Wall clock time and date at job start Sun Mar 29 2020 21:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39874 * 125.46293 * 2 1 4 4 C 1.30250 * 110.08386 * 179.97438 * 3 2 1 5 5 C 1.45922 * 107.78370 * 0.26777 * 4 3 2 6 6 C 1.39953 * 134.02438 * 180.51518 * 5 4 3 7 7 C 1.36457 * 119.63625 * 179.60258 * 6 5 4 8 8 C 1.38963 * 120.62801 * 359.65225 * 7 6 5 9 9 C 1.36586 * 120.82143 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.08027 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.47215 * 92.64417 * 10 9 8 12 12 C 1.50696 * 109.47262 * 174.73950 * 11 10 9 13 13 H 1.07995 * 120.00236 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00053 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99794 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00115 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47130 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47300 * 120.00043 * 16 14 12 19 19 H 1.48501 * 109.46686 * 239.99789 * 16 14 12 20 20 C 1.37043 * 125.45624 * 179.97438 * 2 1 3 21 21 H 1.08998 * 109.47604 * 96.09341 * 1 2 3 22 22 H 1.09000 * 109.47650 * 216.09868 * 1 2 3 23 23 H 1.09001 * 109.46798 * 336.09939 * 1 2 3 24 24 H 1.07995 * 126.10701 * 180.02562 * 4 3 2 25 25 H 1.08000 * 120.17433 * 359.27351 * 6 5 4 26 26 H 1.08003 * 119.68747 * 179.67477 * 7 6 5 27 27 H 1.08008 * 119.59311 * 180.02562 * 8 7 6 28 28 H 1.09003 * 109.47696 * 212.64664 * 10 9 8 29 29 H 1.09000 * 109.47056 * 332.64892 * 10 9 8 30 30 H 1.08999 * 109.47098 * 294.74373 * 11 10 9 31 31 H 1.09004 * 109.46923 * 54.73985 * 11 10 9 32 32 H 0.96999 * 120.00130 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2765 1.1393 0.0000 4 6 3.5323 0.7938 0.0005 5 6 3.5936 -0.6641 -0.0055 6 6 4.6398 -1.5937 0.0012 7 6 4.3564 -2.9285 0.0003 8 6 3.0397 -3.3727 -0.0001 9 6 2.0016 -2.4850 0.0000 10 6 0.5801 -2.9851 -0.0010 11 6 0.0762 -3.0925 1.4397 12 6 -1.3832 -3.4680 1.4347 13 1 -1.8997 -3.6157 0.4978 14 6 -2.0593 -3.6229 2.6264 15 7 -1.4302 -3.4435 3.7674 16 14 -3.8681 -4.0890 2.6203 17 1 -4.3378 -4.2319 1.2188 18 1 -4.0500 -5.3765 3.3376 19 1 -4.6548 -3.0285 3.2998 20 6 2.2599 -1.1163 0.0005 21 1 -0.3634 -0.1091 -1.0218 22 1 -0.3634 -0.8303 0.6055 23 1 -0.3633 0.9396 0.4164 24 1 4.3774 1.4663 0.0011 25 1 5.6657 -1.2563 0.0018 26 1 5.1631 -3.6466 0.0002 27 1 2.8345 -4.4331 -0.0004 28 1 -0.0497 -2.2892 -0.5553 29 1 0.5406 -3.9665 -0.4738 30 1 0.6462 -3.8568 1.9679 31 1 0.2029 -2.1331 1.9413 32 1 -1.9057 -3.5529 4.6057 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260211482.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:58 Heat of formation + Delta-G solvation = 55.650415 kcal Electronic energy + Delta-G solvation = -15499.653331 eV Core-core repulsion = 13039.235743 eV Total energy + Delta-G solvation = -2460.417588 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.21674 -38.38090 -36.30101 -34.61965 -32.88540 -30.75063 -30.65128 -27.74174 -26.42235 -23.96173 -22.97456 -22.73246 -20.89349 -18.57664 -17.90407 -17.32680 -16.60730 -16.38508 -16.20700 -15.51372 -15.08187 -14.65528 -14.19292 -14.17013 -13.88183 -13.41065 -13.29765 -12.93451 -12.79035 -12.58061 -12.37784 -11.97633 -11.78340 -11.72786 -11.57088 -11.12450 -10.77681 -10.59031 -9.53515 -8.64475 -8.20916 -6.33981 0.08587 0.65881 1.38976 1.39801 1.51814 1.52672 1.61822 2.39169 2.92502 3.11712 3.58102 3.73992 3.86071 4.09155 4.31993 4.35161 4.45076 4.46349 4.61812 4.69649 4.79296 4.85300 4.98583 5.03538 5.22221 5.47900 5.49388 5.63706 5.64645 5.77596 5.82798 6.01046 6.16173 6.20038 6.71593 6.83323 7.36251 8.89964 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033226 B = 0.007171 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.518706 B = 3903.429849 C = 4398.026522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.417 5.417 3 N -0.289 5.289 4 C 0.078 3.922 5 C -0.203 4.203 6 C -0.047 4.047 7 C -0.157 4.157 8 C -0.085 4.085 9 C -0.114 4.114 10 C -0.068 4.068 11 C 0.044 3.956 12 C -0.539 4.539 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.933 5.933 16 Si 0.963 3.037 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.280 1.280 20 C 0.105 3.895 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.091 0.909 24 H 0.240 0.760 25 H 0.165 0.835 26 H 0.158 0.842 27 H 0.135 0.865 28 H 0.060 0.940 29 H 0.068 0.932 30 H -0.012 1.012 31 H -0.016 1.016 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.750 4.280 -8.790 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.206 5.206 3 N -0.101 5.101 4 C -0.119 4.119 5 C -0.211 4.211 6 C -0.067 4.067 7 C -0.176 4.176 8 C -0.106 4.106 9 C -0.118 4.118 10 C -0.105 4.105 11 C 0.007 3.993 12 C -0.577 4.577 13 H 0.083 0.917 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.788 3.212 17 H -0.183 1.183 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.010 4.010 21 H 0.098 0.902 22 H 0.102 0.898 23 H 0.110 0.890 24 H 0.256 0.744 25 H 0.183 0.817 26 H 0.175 0.825 27 H 0.152 0.848 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.007 0.993 31 H 0.003 0.997 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.676 5.285 -8.621 13.996 hybrid contribution -0.805 -0.912 0.546 1.333 sum 8.871 4.373 -8.075 12.768 Atomic orbital electron populations 1.22093 0.73842 1.04921 1.03511 1.48271 1.06323 1.01214 1.64763 1.76449 1.03810 1.09811 1.20070 1.25739 0.94939 0.93100 0.98118 1.20350 0.92791 0.94484 1.13469 1.20689 0.98582 0.91493 0.95928 1.21001 0.96191 0.96381 1.04008 1.20943 0.92535 0.99575 0.97497 1.19093 0.97433 0.89629 1.05625 1.20631 0.90946 1.00551 0.98403 1.18883 0.94777 0.94341 0.91287 1.21683 0.96248 1.46985 0.92778 0.91747 1.25965 1.03223 0.95202 0.95183 1.70124 1.38417 1.50695 0.98061 0.85424 0.79246 0.77818 0.78735 1.18276 1.20507 1.20557 1.19050 0.91901 0.89390 1.00630 0.90179 0.89805 0.88985 0.74433 0.81729 0.82455 0.84761 0.92098 0.91295 0.99345 0.99738 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.47 9.92 127.77 1.27 4.73 16 2 N -0.42 -15.90 4.05 -361.04 -1.46 -17.36 16 3 N -0.29 -9.92 12.40 -53.09 -0.66 -10.58 16 4 C 0.08 2.13 12.28 86.92 1.07 3.20 16 5 C -0.20 -6.34 6.37 -20.24 -0.13 -6.47 16 6 C -0.05 -1.15 10.07 22.27 0.22 -0.93 16 7 C -0.16 -3.99 9.97 22.03 0.22 -3.77 16 8 C -0.08 -2.74 9.59 22.06 0.21 -2.53 16 9 C -0.11 -4.40 5.12 -20.00 -0.10 -4.50 16 10 C -0.07 -2.88 4.58 29.85 0.14 -2.75 16 11 C 0.04 2.34 4.22 29.85 0.13 2.46 16 12 C -0.54 -30.10 9.11 25.60 0.23 -29.86 16 13 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 14 C 0.00 0.13 5.46 84.66 0.46 0.59 16 15 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 16 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 C 0.10 4.01 6.79 39.21 0.27 4.28 16 21 H 0.08 2.49 8.09 -2.39 -0.02 2.47 16 22 H 0.08 3.50 4.57 -2.39 -0.01 3.49 16 23 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 24 H 0.24 3.78 8.06 -2.91 -0.02 3.75 16 25 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 26 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 27 H 0.13 3.95 8.06 -2.91 -0.02 3.93 16 28 H 0.06 2.50 5.84 -2.39 -0.01 2.49 16 29 H 0.07 2.75 8.06 -2.39 -0.02 2.73 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H -0.02 -0.92 7.07 -2.38 -0.02 -0.94 16 32 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -70.35 272.26 5.29 -65.06 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.11 Total: 9.26 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 3.98 Total: -35.55 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.84 Total: -84.57 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -70.35 5.29 -65.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260211482.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.710 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds