
22 22 H 1.00905 * 111.00073 * 303.95697 * 10 9 7
23 23 H 1.09003 * 109.46796 * 59.99975 * 11 10 9
24 24 H 1.08992 * 109.46903 * 300.00077 * 11 10 9
25 25 H 1.09001 * 109.46715 * 60.00440 * 12 11 10
26 26 H 1.09001 * 109.47246 * 299.99908 * 12 11 10
27 27 H 1.08996 * 109.41064 * 282.35718 * 14 13 12
28 28 H 1.09003 * 109.40451 * 42.12084 * 14 13 12
29 29 H 1.09000 * 109.62812 * 302.30722 * 15 14 13
30 30 H 1.08992 * 109.79327 * 181.80970 * 15 14 13
31 31 H 1.09006 * 109.63072 * 291.60294 * 17 16 15
32 32 H 1.08997 * 109.79606 * 171.10985 * 17 16 15
33 33 H 1.09003 * 109.40150 * 317.88083 * 18 13 12
34 34 H 1.09001 * 109.40888 * 77.72481 * 18 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6178 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6526 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1941 0.0005
8 1 1.4646 -2.1294 0.0005
9 6 3.5115 -1.1940 0.0000
10 7 4.0013 -2.5790 0.0001
11 6 5.4698 -2.6181 0.0001
12 6 5.9411 -4.0737 0.0009
13 7 7.4096 -4.1128 0.0003
14 6 7.9497 -3.5288 -1.2295
15 6 9.4278 -3.1751 -1.0324
16 16 10.3460 -4.7059 -0.6826
17 6 9.3684 -5.4296 0.6699
18 6 7.8985 -5.4729 0.2384
19 1 -0.4851 0.8399 0.0004
20 1 3.8752 -0.6796 0.8896
21 1 3.8746 -0.6807 -0.8905
22 1 3.6260 -3.0951 0.7817
23 1 5.8466 -2.1141 0.8901
24 1 5.8466 -2.1142 -0.8898
25 1 5.5642 -4.5781 -0.8889
26 1 5.5642 -4.5772 0.8911
27 1 7.8547 -4.2472 -2.0437
28 1 7.3913 -2.6261 -1.4774
29 1 9.5309 -2.4866 -0.1937
30 1 9.8202 -2.7114 -1.9373
31 1 9.4695 -4.8149 1.5644
32 1 9.7187 -6.4404 0.8787
33 1 7.3040 -5.9390 1.0241
34 1 7.8083 -6.0558 -0.6782
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000230937771.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:35:07
Heat of formation + Delta-G solvation = 5.224357 kcal
Electronic energy + Delta-G solvation = -14016.613279 eV
Core-core repulsion = 11689.453005 eV
Total energy + Delta-G solvation = -2327.160275 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 230.115 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.59440 -35.47301 -32.62582 -31.79501 -31.03491 -28.17570 -25.44418 -23.89448
-21.98527 -21.11609 -20.69448 -17.17339 -16.80450 -15.82573 -15.45689 -15.32113
-14.45517 -14.34121 -14.01629 -13.66118 -13.47178 -13.20918 -12.53094 -12.48582
-12.20359 -12.10748 -11.82203 -11.37165 -11.19904 -10.71011 -10.62234 -10.42216
-9.88779 -9.84149 -9.33091 -8.61902 -8.54468 -7.89185 -7.54037 -6.08741
-4.07154 1.58829 2.31500 3.26793 3.34045 3.36340 3.55804 4.39447
4.59534 4.65439 4.88106 4.94817 4.96766 5.11178 5.20879 5.24613
5.30229 5.44148 5.47446 5.59284 5.63457 5.74649 5.80489 6.13472
6.21231 6.71487 6.86338 6.90498 6.98777 7.55961 7.83641 8.26710
8.60997 8.98789 9.52901 11.04510
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.055988 B = 0.004534 C = 0.004295
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 499.988355 B = 6173.593928 C = 6518.148115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.069 3.931
3 Si 0.878 3.122
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.268 1.268
7 C -0.518 4.518
8 H 0.079 0.921
9 C 0.166 3.834
10 N -0.682 5.682
11 C 0.059 3.941
12 C 0.064 3.936
13 N -0.553 5.553
14 C 0.050 3.950
15 C -0.071 4.071
16 S -0.283 6.283
17 C -0.072 4.072
18 C 0.056 3.944
19 H 0.264 0.736
20 H -0.015 1.015
21 H 0.021 0.979
22 H 0.335 0.665
23 H 0.028 0.972
24 H 0.064 0.936
25 H 0.045 0.955
26 H 0.075 0.925
27 H 0.049 0.951
28 H 0.094 0.906
29 H 0.091 0.909
30 H 0.106 0.894
31 H 0.091 0.909
32 H 0.105 0.895
33 H 0.086 0.914
34 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.990 -8.950 0.219 20.995
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.133 4.133
3 Si 0.705 3.295
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.193 1.193
7 C -0.556 4.556
8 H 0.097 0.903
9 C 0.038 3.962
10 N -0.312 5.312
11 C -0.072 4.072
12 C -0.063 4.063
13 N -0.279 5.279
14 C -0.080 4.080
15 C -0.220 4.220
16 S -0.057 6.057
17 C -0.221 4.221
18 C -0.073 4.073
19 H 0.074 0.926
20 H 0.003 0.997
21 H 0.039 0.961
22 H 0.153 0.847
23 H 0.046 0.954
24 H 0.082 0.918
25 H 0.064 0.936
26 H 0.093 0.907
27 H 0.067 0.933
28 H 0.112 0.888
29 H 0.110 0.890
30 H 0.124 0.876
31 H 0.109 0.891
32 H 0.124 0.876
33 H 0.104 0.896
34 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 19.879 -9.003 -0.580 21.831
hybrid contribution -0.731 1.222 0.827 1.647
sum 19.148 -7.780 0.247 20.670
Atomic orbital electron populations
1.69895 1.06170 1.26945 1.50860 1.24907 0.94758 0.98977 0.94663
0.86816 0.80257 0.83796 0.78611 1.20117 1.21147 1.19260 1.21058
0.88911 0.94850 1.50797 0.90284 1.19983 0.96639 0.84781 0.94793
1.60453 1.04234 1.17066 1.49495 1.21927 0.90479 0.94502 1.00264
1.22044 0.84576 0.98195 1.01533 1.61094 1.09460 1.20646 1.36674
1.22315 0.93854 1.00964 0.90834 1.23519 0.96557 0.96341 1.05588
1.86854 1.42766 1.28013 1.48094 1.23495 0.96239 1.03761 0.98621
1.22198 0.94324 0.89585 1.01228 0.92598 0.99724 0.96073 0.84749
0.95404 0.91755 0.93622 0.90700 0.93308 0.88775 0.89007 0.87554
0.89058 0.87646 0.89594 0.93365
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16
2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16
3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16
4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16
7 C -0.52 -14.83 9.87 -34.44 -0.34 -15.17 16
8 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16
9 C 0.17 4.03 4.51 -4.98 -0.02 4.01 16
10 N -0.68 -13.86 6.49 -115.06 -0.75 -14.61 16
11 C 0.06 0.95 5.61 -3.82 -0.02 0.93 16
12 C 0.06 0.85 5.22 -3.82 -0.02 0.83 16
13 N -0.55 -6.48 4.41 -235.03 -1.04 -7.51 16
14 C 0.05 0.55 5.29 -3.93 -0.02 0.53 16
15 C -0.07 -0.72 6.69 37.29 0.25 -0.47 16
16 S -0.28 -3.04 22.40 -107.50 -2.41 -5.44 16
17 C -0.07 -0.66 6.69 37.29 0.25 -0.41 16
18 C 0.06 0.55 5.42 -3.93 -0.02 0.53 16
19 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
20 H -0.01 -0.36 7.20 -51.93 -0.37 -0.74 16
21 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16
22 H 0.34 6.56 8.72 -39.29 -0.34 6.21 16
23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.06 1.05 6.18 -51.93 -0.32 0.73 16
25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
26 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16
27 H 0.05 0.55 7.91 -51.93 -0.41 0.14 16
28 H 0.09 1.09 5.77 -51.93 -0.30 0.79 16
29 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16
30 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16
31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16
32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16
33 H 0.09 0.76 7.76 -51.93 -0.40 0.36 16
34 H 0.05 0.49 7.91 -51.93 -0.41 0.08 16
LS Contribution 282.33 15.07 4.25 4.25
Total: -1.00 -30.45 282.33 -9.36 -39.82
By element:
Atomic # 1 Polarization: 6.29 SS G_CDS: -5.49 Total: 0.80 kcal
Atomic # 6 Polarization: -7.28 SS G_CDS: -0.04 Total: -7.33 kcal
Atomic # 7 Polarization: -47.98 SS G_CDS: -1.01 Total: -48.99 kcal
Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal
Atomic # 16 Polarization: -3.04 SS G_CDS: -2.41 Total: -5.44 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -30.45 -9.36 -39.82 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230937771.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.040 kcal
(2) G-P(sol) polarization free energy of solvation -30.451 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.224 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds