Wall clock time and date at job start Sun Mar 29 2020 21:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48502 * 109.47260 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47199 * 300.00124 * 3 2 1 6 6 H 1.48499 * 109.47306 * 59.99665 * 3 2 1 7 7 C 1.37878 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47340 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46966 * 180.02562 * 10 9 7 12 12 C 1.38262 * 120.00109 * 269.97741 * 11 10 9 13 13 C 1.38211 * 120.00000 * 179.97438 * 12 11 10 14 14 C 1.38259 * 119.99966 * 359.79201 * 13 12 11 15 15 C 1.38220 * 119.99866 * 0.48688 * 14 13 12 16 16 C 1.50697 * 119.99851 * 179.76775 * 15 14 13 17 17 C 1.53786 * 113.61519 * 320.58540 * 16 15 14 18 18 C 1.54049 * 86.98426 * 140.01979 * 17 16 15 19 19 C 1.53781 * 113.61630 * 58.19489 * 16 15 14 20 20 C 1.38213 * 120.00127 * 90.00235 * 11 10 9 21 21 H 0.97008 * 120.00434 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46933 * 60.00043 * 9 7 2 23 23 H 1.08995 * 109.47138 * 300.00420 * 9 7 2 24 24 H 1.09006 * 109.46811 * 60.00288 * 10 9 7 25 25 H 1.09001 * 109.46930 * 300.00408 * 10 9 7 26 26 H 1.07994 * 119.99627 * 0.02562 * 12 11 10 27 27 H 1.07994 * 119.99786 * 180.02562 * 13 12 11 28 28 H 1.07994 * 119.99903 * 180.24942 * 14 13 12 29 29 H 1.09002 * 112.84782 * 189.39130 * 16 15 14 30 30 H 1.08992 * 113.61675 * 254.61723 * 17 16 15 31 31 H 1.09000 * 113.60973 * 25.52011 * 17 16 15 32 32 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 33 33 H 1.08996 * 113.68970 * 89.12734 * 18 17 16 34 34 H 1.08999 * 113.61567 * 334.48200 * 19 16 15 35 35 H 1.08998 * 113.61196 * 105.38554 * 19 16 15 36 36 H 1.07999 * 119.99829 * 359.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9671 -0.0001 12 6 1.1461 -5.5664 1.1970 13 6 0.4546 -6.7631 1.1964 14 6 0.1047 -7.3587 -0.0013 15 6 0.4553 -6.7625 -1.1980 16 6 0.0785 -7.4144 -2.5034 17 6 0.2214 -8.9456 -2.4912 18 6 -1.0898 -8.9929 -3.2985 19 6 -1.4347 -7.6331 -2.6686 20 6 1.1467 -5.5653 -1.1973 21 1 -0.4851 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.8719 -3.6043 0.8906 25 1 2.8720 -3.6042 -0.8894 26 1 1.4158 -5.0990 2.1324 27 1 0.1842 -7.2309 2.1314 28 1 -0.4392 -8.2917 -0.0017 29 1 0.5476 -6.9390 -3.3648 30 1 1.0888 -9.3076 -3.0429 31 1 0.1379 -9.3839 -1.4967 32 1 -1.7604 -9.7971 -2.9955 33 1 -0.9416 -8.9493 -4.3774 34 1 -1.9701 -7.7133 -1.7226 35 1 -1.9032 -6.9362 -3.3636 36 1 1.4167 -5.0972 -2.1324 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260128442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:16 Heat of formation + Delta-G solvation = 1.070088 kcal Electronic energy + Delta-G solvation = -15135.469997 eV Core-core repulsion = 12776.225972 eV Total energy + Delta-G solvation = -2359.244025 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91364 -38.84857 -35.88304 -33.90144 -32.03775 -30.58127 -26.96465 -26.42300 -26.30167 -23.77564 -22.73635 -21.62561 -19.69889 -18.55840 -17.58205 -16.71134 -16.53482 -16.08531 -15.72755 -15.04675 -14.62032 -14.30356 -14.16465 -13.96630 -13.39989 -13.35294 -13.21370 -12.86778 -12.83169 -12.44313 -12.33712 -12.05006 -11.81830 -11.58940 -11.34518 -11.27073 -11.22544 -10.93318 -10.58961 -9.59691 -9.34878 -8.21753 -6.34555 0.51366 0.56292 1.39036 1.39566 1.53360 2.39566 2.88577 3.10841 3.73016 3.75090 3.89744 4.08595 4.10937 4.15362 4.24041 4.30800 4.50845 4.63731 4.76082 4.82985 4.84149 4.89997 4.93703 5.02370 5.12077 5.13296 5.20862 5.27749 5.34007 5.46385 5.55100 5.58048 5.63016 5.80051 5.82790 5.93006 6.18509 6.22980 6.82297 7.35199 8.90180 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.039132 B = 0.004923 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.353386 B = 5686.435592 C = 6012.470758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.260 1.260 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.039 3.961 10 C -0.066 4.066 11 C -0.083 4.083 12 C -0.143 4.143 13 C -0.115 4.115 14 C -0.130 4.130 15 C -0.072 4.072 16 C -0.083 4.083 17 C -0.127 4.127 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.137 4.137 21 H 0.264 0.736 22 H -0.014 1.014 23 H -0.011 1.011 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.119 0.881 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -18.436 -3.349 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.002 3.998 10 C -0.104 4.104 11 C -0.083 4.083 12 C -0.161 4.161 13 C -0.133 4.133 14 C -0.148 4.148 15 C -0.072 4.072 16 C -0.101 4.101 17 C -0.164 4.164 18 C -0.168 4.168 19 C -0.173 4.173 20 C -0.155 4.155 21 H 0.073 0.927 22 H 0.005 0.995 23 H 0.007 0.993 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.137 0.863 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.700 -18.333 -3.353 18.650 hybrid contribution 0.232 1.464 0.073 1.484 sum -0.469 -16.869 -3.281 17.191 Atomic orbital electron populations 1.70122 1.07957 1.27793 1.51571 1.26020 0.95762 1.03503 0.94528 0.85350 0.79080 0.78449 0.77868 1.18428 1.20265 1.20223 1.21738 0.93636 0.92192 1.50759 0.91931 1.18890 0.93945 0.92440 0.94547 1.20565 0.97315 0.91137 1.01366 1.20227 0.98184 0.95706 0.94137 1.21209 1.00754 0.96829 0.97327 1.21381 0.97707 0.94942 0.99282 1.21162 1.01286 1.01031 0.91327 1.19961 0.96952 0.94199 0.96046 1.21645 0.97841 0.96778 0.93866 1.23067 0.98657 0.93286 1.01413 1.22843 0.97179 0.96810 0.99972 1.23018 0.94485 0.98365 1.01448 1.21059 1.00866 0.96363 0.97234 0.92713 0.99523 0.99308 0.91925 0.92203 0.86344 0.83593 0.83670 0.89084 0.90804 0.89173 0.90066 0.89457 0.90004 0.91844 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.47 13.29 21.45 0.28 -58.18 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.55 -32.11 9.11 25.60 0.23 -31.87 16 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.04 2.17 4.95 29.85 0.15 2.32 16 10 C -0.07 -2.97 5.28 29.85 0.16 -2.81 16 11 C -0.08 -3.25 5.13 -19.87 -0.10 -3.36 16 12 C -0.14 -5.01 9.70 22.27 0.22 -4.79 16 13 C -0.12 -3.26 10.05 22.27 0.22 -3.04 16 14 C -0.13 -3.43 8.53 22.27 0.19 -3.24 16 15 C -0.07 -2.10 5.29 -19.87 -0.11 -2.21 16 16 C -0.08 -1.92 3.97 -11.01 -0.04 -1.97 16 17 C -0.13 -2.21 7.48 31.21 0.23 -1.98 16 18 C -0.13 -2.01 8.09 31.21 0.25 -1.76 16 19 C -0.14 -2.77 7.54 31.12 0.23 -2.54 16 20 C -0.14 -4.94 9.36 22.27 0.21 -4.73 16 21 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 22 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 23 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 24 H 0.06 2.68 8.09 -2.38 -0.02 2.66 16 25 H 0.06 2.58 8.08 -2.39 -0.02 2.56 16 26 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 27 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 28 H 0.15 2.87 6.73 -2.91 -0.02 2.85 16 29 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.46 6.41 -2.39 -0.02 1.44 16 32 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.68 7.62 -2.39 -0.02 1.66 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.11 3.98 8.05 -2.91 -0.02 3.96 16 Total: -1.00 -67.06 298.18 5.65 -61.41 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.03 Total: 11.22 kcal Atomic # 6 Polarization: -63.84 SS G_CDS: 2.31 Total: -61.53 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.28 Total: -58.18 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -67.06 5.65 -61.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260128442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.483 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds