Wall clock time and date at job start Sun Mar 29 2020 21:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39874 * 125.46293 * 2 1 4 4 C 1.30250 * 110.08386 * 179.97438 * 3 2 1 5 5 C 1.45922 * 107.78370 * 0.26777 * 4 3 2 6 6 C 1.39953 * 134.02438 * 180.51518 * 5 4 3 7 7 C 1.36457 * 119.63625 * 179.60258 * 6 5 4 8 8 C 1.38963 * 120.62801 * 359.65225 * 7 6 5 9 9 C 1.36586 * 120.82143 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.08027 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47215 * 92.64417 * 10 9 8 12 12 C 1.50696 * 109.47262 * 174.73950 * 11 10 9 13 13 H 1.07995 * 120.00236 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00053 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99794 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47130 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47300 * 120.00043 * 16 14 12 19 19 H 1.48501 * 109.46686 * 239.99789 * 16 14 12 20 20 C 1.37043 * 125.45624 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47604 * 96.09341 * 1 2 3 22 22 H 1.09000 * 109.47650 * 216.09868 * 1 2 3 23 23 H 1.09001 * 109.46798 * 336.09939 * 1 2 3 24 24 H 1.07995 * 126.10701 * 180.02562 * 4 3 2 25 25 H 1.08000 * 120.17433 * 359.27351 * 6 5 4 26 26 H 1.08003 * 119.68747 * 179.67477 * 7 6 5 27 27 H 1.08008 * 119.59311 * 180.02562 * 8 7 6 28 28 H 1.09003 * 109.47696 * 212.64664 * 10 9 8 29 29 H 1.09000 * 109.47056 * 332.64892 * 10 9 8 30 30 H 1.08999 * 109.47098 * 294.74373 * 11 10 9 31 31 H 1.09004 * 109.46923 * 54.73985 * 11 10 9 32 32 H 0.96999 * 120.00130 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5323 0.7938 0.0005 5 6 3.5936 -0.6641 -0.0055 6 6 4.6398 -1.5937 0.0012 7 6 4.3564 -2.9285 0.0003 8 6 3.0397 -3.3727 -0.0001 9 6 2.0016 -2.4850 0.0000 10 6 0.5801 -2.9851 -0.0010 11 6 0.0762 -3.0925 1.4397 12 6 -1.3832 -3.4680 1.4347 13 1 -1.8997 -3.6157 0.4978 14 6 -2.0593 -3.6229 2.6264 15 7 -1.4302 -3.4435 3.7674 16 14 -3.8681 -4.0890 2.6203 17 1 -4.3378 -4.2319 1.2188 18 1 -4.0500 -5.3765 3.3376 19 1 -4.6548 -3.0285 3.2998 20 6 2.2599 -1.1163 0.0005 21 1 -0.3634 -0.1091 -1.0218 22 1 -0.3634 -0.8303 0.6055 23 1 -0.3633 0.9396 0.4164 24 1 4.3774 1.4663 0.0011 25 1 5.6657 -1.2563 0.0018 26 1 5.1631 -3.6466 0.0002 27 1 2.8345 -4.4331 -0.0004 28 1 -0.0497 -2.2892 -0.5553 29 1 0.5406 -3.9665 -0.4738 30 1 0.6462 -3.8568 1.9679 31 1 0.2029 -2.1331 1.9413 32 1 -1.9057 -3.5529 4.6057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260211482.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:58 Heat of formation + Delta-G solvation = 74.163739 kcal Electronic energy + Delta-G solvation = -15498.850533 eV Core-core repulsion = 13039.235743 eV Total energy + Delta-G solvation = -2459.614790 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95737 -37.09425 -34.67799 -32.81780 -31.34541 -29.47293 -29.08629 -26.20293 -24.76645 -22.44278 -21.72638 -21.10442 -19.53447 -16.66818 -16.54657 -15.94611 -15.11419 -14.95137 -14.50547 -14.12272 -13.81170 -13.05075 -12.79502 -12.61664 -12.37103 -11.95031 -11.62213 -11.31837 -11.21457 -10.95259 -10.75253 -10.58546 -10.37754 -9.92635 -9.82008 -9.34930 -9.13503 -8.43128 -8.24837 -7.33778 -6.06678 -4.11262 1.33013 1.90184 2.77861 2.83545 3.26197 3.34447 3.37601 4.16471 4.40086 4.80318 4.88575 5.14412 5.28535 5.31447 5.54220 5.65280 5.68918 5.73897 5.89245 6.09828 6.18845 6.24324 6.34097 6.56081 6.76719 6.82969 6.90929 6.99984 7.19554 7.44617 7.60703 7.70614 7.92663 7.96653 8.31385 8.96523 9.53983 11.03826 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033226 B = 0.007171 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.518706 B = 3903.429849 C = 4398.026522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.396 5.396 3 N -0.260 5.260 4 C 0.058 3.942 5 C -0.186 4.186 6 C -0.063 4.063 7 C -0.153 4.153 8 C -0.085 4.085 9 C -0.075 4.075 10 C -0.084 4.084 11 C 0.029 3.971 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.059 3.941 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.134 3.866 21 H 0.064 0.936 22 H 0.115 0.885 23 H 0.082 0.918 24 H 0.191 0.809 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.020 0.980 31 H 0.015 0.985 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.271 4.151 -7.760 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.184 5.184 3 N -0.073 5.073 4 C -0.138 4.138 5 C -0.194 4.194 6 C -0.083 4.083 7 C -0.173 4.173 8 C -0.106 4.106 9 C -0.079 4.079 10 C -0.122 4.122 11 C -0.008 4.008 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C 0.019 3.981 21 H 0.083 0.917 22 H 0.133 0.867 23 H 0.100 0.900 24 H 0.208 0.792 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.144 0.856 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.199 5.158 -7.572 12.295 hybrid contribution -0.501 -0.880 0.224 1.037 sum 7.697 4.278 -7.348 11.469 Atomic orbital electron populations 1.22222 0.73566 1.05783 1.03164 1.48143 1.06038 1.00792 1.63410 1.76480 1.02709 1.09834 1.18257 1.24903 0.94586 0.93101 1.01256 1.19884 0.93168 0.93213 1.13110 1.20147 0.97117 0.92070 0.99016 1.20584 0.96476 0.95260 1.04981 1.20620 0.91662 0.99350 0.98940 1.19148 0.98034 0.88777 1.01911 1.20936 0.89243 1.00130 1.01852 1.19123 0.95649 0.97331 0.88659 1.21270 0.95140 1.47574 0.92409 0.92455 1.25030 0.98275 0.95334 0.95636 1.69982 1.36327 1.49366 0.97319 0.86557 0.85251 0.78200 0.78143 1.19669 1.20947 1.20996 1.18693 0.90301 0.89278 0.99834 0.91703 0.86663 0.89972 0.79246 0.86182 0.86195 0.85602 0.92242 0.91805 0.96172 0.96658 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 9.92 59.85 0.59 2.18 16 2 N -0.40 -7.42 4.05 -65.47 -0.27 -7.68 16 3 N -0.26 -4.56 12.40 31.87 0.40 -4.17 16 4 C 0.06 0.87 12.28 -15.15 -0.19 0.69 16 5 C -0.19 -3.10 6.37 -105.20 -0.67 -3.77 16 6 C -0.06 -0.90 10.07 -39.58 -0.40 -1.30 16 7 C -0.15 -2.20 9.97 -39.96 -0.40 -2.60 16 8 C -0.08 -1.41 9.59 -39.91 -0.38 -1.79 16 9 C -0.08 -1.42 5.12 -104.83 -0.54 -1.96 16 10 C -0.08 -1.72 4.58 -27.88 -0.13 -1.85 16 11 C 0.03 0.74 4.22 -27.88 -0.12 0.62 16 12 C -0.53 -14.25 9.11 -34.44 -0.31 -14.57 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 16 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 C 0.13 2.55 6.79 -84.17 -0.57 1.98 16 21 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 22 H 0.12 2.25 4.57 -51.93 -0.24 2.01 16 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.19 1.95 8.06 -52.49 -0.42 1.52 16 25 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 26 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 28 H 0.06 1.17 5.84 -51.93 -0.30 0.86 16 29 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.02 0.41 7.07 -51.93 -0.37 0.05 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 272.26 15.07 4.10 4.10 Total: -1.00 -31.36 272.26 -7.08 -38.44 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -3.82 Total: -0.35 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -3.21 Total: -20.81 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.87 Total: -37.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.36 -7.08 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211482.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.605 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds