Wall clock time and date at job start Sun Mar 29 2020 21:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47260 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47199 * 300.00124 * 3 2 1 6 6 H 1.48499 * 109.47306 * 59.99665 * 3 2 1 7 7 C 1.37878 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46966 * 180.02562 * 10 9 7 12 12 C 1.38262 * 120.00109 * 269.97741 * 11 10 9 13 13 C 1.38211 * 120.00000 * 179.97438 * 12 11 10 14 14 C 1.38259 * 119.99966 * 359.79201 * 13 12 11 15 15 C 1.38220 * 119.99866 * 0.48688 * 14 13 12 16 16 C 1.50697 * 119.99851 * 179.76775 * 15 14 13 17 17 C 1.53786 * 113.61519 * 320.58540 * 16 15 14 18 18 C 1.54049 * 86.98426 * 140.01979 * 17 16 15 19 19 C 1.53781 * 113.61630 * 58.19489 * 16 15 14 20 20 C 1.38213 * 120.00127 * 90.00235 * 11 10 9 21 21 H 0.97008 * 120.00434 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46933 * 60.00043 * 9 7 2 23 23 H 1.08995 * 109.47138 * 300.00420 * 9 7 2 24 24 H 1.09006 * 109.46811 * 60.00288 * 10 9 7 25 25 H 1.09001 * 109.46930 * 300.00408 * 10 9 7 26 26 H 1.07994 * 119.99627 * 0.02562 * 12 11 10 27 27 H 1.07994 * 119.99786 * 180.02562 * 13 12 11 28 28 H 1.07994 * 119.99903 * 180.24942 * 14 13 12 29 29 H 1.09002 * 112.84782 * 189.39130 * 16 15 14 30 30 H 1.08992 * 113.61675 * 254.61723 * 17 16 15 31 31 H 1.09000 * 113.60973 * 25.52011 * 17 16 15 32 32 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 33 33 H 1.08996 * 113.68970 * 89.12734 * 18 17 16 34 34 H 1.08999 * 113.61567 * 334.48200 * 19 16 15 35 35 H 1.08998 * 113.61196 * 105.38554 * 19 16 15 36 36 H 1.07999 * 119.99829 * 359.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9671 -0.0001 12 6 1.1461 -5.5664 1.1970 13 6 0.4546 -6.7631 1.1964 14 6 0.1047 -7.3587 -0.0013 15 6 0.4553 -6.7625 -1.1980 16 6 0.0785 -7.4144 -2.5034 17 6 0.2214 -8.9456 -2.4912 18 6 -1.0898 -8.9929 -3.2985 19 6 -1.4347 -7.6331 -2.6686 20 6 1.1467 -5.5653 -1.1973 21 1 -0.4851 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8719 -3.6043 0.8906 25 1 2.8720 -3.6042 -0.8894 26 1 1.4158 -5.0990 2.1324 27 1 0.1842 -7.2309 2.1314 28 1 -0.4392 -8.2917 -0.0017 29 1 0.5476 -6.9390 -3.3648 30 1 1.0888 -9.3076 -3.0429 31 1 0.1379 -9.3839 -1.4967 32 1 -1.7604 -9.7971 -2.9955 33 1 -0.9416 -8.9493 -4.3774 34 1 -1.9701 -7.7133 -1.7226 35 1 -1.9032 -6.9362 -3.3636 36 1 1.4167 -5.0972 -2.1324 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260128442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:17 Heat of formation + Delta-G solvation = 15.484322 kcal Electronic energy + Delta-G solvation = -15134.844949 eV Core-core repulsion = 12776.225972 eV Total energy + Delta-G solvation = -2358.618977 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80783 -37.74189 -33.96270 -32.02283 -30.83817 -28.82933 -25.62999 -25.30588 -25.00292 -22.08211 -21.41230 -20.25744 -18.62628 -16.60754 -16.15133 -15.63832 -14.92588 -14.56118 -14.46059 -13.81368 -13.09740 -12.76434 -12.51710 -12.48579 -12.37338 -12.24494 -11.74425 -11.32583 -11.15647 -10.94780 -10.79091 -10.54450 -10.43036 -10.39485 -10.11036 -9.76631 -9.56163 -9.06149 -8.36143 -8.29251 -7.99000 -5.98516 -4.01583 1.78372 1.86904 3.31741 3.39139 3.43353 4.14886 4.47260 4.60998 4.68411 4.70622 5.04648 5.20647 5.32106 5.37084 5.40551 5.56591 5.63534 5.70726 5.73315 5.81866 5.92732 5.95472 5.99893 6.17560 6.22748 6.42337 6.46825 6.59147 6.69739 6.89963 7.00794 7.04978 7.21742 7.49917 7.70110 7.84616 8.01783 8.42386 9.05804 9.62465 11.12567 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.004923 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.353386 B = 5686.435592 C = 6012.470758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.030 3.970 10 C -0.081 4.081 11 C -0.054 4.054 12 C -0.125 4.125 13 C -0.119 4.119 14 C -0.137 4.137 15 C -0.074 4.074 16 C -0.071 4.071 17 C -0.134 4.134 18 C -0.144 4.144 19 C -0.132 4.132 20 C -0.117 4.117 21 H 0.260 0.740 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -16.934 -3.267 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.118 4.118 11 C -0.054 4.054 12 C -0.143 4.143 13 C -0.137 4.137 14 C -0.155 4.155 15 C -0.074 4.074 16 C -0.089 4.089 17 C -0.171 4.171 18 C -0.181 4.181 19 C -0.169 4.169 20 C -0.135 4.135 21 H 0.069 0.931 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.869 -16.816 -3.270 17.153 hybrid contribution 0.340 1.061 0.057 1.115 sum -0.529 -15.756 -3.213 16.089 Atomic orbital electron populations 1.69983 1.06073 1.26473 1.50836 1.25023 0.94827 0.99239 0.95323 0.86546 0.80129 0.83811 0.77579 1.19708 1.21010 1.21012 1.21306 0.93092 0.90992 1.50594 0.92552 1.19070 0.93670 0.90461 0.97505 1.20843 0.98355 0.91389 1.01212 1.20360 0.96346 0.96072 0.92584 1.21066 0.99757 0.95534 0.97983 1.21018 0.99167 0.96085 0.97455 1.20755 1.02345 1.00274 0.92103 1.19617 0.98393 0.95266 0.94094 1.21490 0.96757 0.95194 0.95474 1.23072 0.97717 0.95640 1.00681 1.22886 0.97759 0.97826 0.99641 1.22979 0.95674 0.96978 1.01269 1.20958 0.99588 0.94977 0.97978 0.93054 0.96474 0.96456 0.92285 0.92319 0.86375 0.86789 0.86953 0.88762 0.91592 0.89831 0.91655 0.90317 0.89902 0.91368 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.79 4.95 -27.88 -0.14 0.66 16 10 C -0.08 -1.73 5.28 -27.88 -0.15 -1.87 16 11 C -0.05 -1.02 5.13 -104.62 -0.54 -1.56 16 12 C -0.13 -2.18 9.70 -39.58 -0.38 -2.57 16 13 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 14 C -0.14 -1.96 8.53 -39.58 -0.34 -2.30 16 15 C -0.07 -1.11 5.29 -104.63 -0.55 -1.67 16 16 C -0.07 -0.87 3.97 -90.96 -0.36 -1.23 16 17 C -0.13 -1.36 7.48 -25.77 -0.19 -1.55 16 18 C -0.14 -1.33 8.09 -25.78 -0.21 -1.53 16 19 C -0.13 -1.47 7.54 -25.92 -0.20 -1.66 16 20 C -0.12 -2.05 9.36 -39.59 -0.37 -2.42 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 25 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 26 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 27 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.11 1.34 6.73 -52.49 -0.35 0.99 16 29 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.84 6.41 -51.93 -0.33 0.50 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.95 7.62 -51.93 -0.40 0.55 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.12 1.99 8.05 -52.49 -0.42 1.56 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -30.51 298.18 -9.71 -40.23 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.69 Total: -1.32 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: -4.24 Total: -33.63 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.51 -9.71 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.710 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds