Wall clock time and date at job start Sun Mar 29 2020 21:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39864 * 125.45949 * 2 1 4 4 C 1.30243 * 110.08646 * 180.02562 * 3 2 1 5 5 C 1.45931 * 107.78336 * 359.97438 * 4 3 2 6 6 C 1.39947 * 134.03065 * 180.02562 * 5 4 3 7 7 C 1.36462 * 119.63248 * 179.78772 * 6 5 4 8 8 C 1.38959 * 120.63130 * 0.48575 * 7 6 5 9 9 C 1.50702 * 119.59447 * 179.74810 * 8 7 6 10 10 C 1.53001 * 109.47327 * 269.72859 * 9 8 7 11 11 C 1.50697 * 109.46995 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00449 * 359.72153 * 11 10 9 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 C 1.36590 * 120.81578 * 359.47212 * 8 7 6 20 20 C 1.37040 * 125.45812 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.47430 * 269.99658 * 1 2 3 22 22 H 1.09000 * 109.47720 * 29.99749 * 1 2 3 23 23 H 1.09006 * 109.47178 * 150.00095 * 1 2 3 24 24 H 1.08000 * 126.10927 * 179.97438 * 4 3 2 25 25 H 1.07995 * 120.18027 * 359.97319 * 6 5 4 26 26 H 1.08009 * 119.68386 * 180.23149 * 7 6 5 27 27 H 1.08998 * 109.47519 * 149.72561 * 9 8 7 28 28 H 1.09006 * 109.47270 * 29.72791 * 9 8 7 29 29 H 1.08998 * 109.47065 * 59.99424 * 10 9 8 30 30 H 1.09001 * 109.46892 * 299.99688 * 10 9 8 31 31 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 32 32 H 1.08006 * 120.07887 * 180.29977 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1392 0.0000 4 6 3.5322 0.7940 -0.0005 5 6 3.5936 -0.6641 -0.0003 6 6 4.6398 -1.5936 -0.0002 7 6 4.3563 -2.9284 0.0044 8 6 3.0397 -3.3727 -0.0012 9 6 2.7534 -4.8523 -0.0017 10 6 2.6562 -5.3525 -1.4443 11 6 2.3706 -6.8321 -1.4447 12 1 2.2731 -7.3636 -0.5097 13 6 2.2389 -7.5085 -2.6391 14 7 2.3571 -6.8612 -3.7778 15 14 1.8925 -9.3441 -2.6396 16 1 1.8058 -9.8319 -1.2398 17 1 0.6070 -9.6050 -3.3357 18 1 2.9899 -10.0546 -3.3439 19 6 2.0017 -2.4849 -0.0005 20 6 2.2600 -1.1162 -0.0005 21 1 -0.3634 -0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 4.3772 1.4665 -0.0011 25 1 5.6657 -1.2563 -0.0007 26 1 5.1631 -3.6465 0.0083 27 1 1.8108 -5.0402 0.5124 28 1 3.5584 -5.3783 0.5118 29 1 3.5988 -5.1645 -1.9583 30 1 1.8512 -4.8266 -1.9577 31 1 2.2641 -7.3370 -4.6180 32 1 0.9828 -2.8433 0.0000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260028425.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:00 Heat of formation + Delta-G solvation = 52.935983 kcal Electronic energy + Delta-G solvation = -14957.300808 eV Core-core repulsion = 12496.765513 eV Total energy + Delta-G solvation = -2460.535295 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.16070 -38.76028 -35.66401 -34.45471 -33.37899 -31.22920 -30.15563 -27.42332 -26.87249 -23.98387 -23.22981 -21.91351 -21.25605 -18.55801 -17.94100 -17.55651 -16.53327 -16.40372 -16.15126 -15.33025 -14.90580 -14.62764 -14.42278 -14.11276 -13.91446 -13.50941 -13.39778 -13.04543 -12.84925 -12.42488 -12.33126 -12.01379 -11.87393 -11.62770 -11.48872 -11.14990 -10.96356 -10.55429 -9.38742 -8.79736 -8.18836 -6.30697 0.03854 0.59997 1.41777 1.42059 1.49697 1.55413 1.58127 2.42179 2.87365 3.14515 3.55468 3.65562 3.86879 4.04397 4.34302 4.35830 4.40298 4.46703 4.61202 4.65119 4.80194 4.86959 4.90237 5.07726 5.21189 5.44333 5.51972 5.57757 5.59704 5.85209 5.89168 5.96506 6.11799 6.23909 6.66235 6.86775 7.38966 8.93021 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.042121 B = 0.005297 C = 0.005002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.599531 B = 5284.893877 C = 5596.677698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.424 5.424 3 N -0.285 5.285 4 C 0.084 3.916 5 C -0.212 4.212 6 C -0.031 4.031 7 C -0.168 4.168 8 C -0.026 4.026 9 C -0.067 4.067 10 C 0.037 3.963 11 C -0.541 4.541 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.259 1.259 17 H -0.280 1.280 18 H -0.278 1.278 19 C -0.160 4.160 20 C 0.113 3.887 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.237 0.763 25 H 0.163 0.837 26 H 0.135 0.865 27 H 0.064 0.936 28 H 0.072 0.928 29 H -0.007 1.007 30 H -0.013 1.013 31 H 0.263 0.737 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 12.832 8.837 15.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.213 5.213 3 N -0.097 5.097 4 C -0.113 4.113 5 C -0.220 4.220 6 C -0.051 4.051 7 C -0.188 4.188 8 C -0.029 4.029 9 C -0.104 4.104 10 C 0.000 4.000 11 C -0.579 4.579 12 H 0.083 0.917 13 C -0.198 4.198 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.183 1.183 17 H -0.206 1.206 18 H -0.204 1.204 19 C -0.182 4.182 20 C -0.002 4.002 21 H 0.099 0.901 22 H 0.116 0.884 23 H 0.105 0.895 24 H 0.253 0.747 25 H 0.181 0.819 26 H 0.153 0.847 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.011 0.989 30 H 0.005 0.995 31 H 0.072 0.928 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.250 13.821 8.670 16.318 hybrid contribution 0.032 -1.661 -0.521 1.741 sum 0.282 12.161 8.149 14.641 Atomic orbital electron populations 1.21957 0.72843 1.04969 1.03946 1.48401 1.06791 1.00720 1.65401 1.76458 1.03550 1.09509 1.20179 1.25680 0.95151 0.92723 0.97720 1.20274 0.92993 0.94512 1.14209 1.20624 0.99035 0.90933 0.94514 1.20844 0.95947 0.96518 1.05472 1.19836 0.93577 0.95802 0.93683 1.20632 1.01650 0.89811 0.98338 1.18905 0.94872 0.94720 0.91494 1.21739 1.48339 0.94968 0.92848 0.91715 1.25994 0.95039 1.03613 0.95185 1.70124 1.51312 1.38067 0.98044 0.85382 0.77733 0.79129 0.78706 1.18314 1.20556 1.20417 1.19690 0.99889 0.88885 1.09751 1.18986 0.91947 0.89507 0.99719 0.90067 0.88360 0.89485 0.74733 0.81946 0.84695 0.91743 0.90925 0.98898 0.99451 0.92823 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.22 11.40 127.77 1.46 3.68 16 2 N -0.42 -12.59 4.05 -361.03 -1.46 -14.05 16 3 N -0.28 -8.09 12.40 -53.09 -0.66 -8.75 16 4 C 0.08 2.03 12.28 86.92 1.07 3.10 16 5 C -0.21 -6.25 6.37 -20.24 -0.13 -6.38 16 6 C -0.03 -0.84 10.07 22.27 0.22 -0.62 16 7 C -0.17 -5.42 9.60 22.03 0.21 -5.20 16 8 C -0.03 -0.97 5.10 -20.08 -0.10 -1.08 16 9 C -0.07 -2.77 5.26 29.85 0.16 -2.61 16 10 C 0.04 1.98 4.96 29.85 0.15 2.12 16 11 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 12 H 0.06 3.47 7.74 -2.92 -0.02 3.45 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 14 N -0.94 -57.32 13.29 21.45 0.28 -57.04 16 15 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 16 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 17 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 C -0.16 -5.68 9.58 22.14 0.21 -5.47 16 20 C 0.11 3.74 6.87 39.21 0.27 4.01 16 21 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 22 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 23 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.24 3.20 8.06 -2.91 -0.02 3.18 16 25 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 26 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 27 H 0.06 2.56 8.07 -2.39 -0.02 2.54 16 28 H 0.07 2.82 8.08 -2.38 -0.02 2.80 16 29 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.12 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -70.45 281.77 5.50 -64.95 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.10 Total: 7.24 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 4.21 Total: -38.38 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.84 Total: -79.84 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -70.45 5.50 -64.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028425.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.886 kcal (2) G-P(sol) polarization free energy of solvation -70.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds