Wall clock time and date at job start Sun Mar 29 2020 21:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30245 * 126.10364 * 2 1 4 4 N 1.39877 * 110.08205 * 179.97438 * 3 2 1 5 5 H 0.96997 * 125.46328 * 179.97438 * 4 3 2 6 6 C 1.37043 * 109.07971 * 0.02562 * 4 3 2 7 7 C 1.39282 * 133.85385 * 180.02562 * 6 4 3 8 8 C 1.36591 * 119.85329 * 179.73929 * 7 6 4 9 9 C 1.38967 * 120.81334 * 0.51653 * 8 7 6 10 10 C 1.50697 * 119.68423 * 179.75116 * 9 8 7 11 11 C 1.52996 * 109.47491 * 269.72719 * 10 9 8 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 C 1.36462 * 120.62814 * 359.48159 * 9 8 7 21 21 C 1.39951 * 119.63679 * 0.25127 * 20 9 8 22 22 H 1.09003 * 109.46985 * 269.99663 * 1 2 3 23 23 H 1.08999 * 109.47104 * 29.99856 * 1 2 3 24 24 H 1.09001 * 109.46814 * 149.99976 * 1 2 3 25 25 H 1.08000 * 120.07046 * 0.02562 * 7 6 4 26 26 H 1.07995 * 119.59340 * 180.27581 * 8 7 6 27 27 H 1.09004 * 109.46801 * 149.72758 * 10 9 8 28 28 H 1.09000 * 109.47461 * 29.73290 * 10 9 8 29 29 H 1.09004 * 109.47066 * 60.00201 * 11 10 9 30 30 H 1.08994 * 109.47405 * 300.00031 * 11 10 9 31 31 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 32 32 H 1.07998 * 120.18195 * 180.22669 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2745 1.0523 0.0000 4 7 3.6190 0.6663 0.0006 5 1 4.3779 1.2703 0.0003 6 6 3.6921 -0.7022 0.0004 7 6 4.7465 -1.6122 0.0012 8 6 4.4872 -2.9533 0.0061 9 6 3.1803 -3.4257 -0.0005 10 6 2.9235 -4.9106 -0.0005 11 6 2.8375 -5.4133 -1.4430 12 6 2.5813 -6.8984 -1.4429 13 1 2.4886 -7.4305 -0.5076 14 6 2.4590 -7.5769 -2.6370 15 7 2.2300 -8.8720 -2.6370 16 14 2.6187 -6.6567 -4.2548 17 1 4.0396 -6.6566 -4.6861 18 1 1.7876 -7.3248 -5.2884 19 1 2.1556 -5.2571 -4.0759 20 6 2.1273 -2.5577 -0.0013 21 6 2.3670 -1.1789 -0.0009 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 5.7668 -1.2582 0.0026 26 1 5.3080 -3.6552 0.0112 27 1 1.9842 -5.1169 0.5127 28 1 3.7381 -5.4203 0.5140 29 1 3.7768 -5.2071 -1.9562 30 1 2.0228 -4.9038 -1.9574 31 1 2.1443 -9.3493 -3.4770 32 1 1.1145 -2.9327 -0.0027 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259977823.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:09 Heat of formation + Delta-G solvation = 63.048668 kcal Electronic energy + Delta-G solvation = -14979.610457 eV Core-core repulsion = 12519.513682 eV Total energy + Delta-G solvation = -2460.096776 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.14692 -37.57366 -33.87004 -33.14112 -31.70799 -30.06939 -28.94570 -27.70264 -24.97230 -22.82719 -21.66793 -20.30959 -19.62423 -17.69501 -16.87908 -16.19998 -15.01270 -14.97608 -14.26194 -14.04284 -13.71136 -13.14641 -13.05624 -12.81167 -12.68509 -12.48324 -11.93122 -11.80792 -11.17820 -11.01318 -10.87850 -10.62028 -10.16110 -9.88318 -9.77995 -9.64777 -9.17465 -8.53179 -8.45857 -7.61806 -6.03760 -4.01741 1.09683 1.73413 2.52361 2.74313 3.31971 3.39639 3.44816 3.99765 4.46542 4.52485 4.64688 4.81506 5.25671 5.30868 5.35747 5.49901 5.58893 5.59087 5.67265 5.82430 6.05863 6.10406 6.30404 6.47813 6.52053 6.62378 6.80088 6.97165 7.11913 7.31396 7.37565 7.46772 7.65824 7.80065 8.54003 9.01344 9.59150 11.09648 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.005939 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.440810 B = 4713.259717 C = 4917.169490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.099 3.901 3 N -0.263 5.263 4 N -0.517 5.517 5 H 0.436 0.564 6 C 0.116 3.884 7 C -0.148 4.148 8 C -0.060 4.060 9 C -0.100 4.100 10 C -0.066 4.066 11 C -0.007 4.007 12 C -0.521 4.521 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.904 5.904 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.046 4.046 21 C -0.173 4.173 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.084 0.916 25 H 0.121 0.879 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.012 0.988 30 H 0.017 0.983 31 H 0.263 0.737 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 17.320 5.491 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 N -0.078 5.078 4 N -0.232 5.232 5 H 0.279 0.721 6 C 0.002 3.998 7 C -0.170 4.170 8 C -0.081 4.081 9 C -0.101 4.101 10 C -0.103 4.103 11 C -0.044 4.044 12 C -0.559 4.559 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.704 3.296 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.066 4.066 21 C -0.181 4.181 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.139 0.861 26 H 0.148 0.852 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.188 18.452 5.372 19.254 hybrid contribution 0.700 -0.140 -1.007 1.235 sum 1.888 18.312 4.365 18.919 Atomic orbital electron populations 1.20241 0.85855 1.03854 1.03359 1.23521 0.96627 0.88887 0.98843 1.76418 0.87525 1.23459 1.20428 1.45726 1.05379 1.03556 1.68555 0.72052 1.18791 0.95822 0.84650 1.00556 1.19758 0.96460 0.92053 1.08755 1.20768 0.97128 0.94181 0.96004 1.19906 0.92346 0.97570 1.00315 1.20578 1.01714 0.87754 1.00270 1.19567 0.96468 0.96863 0.91543 1.21163 1.48982 0.91242 0.94488 0.90918 1.25010 0.94569 0.94683 0.99109 1.69913 1.49869 1.07657 1.26868 0.86816 0.78339 0.80683 0.83726 1.20328 1.21399 1.18907 1.20269 0.99597 0.89637 0.97095 1.19773 0.91543 0.94236 1.12503 0.90040 0.90560 0.89765 0.86068 0.85162 0.91638 0.91670 0.96990 0.96488 0.92752 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.48 36.01 0.38 -0.36 16 2 C 0.10 1.38 7.43 -80.19 -0.60 0.78 16 3 N -0.26 -3.76 12.55 34.84 0.44 -3.33 16 4 N -0.52 -6.77 7.37 32.36 0.24 -6.53 16 5 H 0.44 4.20 8.96 -182.77 -1.64 2.57 16 6 C 0.12 1.71 7.34 -84.17 -0.62 1.09 16 7 C -0.15 -2.02 10.03 -39.79 -0.40 -2.42 16 8 C -0.06 -0.91 9.60 -39.91 -0.38 -1.29 16 9 C -0.10 -1.69 5.10 -104.99 -0.54 -2.22 16 10 C -0.07 -1.26 5.26 -27.89 -0.15 -1.41 16 11 C -0.01 -0.17 4.02 -27.88 -0.11 -0.28 16 12 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 15 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 16 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 20 C -0.05 -0.73 9.68 -39.58 -0.38 -1.11 16 21 C -0.17 -2.68 6.33 -105.21 -0.67 -3.34 16 22 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 29 H 0.01 0.28 7.58 -51.93 -0.39 -0.11 16 30 H 0.02 0.40 7.19 -51.93 -0.37 0.03 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 32 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 277.28 15.07 4.18 4.18 Total: -1.00 -32.46 277.28 -8.30 -40.76 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.37 Total: -1.52 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.89 Total: -23.69 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 1.45 Total: -36.87 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.46 -8.30 -40.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259977823.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.813 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds