Wall clock time and date at job start Sun Mar 29 2020 21:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99554 * 2 1 4 4 H 1.48501 * 109.47162 * 269.99766 * 3 2 1 5 5 H 1.48491 * 109.47263 * 30.00261 * 3 2 1 6 6 H 1.48511 * 109.46699 * 150.00088 * 3 2 1 7 7 C 1.37881 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99932 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99649 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00098 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47003 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46645 * 179.97438 * 12 11 10 14 14 C 1.46466 * 111.00008 * 295.97805 * 13 12 11 15 15 C 1.53257 * 109.85942 * 162.23634 * 14 13 12 16 16 S 1.81896 * 108.50319 * 62.00524 * 15 14 13 17 17 C 1.81900 * 101.91729 * 308.69742 * 16 15 14 18 18 C 1.46476 * 110.99642 * 170.00420 * 13 12 11 19 19 H 0.96994 * 120.00775 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46885 * 60.00617 * 9 7 2 21 21 H 1.08999 * 109.47671 * 300.00066 * 9 7 2 22 22 H 1.00905 * 111.00073 * 303.95697 * 10 9 7 23 23 H 1.09003 * 109.46796 * 59.99975 * 11 10 9 24 24 H 1.08992 * 109.46903 * 300.00077 * 11 10 9 25 25 H 1.09001 * 109.46715 * 60.00440 * 12 11 10 26 26 H 1.09001 * 109.47246 * 299.99908 * 12 11 10 27 27 H 1.08996 * 109.41064 * 282.35718 * 14 13 12 28 28 H 1.09003 * 109.40451 * 42.12084 * 14 13 12 29 29 H 1.09000 * 109.62812 * 302.30722 * 15 14 13 30 30 H 1.08992 * 109.79327 * 181.80970 * 15 14 13 31 31 H 1.09006 * 109.63072 * 291.60294 * 17 16 15 32 32 H 1.08997 * 109.79606 * 171.10985 * 17 16 15 33 33 H 1.09003 * 109.40150 * 317.88083 * 18 13 12 34 34 H 1.09001 * 109.40888 * 77.72481 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 5.4698 -2.6181 0.0001 12 6 5.9411 -4.0737 0.0009 13 7 7.4096 -4.1128 0.0003 14 6 7.9497 -3.5288 -1.2295 15 6 9.4278 -3.1751 -1.0324 16 16 10.3460 -4.7059 -0.6826 17 6 9.3684 -5.4296 0.6699 18 6 7.8985 -5.4729 0.2384 19 1 -0.4851 0.8399 0.0004 20 1 3.8752 -0.6796 0.8896 21 1 3.8746 -0.6807 -0.8905 22 1 3.6260 -3.0951 0.7817 23 1 5.8466 -2.1141 0.8901 24 1 5.8466 -2.1142 -0.8898 25 1 5.5642 -4.5781 -0.8889 26 1 5.5642 -4.5772 0.8911 27 1 7.8547 -4.2472 -2.0437 28 1 7.3913 -2.6261 -1.4774 29 1 9.5309 -2.4866 -0.1937 30 1 9.8202 -2.7114 -1.9373 31 1 9.4695 -4.8149 1.5644 32 1 9.7187 -6.4404 0.8787 33 1 7.3040 -5.9390 1.0241 34 1 7.8083 -6.0558 -0.6782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230937771.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:07 Heat of formation + Delta-G solvation = 5.224357 kcal Electronic energy + Delta-G solvation = -14016.613279 eV Core-core repulsion = 11689.453005 eV Total energy + Delta-G solvation = -2327.160275 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.59440 -35.47301 -32.62582 -31.79501 -31.03491 -28.17570 -25.44418 -23.89448 -21.98527 -21.11609 -20.69448 -17.17339 -16.80450 -15.82573 -15.45689 -15.32113 -14.45517 -14.34121 -14.01629 -13.66118 -13.47178 -13.20918 -12.53094 -12.48582 -12.20359 -12.10748 -11.82203 -11.37165 -11.19904 -10.71011 -10.62234 -10.42216 -9.88779 -9.84149 -9.33091 -8.61902 -8.54468 -7.89185 -7.54037 -6.08741 -4.07154 1.58829 2.31500 3.26793 3.34045 3.36340 3.55804 4.39447 4.59534 4.65439 4.88106 4.94817 4.96766 5.11178 5.20879 5.24613 5.30229 5.44148 5.47446 5.59284 5.63457 5.74649 5.80489 6.13472 6.21231 6.71487 6.86338 6.90498 6.98777 7.55961 7.83641 8.26710 8.60997 8.98789 9.52901 11.04510 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.055988 B = 0.004534 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.988355 B = 6173.593928 C = 6518.148115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.518 4.518 8 H 0.079 0.921 9 C 0.166 3.834 10 N -0.682 5.682 11 C 0.059 3.941 12 C 0.064 3.936 13 N -0.553 5.553 14 C 0.050 3.950 15 C -0.071 4.071 16 S -0.283 6.283 17 C -0.072 4.072 18 C 0.056 3.944 19 H 0.264 0.736 20 H -0.015 1.015 21 H 0.021 0.979 22 H 0.335 0.665 23 H 0.028 0.972 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.990 -8.950 0.219 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.556 4.556 8 H 0.097 0.903 9 C 0.038 3.962 10 N -0.312 5.312 11 C -0.072 4.072 12 C -0.063 4.063 13 N -0.279 5.279 14 C -0.080 4.080 15 C -0.220 4.220 16 S -0.057 6.057 17 C -0.221 4.221 18 C -0.073 4.073 19 H 0.074 0.926 20 H 0.003 0.997 21 H 0.039 0.961 22 H 0.153 0.847 23 H 0.046 0.954 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.879 -9.003 -0.580 21.831 hybrid contribution -0.731 1.222 0.827 1.647 sum 19.148 -7.780 0.247 20.670 Atomic orbital electron populations 1.69895 1.06170 1.26945 1.50860 1.24907 0.94758 0.98977 0.94663 0.86816 0.80257 0.83796 0.78611 1.20117 1.21147 1.19260 1.21058 0.88911 0.94850 1.50797 0.90284 1.19983 0.96639 0.84781 0.94793 1.60453 1.04234 1.17066 1.49495 1.21927 0.90479 0.94502 1.00264 1.22044 0.84576 0.98195 1.01533 1.61094 1.09460 1.20646 1.36674 1.22315 0.93854 1.00964 0.90834 1.23519 0.96557 0.96341 1.05588 1.86854 1.42766 1.28013 1.48094 1.23495 0.96239 1.03761 0.98621 1.22198 0.94324 0.89585 1.01228 0.92598 0.99724 0.96073 0.84749 0.95404 0.91755 0.93622 0.90700 0.93308 0.88775 0.89007 0.87554 0.89058 0.87646 0.89594 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.83 9.87 -34.44 -0.34 -15.17 16 8 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 9 C 0.17 4.03 4.51 -4.98 -0.02 4.01 16 10 N -0.68 -13.86 6.49 -115.06 -0.75 -14.61 16 11 C 0.06 0.95 5.61 -3.82 -0.02 0.93 16 12 C 0.06 0.85 5.22 -3.82 -0.02 0.83 16 13 N -0.55 -6.48 4.41 -235.03 -1.04 -7.51 16 14 C 0.05 0.55 5.29 -3.93 -0.02 0.53 16 15 C -0.07 -0.72 6.69 37.29 0.25 -0.47 16 16 S -0.28 -3.04 22.40 -107.50 -2.41 -5.44 16 17 C -0.07 -0.66 6.69 37.29 0.25 -0.41 16 18 C 0.06 0.55 5.42 -3.93 -0.02 0.53 16 19 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 20 H -0.01 -0.36 7.20 -51.93 -0.37 -0.74 16 21 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 22 H 0.34 6.56 8.72 -39.29 -0.34 6.21 16 23 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 1.05 6.18 -51.93 -0.32 0.73 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.94 7.84 -51.93 -0.41 0.54 16 27 H 0.05 0.55 7.91 -51.93 -0.41 0.14 16 28 H 0.09 1.09 5.77 -51.93 -0.30 0.79 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.76 7.76 -51.93 -0.40 0.36 16 34 H 0.05 0.49 7.91 -51.93 -0.41 0.08 16 LS Contribution 282.33 15.07 4.25 4.25 Total: -1.00 -30.45 282.33 -9.36 -39.82 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.49 Total: 0.80 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -0.04 Total: -7.33 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -1.01 Total: -48.99 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Atomic # 16 Polarization: -3.04 SS G_CDS: -2.41 Total: -5.44 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.45 -9.36 -39.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230937771.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.040 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds