Wall clock time and date at job start Sun Mar 29 2020 21:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 119.99796 * 2 1 4 4 H 1.08000 * 120.00142 * 202.23226 * 3 2 1 5 5 C 1.38812 * 120.00412 * 22.23299 * 3 2 1 6 6 N 1.31622 * 119.99795 * 11.30770 * 5 3 2 7 7 Si 1.86805 * 120.00361 * 191.30516 * 5 3 2 8 8 H 1.48496 * 109.46711 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47031 * 119.99649 * 7 5 3 10 10 H 1.48501 * 109.47236 * 240.00138 * 7 5 3 11 11 C 1.46496 * 120.00009 * 179.97438 * 2 1 3 12 12 C 1.50700 * 109.47525 * 270.00279 * 11 2 1 13 13 C 1.34234 * 126.50332 * 260.00149 * 12 11 2 14 14 N 1.36829 * 109.92995 * 180.02562 * 13 12 11 15 15 H 0.97002 * 125.05640 * 180.02562 * 14 13 12 16 16 C 1.37678 * 109.87588 * 359.97438 * 14 13 12 17 17 C 1.39124 * 133.51036 * 179.97438 * 16 14 13 18 18 C 1.37751 * 119.78135 * 180.02562 * 17 16 14 19 19 C 1.38837 * 120.66603 * 0.02562 * 18 17 16 20 20 C 1.36627 * 120.52635 * 0.02562 * 19 18 17 21 21 C 1.39627 * 119.76436 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.47612 * 274.36991 * 1 2 3 23 23 H 1.09000 * 109.47108 * 34.37026 * 1 2 3 24 24 H 1.08998 * 109.46956 * 154.36932 * 1 2 3 25 25 H 0.96998 * 119.99680 * 180.02562 * 6 5 3 26 26 H 1.09007 * 109.46799 * 149.99943 * 11 2 1 27 27 H 1.09003 * 109.47083 * 30.00960 * 11 2 1 28 28 H 1.07999 * 125.03243 * 359.97438 * 13 12 11 29 29 H 1.07998 * 120.10805 * 0.32243 * 17 16 14 30 30 H 1.08001 * 119.66822 * 179.97438 * 18 17 16 31 31 H 1.07993 * 119.73453 * 179.97438 * 19 18 17 32 32 H 1.08000 * 120.11505 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1694 1.2207 -0.3539 5 6 1.5330 2.3434 0.4548 6 7 0.3819 2.2702 1.0889 7 14 2.3369 4.0049 0.1672 8 1 3.6162 3.8160 -0.5626 9 1 1.4291 4.8613 -0.6375 10 1 2.6048 4.6581 1.4737 11 6 2.1975 -1.2687 0.0006 12 6 2.4486 -1.7032 1.4215 13 6 3.5903 -1.5551 2.1119 14 7 3.4442 -2.0706 3.3709 15 1 4.1337 -2.0786 4.0532 16 6 2.1726 -2.5753 3.5255 17 6 1.5104 -3.1972 4.5791 18 6 0.2026 -3.6004 4.4226 19 6 -0.4635 -3.3930 3.2223 20 6 0.1679 -2.7851 2.1742 21 6 1.4935 -2.3684 2.3110 22 1 -0.3634 0.0783 1.0246 23 1 -0.3633 0.8482 -0.5802 24 1 -0.3633 -0.9265 -0.4445 25 1 -0.0491 3.0791 1.4064 26 1 3.1500 -1.1385 -0.5134 27 1 1.6085 -2.0285 -0.5131 28 1 4.4909 -1.0977 1.7298 29 1 2.0186 -3.3591 5.5183 30 1 -0.3096 -4.0835 5.2416 31 1 -1.4887 -3.7155 3.1159 32 1 -0.3567 -2.6267 1.2436 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258752552.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:45 Heat of formation + Delta-G solvation = 63.864026 kcal Electronic energy + Delta-G solvation = -15691.683826 eV Core-core repulsion = 13231.622407 eV Total energy + Delta-G solvation = -2460.061419 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.94893 -37.75569 -37.28404 -33.83440 -32.26693 -30.36536 -29.95408 -27.85150 -26.99695 -23.67720 -23.21780 -22.50846 -20.14702 -18.79453 -18.49543 -17.04936 -16.71835 -16.19723 -15.59428 -15.29816 -14.98133 -14.75488 -14.62621 -14.41995 -13.57118 -13.24302 -12.94093 -12.80995 -12.59252 -12.44203 -12.38110 -12.04532 -11.94953 -11.79815 -11.49039 -10.62001 -10.37395 -8.97957 -8.79214 -8.35323 -7.76186 -5.22795 0.35905 0.84175 1.46242 1.47260 1.57749 1.94482 2.43056 2.55738 3.11694 3.38876 3.96420 3.99119 4.10573 4.28966 4.39796 4.55440 4.60241 4.76045 4.87749 4.92052 5.06748 5.15377 5.16852 5.38112 5.39557 5.67634 5.69028 5.77590 5.82330 5.97598 6.06176 6.37437 6.41210 6.90595 7.20800 7.93825 8.39697 9.27679 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031578 B = 0.008048 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.473475 B = 3478.251622 C = 3695.859197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.607 5.607 3 C -0.249 4.249 4 H 0.077 0.923 5 C -0.060 4.060 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.261 1.261 9 H -0.294 1.294 10 H -0.298 1.298 11 C 0.213 3.787 12 C -0.196 4.196 13 C 0.047 3.953 14 N -0.589 5.589 15 H 0.426 0.574 16 C 0.073 3.927 17 C -0.139 4.139 18 C -0.107 4.107 19 C -0.159 4.159 20 C -0.087 4.087 21 C -0.124 4.124 22 H -0.004 1.004 23 H 0.016 0.984 24 H 0.023 0.977 25 H 0.243 0.757 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.185 0.815 29 H 0.143 0.857 30 H 0.154 0.846 31 H 0.139 0.861 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -11.649 5.228 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.329 5.329 3 C -0.380 4.380 4 H 0.095 0.905 5 C -0.254 4.254 6 N -0.589 5.589 7 Si 0.796 3.204 8 H -0.185 1.185 9 H -0.221 1.221 10 H -0.226 1.226 11 C 0.087 3.913 12 C -0.205 4.205 13 C -0.080 4.080 14 N -0.194 5.194 15 H 0.265 0.735 16 C -0.035 4.035 17 C -0.160 4.160 18 C -0.126 4.126 19 C -0.178 4.178 20 C -0.106 4.106 21 C -0.129 4.129 22 H 0.014 0.986 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.202 0.798 29 H 0.161 0.839 30 H 0.172 0.828 31 H 0.157 0.843 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.137 -11.509 5.300 13.329 hybrid contribution 0.341 1.347 0.276 1.417 sum 4.479 -10.162 5.576 12.426 Atomic orbital electron populations 1.20434 0.83112 0.95268 0.96988 1.44281 1.01914 1.01513 1.85236 1.19631 0.98201 0.86213 1.33930 0.90534 1.25815 0.98569 1.01840 0.99148 1.70292 1.19352 1.26879 1.42393 0.85192 0.78272 0.80236 0.76718 1.18543 1.22066 1.22556 1.19337 0.96043 0.86281 0.89593 1.21636 0.93345 1.05470 1.00066 1.21849 1.00436 1.01181 0.84515 1.41609 1.11384 1.52776 1.13614 0.73539 1.18612 0.86521 1.01684 0.96675 1.20331 0.95731 1.02764 0.97158 1.21123 0.93586 0.99954 0.97920 1.20877 1.00906 1.02410 0.93606 1.20437 0.92846 0.97771 0.99552 1.19478 0.95200 1.03503 0.94740 0.98582 0.96563 0.95878 0.94758 0.91888 0.92845 0.79802 0.83896 0.82790 0.84324 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.85 9.01 127.77 1.15 11.00 16 2 N -0.61 -31.58 2.91 -731.32 -2.13 -33.70 16 3 C -0.25 -13.87 9.67 84.03 0.81 -13.06 16 4 H 0.08 4.04 7.84 -2.91 -0.02 4.01 16 5 C -0.06 -3.42 5.13 84.86 0.44 -2.99 16 6 N -0.94 -58.10 10.58 21.65 0.23 -57.87 16 7 Si 0.97 46.04 29.57 68.60 2.03 48.07 16 8 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 9 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 11 C 0.21 9.11 6.24 85.63 0.53 9.64 16 12 C -0.20 -8.05 5.90 -18.63 -0.11 -8.16 16 13 C 0.05 1.63 11.73 83.00 0.97 2.60 16 14 N -0.59 -18.01 6.07 -187.62 -1.14 -19.15 16 15 H 0.43 9.41 8.96 -92.71 -0.83 8.58 16 16 C 0.07 2.53 7.28 39.03 0.28 2.82 16 17 C -0.14 -3.98 10.08 22.37 0.23 -3.76 16 18 C -0.11 -2.88 10.01 22.30 0.22 -2.66 16 19 C -0.16 -4.89 9.97 22.04 0.22 -4.67 16 20 C -0.09 -3.30 10.05 22.23 0.22 -3.08 16 21 C -0.12 -5.02 6.35 -20.20 -0.13 -5.15 16 22 H 0.00 -0.24 7.41 -2.39 -0.02 -0.26 16 23 H 0.02 0.90 7.19 -2.39 -0.02 0.88 16 24 H 0.02 1.04 7.83 -2.39 -0.02 1.03 16 25 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 26 H 0.06 2.47 8.03 -2.38 -0.02 2.45 16 27 H 0.05 2.12 7.86 -2.39 -0.02 2.11 16 28 H 0.18 5.35 8.06 -2.91 -0.02 5.32 16 29 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 30 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 31 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.11 4.08 8.04 -2.91 -0.02 4.05 16 Total: -1.00 -70.60 275.58 4.12 -66.47 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.29 Total: 13.64 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 4.84 Total: -17.45 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -3.04 Total: -110.73 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -70.60 4.12 -66.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258752552.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.337 kcal (2) G-P(sol) polarization free energy of solvation -70.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds