Wall clock time and date at job start Sun Mar 29 2020 21:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39864 * 125.45949 * 2 1 4 4 C 1.30243 * 110.08646 * 180.02562 * 3 2 1 5 5 C 1.45931 * 107.78336 * 359.97438 * 4 3 2 6 6 C 1.39947 * 134.03065 * 180.02562 * 5 4 3 7 7 C 1.36462 * 119.63248 * 179.78772 * 6 5 4 8 8 C 1.38959 * 120.63130 * 0.48575 * 7 6 5 9 9 C 1.50702 * 119.59447 * 179.74810 * 8 7 6 10 10 C 1.53001 * 109.47327 * 269.72859 * 9 8 7 11 11 C 1.50697 * 109.46995 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00449 * 359.72153 * 11 10 9 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 C 1.36590 * 120.81578 * 359.47212 * 8 7 6 20 20 C 1.37040 * 125.45812 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47430 * 269.99658 * 1 2 3 22 22 H 1.09000 * 109.47720 * 29.99749 * 1 2 3 23 23 H 1.09006 * 109.47178 * 150.00095 * 1 2 3 24 24 H 1.08000 * 126.10927 * 179.97438 * 4 3 2 25 25 H 1.07995 * 120.18027 * 359.97319 * 6 5 4 26 26 H 1.08009 * 119.68386 * 180.23149 * 7 6 5 27 27 H 1.08998 * 109.47519 * 149.72561 * 9 8 7 28 28 H 1.09006 * 109.47270 * 29.72791 * 9 8 7 29 29 H 1.08998 * 109.47065 * 59.99424 * 10 9 8 30 30 H 1.09001 * 109.46892 * 299.99688 * 10 9 8 31 31 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 32 32 H 1.08006 * 120.07887 * 180.29977 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1392 0.0000 4 6 3.5322 0.7940 -0.0005 5 6 3.5936 -0.6641 -0.0003 6 6 4.6398 -1.5936 -0.0002 7 6 4.3563 -2.9284 0.0044 8 6 3.0397 -3.3727 -0.0012 9 6 2.7534 -4.8523 -0.0017 10 6 2.6562 -5.3525 -1.4443 11 6 2.3706 -6.8321 -1.4447 12 1 2.2731 -7.3636 -0.5097 13 6 2.2389 -7.5085 -2.6391 14 7 2.3571 -6.8612 -3.7778 15 14 1.8925 -9.3441 -2.6396 16 1 1.8058 -9.8319 -1.2398 17 1 0.6070 -9.6050 -3.3357 18 1 2.9899 -10.0546 -3.3439 19 6 2.0017 -2.4849 -0.0005 20 6 2.2600 -1.1162 -0.0005 21 1 -0.3634 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 4.3772 1.4665 -0.0011 25 1 5.6657 -1.2563 -0.0007 26 1 5.1631 -3.6465 0.0083 27 1 1.8108 -5.0402 0.5124 28 1 3.5584 -5.3783 0.5118 29 1 3.5988 -5.1645 -1.9583 30 1 1.8512 -4.8266 -1.9577 31 1 2.2641 -7.3370 -4.6180 32 1 0.9828 -2.8433 0.0000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260028425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:01 Heat of formation + Delta-G solvation = 71.701219 kcal Electronic energy + Delta-G solvation = -14956.487086 eV Core-core repulsion = 12496.765513 eV Total energy + Delta-G solvation = -2459.721573 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.99818 -37.46021 -33.85307 -33.20250 -31.65270 -30.04188 -28.52676 -26.38759 -25.04978 -22.52099 -21.74510 -20.66744 -19.86774 -16.81939 -16.55528 -16.14563 -15.33963 -14.81514 -14.47611 -14.26036 -13.66154 -13.16221 -12.97969 -12.61142 -12.48396 -12.40992 -11.72654 -11.52588 -11.00597 -10.93106 -10.70460 -10.63282 -10.49830 -9.88469 -9.79998 -9.58997 -9.10908 -8.37090 -8.03995 -7.62300 -6.01466 -4.04687 1.25864 1.85478 2.54583 2.70733 3.30036 3.37712 3.41587 4.13353 4.44913 4.57945 4.78821 4.96484 5.21626 5.31759 5.34371 5.39498 5.43963 5.60066 5.67435 5.89854 6.15692 6.19088 6.38138 6.61201 6.64889 6.77462 6.95413 7.08914 7.13371 7.33786 7.66415 7.78006 7.80168 7.98361 8.38352 9.02668 9.59584 11.09587 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042121 B = 0.005297 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.599531 B = 5284.893877 C = 5596.677698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.415 5.415 3 N -0.267 5.267 4 C 0.071 3.929 5 C -0.198 4.198 6 C -0.045 4.045 7 C -0.150 4.150 8 C -0.005 4.005 9 C -0.082 4.082 10 C 0.030 3.970 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.149 4.149 20 C 0.133 3.867 21 H 0.065 0.935 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.192 0.808 25 H 0.123 0.877 26 H 0.126 0.874 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.019 0.981 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.659 12.332 7.941 14.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.204 5.204 3 N -0.079 5.079 4 C -0.126 4.126 5 C -0.206 4.206 6 C -0.066 4.066 7 C -0.170 4.170 8 C -0.008 4.008 9 C -0.119 4.119 10 C -0.007 4.007 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.171 4.171 20 C 0.019 3.981 21 H 0.084 0.916 22 H 0.101 0.899 23 H 0.103 0.897 24 H 0.209 0.791 25 H 0.141 0.859 26 H 0.144 0.856 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.382 13.310 7.755 15.409 hybrid contribution 0.233 -1.623 -0.239 1.657 sum -0.150 11.687 7.516 13.896 Atomic orbital electron populations 1.21691 0.74523 1.04107 1.02622 1.48050 1.05599 1.01173 1.65622 1.76465 1.02745 1.09340 1.19338 1.24958 0.94515 0.93283 0.99876 1.19826 0.93229 0.93056 1.14477 1.20258 0.97297 0.92005 0.97025 1.20677 0.96587 0.95179 1.04548 1.19952 0.92206 0.97106 0.91556 1.20915 1.01099 0.87959 1.01965 1.19079 0.97585 0.95531 0.88531 1.21286 1.48631 0.93717 0.92384 0.92482 1.25029 0.95404 0.98333 0.95651 1.69985 1.50204 1.35867 0.97273 0.86538 0.77866 0.85524 0.78098 1.19689 1.21038 1.20994 1.19674 1.00004 0.88190 1.09239 1.18819 0.90575 0.89403 0.99278 0.91626 0.89852 0.89672 0.79124 0.85874 0.85578 0.92065 0.91768 0.96269 0.96425 0.93020 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.25 11.40 59.85 0.68 1.93 16 2 N -0.42 -6.37 4.05 -65.47 -0.27 -6.63 16 3 N -0.27 -4.06 12.40 31.87 0.40 -3.66 16 4 C 0.07 0.96 12.28 -15.15 -0.19 0.78 16 5 C -0.20 -3.11 6.37 -105.20 -0.67 -3.78 16 6 C -0.05 -0.67 10.07 -39.58 -0.40 -1.07 16 7 C -0.15 -2.47 9.60 -39.96 -0.38 -2.86 16 8 C -0.01 -0.10 5.10 -104.95 -0.54 -0.64 16 9 C -0.08 -1.66 5.26 -27.88 -0.15 -1.81 16 10 C 0.03 0.76 4.96 -27.88 -0.14 0.62 16 11 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 15 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.15 -2.60 9.58 -39.79 -0.38 -2.98 16 20 C 0.13 2.24 6.87 -84.17 -0.58 1.66 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.19 1.74 8.06 -52.49 -0.42 1.32 16 25 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.13 1.91 8.06 -52.48 -0.42 1.48 16 27 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 281.77 15.07 4.25 4.25 Total: -1.00 -32.40 281.77 -7.24 -39.64 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -4.18 Total: -2.43 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -3.15 Total: -21.47 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.87 Total: -36.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.40 -7.24 -39.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.342 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds