Wall clock time and date at job start Sun Mar 29 2020 21:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99554 * 2 1 4 4 H 1.48501 * 109.47162 * 269.99766 * 3 2 1 5 5 H 1.48491 * 109.47263 * 30.00261 * 3 2 1 6 6 H 1.48511 * 109.46699 * 150.00088 * 3 2 1 7 7 C 1.37881 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99932 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99649 * 179.97438 * 7 2 1 10 10 N 1.46902 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.46903 * 111.00098 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47003 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.46645 * 179.97438 * 12 11 10 14 14 C 1.46466 * 111.00008 * 295.97805 * 13 12 11 15 15 C 1.53257 * 109.85942 * 162.23634 * 14 13 12 16 16 S 1.81896 * 108.50319 * 62.00524 * 15 14 13 17 17 C 1.81900 * 101.91729 * 308.69742 * 16 15 14 18 18 C 1.46476 * 110.99642 * 170.00420 * 13 12 11 19 19 H 0.96994 * 120.00775 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46885 * 60.00617 * 9 7 2 21 21 H 1.08999 * 109.47671 * 300.00066 * 9 7 2 22 22 H 1.00905 * 111.00073 * 303.95697 * 10 9 7 23 23 H 1.09003 * 109.46796 * 59.99975 * 11 10 9 24 24 H 1.08992 * 109.46903 * 300.00077 * 11 10 9 25 25 H 1.09001 * 109.46715 * 60.00440 * 12 11 10 26 26 H 1.09001 * 109.47246 * 299.99908 * 12 11 10 27 27 H 1.08996 * 109.41064 * 282.35718 * 14 13 12 28 28 H 1.09003 * 109.40451 * 42.12084 * 14 13 12 29 29 H 1.09000 * 109.62812 * 302.30722 * 15 14 13 30 30 H 1.08992 * 109.79327 * 181.80970 * 15 14 13 31 31 H 1.09006 * 109.63072 * 291.60294 * 17 16 15 32 32 H 1.08997 * 109.79606 * 171.10985 * 17 16 15 33 33 H 1.09003 * 109.40150 * 317.88083 * 18 13 12 34 34 H 1.09001 * 109.40888 * 77.72481 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0013 -2.5790 0.0001 11 6 5.4698 -2.6181 0.0001 12 6 5.9411 -4.0737 0.0009 13 7 7.4096 -4.1128 0.0003 14 6 7.9497 -3.5288 -1.2295 15 6 9.4278 -3.1751 -1.0324 16 16 10.3460 -4.7059 -0.6826 17 6 9.3684 -5.4296 0.6699 18 6 7.8985 -5.4729 0.2384 19 1 -0.4851 0.8399 0.0004 20 1 3.8752 -0.6796 0.8896 21 1 3.8746 -0.6807 -0.8905 22 1 3.6260 -3.0951 0.7817 23 1 5.8466 -2.1141 0.8901 24 1 5.8466 -2.1142 -0.8898 25 1 5.5642 -4.5781 -0.8889 26 1 5.5642 -4.5772 0.8911 27 1 7.8547 -4.2472 -2.0437 28 1 7.3913 -2.6261 -1.4774 29 1 9.5309 -2.4866 -0.1937 30 1 9.8202 -2.7114 -1.9373 31 1 9.4695 -4.8149 1.5644 32 1 9.7187 -6.4404 0.8787 33 1 7.3040 -5.9390 1.0241 34 1 7.8083 -6.0558 -0.6782 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230937771.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:07 Heat of formation + Delta-G solvation = -17.019541 kcal Electronic energy + Delta-G solvation = -14017.577847 eV Core-core repulsion = 11689.453005 eV Total energy + Delta-G solvation = -2328.124842 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56077 -37.05612 -34.64641 -32.62991 -32.28079 -29.74155 -26.95309 -24.73682 -23.35906 -22.78813 -21.69897 -18.96196 -18.01368 -17.08455 -16.57770 -16.48695 -16.08005 -15.37829 -15.02736 -14.99652 -14.73322 -14.46293 -14.18809 -13.82568 -13.46582 -13.16317 -12.97426 -12.64580 -12.52850 -12.30647 -12.09104 -11.83706 -11.53754 -11.49593 -10.82149 -10.68231 -9.47672 -9.19045 -8.72278 -8.31436 -6.36480 0.81797 1.35026 1.36291 1.47336 1.54592 2.33152 2.61037 3.02663 3.62107 3.80047 3.85316 3.96169 4.18265 4.20409 4.29669 4.37847 4.43127 4.56125 4.68398 4.73381 4.78963 4.82702 4.89094 4.93167 5.02609 5.09070 5.49876 5.83449 5.95905 6.02029 6.51682 6.63289 6.74589 7.28795 8.85255 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.055988 B = 0.004534 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.988355 B = 6173.593928 C = 6518.148115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.531 4.531 8 H 0.038 0.962 9 C 0.176 3.824 10 N -0.689 5.689 11 C 0.063 3.937 12 C 0.076 3.924 13 N -0.557 5.557 14 C 0.050 3.950 15 C -0.063 4.063 16 S -0.311 6.311 17 C -0.063 4.063 18 C 0.056 3.944 19 H 0.268 0.732 20 H -0.013 1.013 21 H 0.024 0.976 22 H 0.338 0.662 23 H 0.027 0.973 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.985 -8.591 0.465 22.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.569 4.569 8 H 0.057 0.943 9 C 0.048 3.952 10 N -0.321 5.321 11 C -0.066 4.066 12 C -0.052 4.052 13 N -0.283 5.283 14 C -0.079 4.079 15 C -0.212 4.212 16 S -0.086 6.086 17 C -0.211 4.211 18 C -0.073 4.073 19 H 0.077 0.923 20 H 0.005 0.995 21 H 0.042 0.958 22 H 0.156 0.844 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.117 0.883 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 21.901 -8.671 -0.333 23.557 hybrid contribution -1.376 0.999 0.752 1.860 sum 20.524 -7.672 0.419 21.915 Atomic orbital electron populations 1.70046 1.08185 1.28307 1.52177 1.25884 0.95641 1.03333 0.94052 0.85651 0.79266 0.78329 0.79284 1.18992 1.20559 1.17503 1.21349 0.91385 0.93524 1.50674 0.94339 1.19728 0.93686 0.87059 0.94757 1.60333 1.06966 1.14865 1.49900 1.21942 0.87680 0.96756 1.00261 1.21830 0.85754 0.95903 1.01681 1.61091 1.08250 1.21959 1.36965 1.22315 0.94441 1.00603 0.90577 1.23485 0.95627 0.95865 1.06182 1.86975 1.43729 1.28773 1.49121 1.23523 0.95279 1.04707 0.97607 1.22262 0.94925 0.88479 1.01650 0.92282 0.99503 0.95836 0.84425 0.95430 0.91599 0.94252 0.89848 0.93541 0.89322 0.89195 0.86249 0.89063 0.85704 0.88255 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 2 C 0.01 0.50 5.47 84.66 0.46 0.96 16 3 Si 0.95 43.86 27.47 68.60 1.88 45.75 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 7 C -0.53 -30.84 9.87 25.60 0.25 -30.58 16 8 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 9 C 0.18 8.40 4.51 85.56 0.39 8.78 16 10 N -0.69 -27.50 6.49 -517.92 -3.36 -30.86 16 11 C 0.06 1.96 5.61 86.30 0.48 2.44 16 12 C 0.08 1.88 5.22 86.30 0.45 2.33 16 13 N -0.56 -11.89 4.41 -897.49 -3.96 -15.85 16 14 C 0.05 1.02 5.29 86.47 0.46 1.48 16 15 C -0.06 -1.15 6.69 72.07 0.48 -0.67 16 16 S -0.31 -6.14 22.40 -56.49 -1.27 -7.41 16 17 C -0.06 -1.00 6.69 72.07 0.48 -0.51 16 18 C 0.06 0.97 5.42 86.47 0.47 1.44 16 19 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 20 H -0.01 -0.60 7.20 -2.38 -0.02 -0.61 16 21 H 0.02 1.11 7.57 -2.39 -0.02 1.10 16 22 H 0.34 13.09 8.72 -89.69 -0.78 12.31 16 23 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.07 2.03 6.18 -2.39 -0.01 2.01 16 25 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.92 7.84 -2.39 -0.02 1.90 16 27 H 0.05 0.98 7.91 -2.39 -0.02 0.96 16 28 H 0.09 1.91 5.77 -2.39 -0.01 1.90 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 1.48 8.14 -2.38 -0.02 1.47 16 32 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.10 1.48 7.76 -2.39 -0.02 1.46 16 34 H 0.05 0.84 7.91 -2.39 -0.02 0.83 16 Total: -1.00 -65.01 282.33 -2.24 -67.26 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.23 Total: 14.30 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 3.93 Total: -14.34 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -7.02 Total: -105.56 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.75 kcal Atomic # 16 Polarization: -6.14 SS G_CDS: -1.27 Total: -7.41 kcal Total: -65.01 -2.24 -67.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230937771.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.238 kcal (2) G-P(sol) polarization free energy of solvation -65.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds