Wall clock time and date at job start Sun Mar 29 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 119.99796 * 2 1 4 4 H 1.08000 * 120.00142 * 202.23226 * 3 2 1 5 5 C 1.38812 * 120.00412 * 22.23299 * 3 2 1 6 6 N 1.31622 * 119.99795 * 11.30770 * 5 3 2 7 7 Si 1.86805 * 120.00361 * 191.30516 * 5 3 2 8 8 H 1.48496 * 109.46711 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47031 * 119.99649 * 7 5 3 10 10 H 1.48501 * 109.47236 * 240.00138 * 7 5 3 11 11 C 1.46496 * 120.00009 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47525 * 270.00279 * 11 2 1 13 13 C 1.34234 * 126.50332 * 260.00149 * 12 11 2 14 14 N 1.36829 * 109.92995 * 180.02562 * 13 12 11 15 15 H 0.97002 * 125.05640 * 180.02562 * 14 13 12 16 16 C 1.37678 * 109.87588 * 359.97438 * 14 13 12 17 17 C 1.39124 * 133.51036 * 179.97438 * 16 14 13 18 18 C 1.37751 * 119.78135 * 180.02562 * 17 16 14 19 19 C 1.38837 * 120.66603 * 0.02562 * 18 17 16 20 20 C 1.36627 * 120.52635 * 0.02562 * 19 18 17 21 21 C 1.39627 * 119.76436 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47612 * 274.36991 * 1 2 3 23 23 H 1.09000 * 109.47108 * 34.37026 * 1 2 3 24 24 H 1.08998 * 109.46956 * 154.36932 * 1 2 3 25 25 H 0.96998 * 119.99680 * 180.02562 * 6 5 3 26 26 H 1.09007 * 109.46799 * 149.99943 * 11 2 1 27 27 H 1.09003 * 109.47083 * 30.00960 * 11 2 1 28 28 H 1.07999 * 125.03243 * 359.97438 * 13 12 11 29 29 H 1.07998 * 120.10805 * 0.32243 * 17 16 14 30 30 H 1.08001 * 119.66822 * 179.97438 * 18 17 16 31 31 H 1.07993 * 119.73453 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.11505 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1694 1.2207 -0.3539 5 6 1.5330 2.3434 0.4548 6 7 0.3819 2.2702 1.0889 7 14 2.3369 4.0049 0.1672 8 1 3.6162 3.8160 -0.5626 9 1 1.4291 4.8613 -0.6375 10 1 2.6048 4.6581 1.4737 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.5903 -1.5551 2.1119 14 7 3.4442 -2.0706 3.3709 15 1 4.1337 -2.0786 4.0532 16 6 2.1726 -2.5753 3.5255 17 6 1.5104 -3.1972 4.5791 18 6 0.2026 -3.6004 4.4226 19 6 -0.4635 -3.3930 3.2223 20 6 0.1679 -2.7851 2.1742 21 6 1.4935 -2.3684 2.3110 22 1 -0.3634 0.0783 1.0246 23 1 -0.3633 0.8482 -0.5802 24 1 -0.3633 -0.9265 -0.4445 25 1 -0.0491 3.0791 1.4064 26 1 3.1500 -1.1385 -0.5134 27 1 1.6085 -2.0285 -0.5131 28 1 4.4909 -1.0977 1.7298 29 1 2.0186 -3.3591 5.5183 30 1 -0.3096 -4.0835 5.2416 31 1 -1.4887 -3.7155 3.1159 32 1 -0.3567 -2.6267 1.2436 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258752552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:45 Heat of formation + Delta-G solvation = 82.962559 kcal Electronic energy + Delta-G solvation = -15690.855651 eV Core-core repulsion = 13231.622407 eV Total energy + Delta-G solvation = -2459.233245 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.60499 -36.40773 -35.42067 -32.07584 -30.57415 -28.93938 -28.55686 -25.78980 -25.26098 -22.33611 -21.30518 -21.20018 -18.66774 -17.29781 -16.60064 -15.67425 -15.01416 -14.67317 -13.97942 -13.64945 -13.41797 -13.24947 -12.99891 -12.73387 -12.12005 -11.41745 -11.38466 -11.16424 -10.88389 -10.83713 -10.54411 -10.37493 -10.07080 -9.88961 -9.80992 -8.99645 -8.47673 -7.65053 -7.06611 -6.62487 -5.63491 -3.07538 1.67262 2.15200 3.35526 3.42666 3.48082 3.49704 3.69549 4.44716 4.58631 5.22621 5.42137 5.45454 5.52926 5.63951 5.88694 5.90471 5.94964 6.14886 6.29482 6.42805 6.53273 6.71299 6.76800 6.89679 6.99753 7.14406 7.31626 7.48419 7.50048 7.75525 7.84268 7.91776 8.11261 8.48602 9.32660 9.96566 10.46433 11.41089 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031578 B = 0.008048 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.473475 B = 3478.251622 C = 3695.859197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.592 5.592 3 C -0.247 4.247 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.905 5.905 7 Si 0.901 3.099 8 H -0.279 1.279 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.212 3.788 12 C -0.152 4.152 13 C 0.035 3.965 14 N -0.602 5.602 15 H 0.406 0.594 16 C 0.092 3.908 17 C -0.141 4.141 18 C -0.108 4.108 19 C -0.161 4.161 20 C -0.056 4.056 21 C -0.089 4.089 22 H 0.029 0.971 23 H 0.043 0.957 24 H -0.005 1.005 25 H 0.250 0.750 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.162 0.838 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 -10.693 4.027 11.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.313 5.313 3 C -0.377 4.377 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.220 1.220 11 C 0.084 3.916 12 C -0.162 4.162 13 C -0.090 4.090 14 N -0.205 5.205 15 H 0.242 0.758 16 C -0.016 4.016 17 C -0.162 4.162 18 C -0.127 4.127 19 C -0.181 4.181 20 C -0.074 4.074 21 C -0.094 4.094 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.013 0.987 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.179 0.821 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.914 -10.506 4.086 11.643 hybrid contribution 0.701 1.212 0.615 1.529 sum 3.616 -9.295 4.701 11.026 Atomic orbital electron populations 1.20788 0.82515 0.95196 0.99289 1.44088 1.01915 1.00376 1.84951 1.19249 0.97981 0.85251 1.35248 0.91375 1.25047 0.97783 0.98403 0.98593 1.70095 1.17691 1.26650 1.40564 0.86225 0.78667 0.84635 0.77271 1.20374 1.21679 1.21974 1.19305 0.95963 0.87958 0.88381 1.21742 0.91595 1.02598 1.00246 1.21515 1.00421 1.02888 0.84179 1.41665 1.11320 1.53795 1.13760 0.75815 1.18266 0.85921 1.00847 0.96523 1.19868 0.95404 1.04248 0.96645 1.20632 0.93692 1.00877 0.97472 1.20497 0.99800 1.03916 0.93882 1.20309 0.92666 0.95732 0.98721 1.19164 0.94324 1.02361 0.93563 0.95317 0.93853 0.98672 0.93966 0.93073 0.93659 0.82106 0.87201 0.86639 0.86758 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.25 9.01 59.85 0.54 4.79 16 2 N -0.59 -15.22 2.91 -182.50 -0.53 -15.75 16 3 C -0.25 -6.87 9.67 -15.06 -0.15 -7.01 16 4 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.90 -27.15 10.58 55.49 0.59 -26.56 16 7 Si 0.90 22.20 29.57 -169.99 -5.03 17.17 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 C 0.21 4.51 6.24 -5.20 -0.03 4.48 16 12 C -0.15 -3.15 5.90 -102.71 -0.61 -3.75 16 13 C 0.04 0.64 11.73 -16.73 -0.20 0.44 16 14 N -0.60 -9.81 6.07 -10.65 -0.06 -9.87 16 15 H 0.41 5.05 8.96 -40.82 -0.37 4.69 16 16 C 0.09 1.68 7.28 -83.99 -0.61 1.07 16 17 C -0.14 -2.22 10.08 -39.43 -0.40 -2.62 16 18 C -0.11 -1.62 10.01 -39.54 -0.40 -2.02 16 19 C -0.16 -2.61 9.97 -39.94 -0.40 -3.01 16 20 C -0.06 -1.05 10.05 -39.65 -0.40 -1.44 16 21 C -0.09 -1.80 6.35 -105.14 -0.67 -2.47 16 22 H 0.03 0.80 7.41 -51.93 -0.38 0.42 16 23 H 0.04 1.18 7.19 -51.93 -0.37 0.81 16 24 H -0.01 -0.12 7.83 -51.93 -0.41 -0.52 16 25 H 0.25 7.28 8.31 -40.82 -0.34 6.95 16 26 H 0.05 1.02 8.03 -51.92 -0.42 0.60 16 27 H 0.05 0.89 7.86 -51.93 -0.41 0.49 16 28 H 0.16 2.52 8.06 -52.49 -0.42 2.09 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.12 2.16 8.04 -52.49 -0.42 1.73 16 LS Contribution 275.58 15.07 4.15 4.15 Total: -1.00 -32.35 275.58 -8.30 -40.65 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.02 Total: 1.85 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -3.40 Total: -11.64 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.01 Total: -52.19 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.35 -8.30 -40.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258752552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.614 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds