Wall clock time and date at job start Sun Mar 29 2020 21:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.50698 * 109.47462 * 180.02562 * 9 7 2 11 11 C 1.38262 * 119.99506 * 269.72884 * 10 9 7 12 12 C 1.38216 * 119.99293 * 179.74350 * 11 10 9 13 13 C 1.38252 * 120.00548 * 0.55205 * 12 11 10 14 14 C 1.38219 * 119.99614 * 359.70214 * 13 12 11 15 15 C 1.50699 * 120.00062 * 180.02562 * 14 13 12 16 16 C 1.54269 * 110.03364 * 57.92844 * 15 14 13 17 17 C 1.54955 * 104.16150 * 217.13718 * 16 15 14 18 18 C 1.54891 * 102.77662 * 37.88790 * 17 16 15 19 19 C 1.53868 * 110.03334 * 300.71277 * 15 14 13 20 20 C 1.38213 * 120.00211 * 90.00171 * 10 9 7 21 21 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 23 23 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 24 24 H 1.07996 * 120.00484 * 359.97438 * 11 10 9 25 25 H 1.08005 * 119.99470 * 180.27356 * 12 11 10 26 26 H 1.07995 * 120.00859 * 179.72361 * 13 12 11 27 27 H 1.08999 * 110.01721 * 179.31935 * 15 14 13 28 28 H 1.08998 * 110.48413 * 335.78742 * 16 15 14 29 29 H 1.09006 * 110.48619 * 98.42335 * 16 15 14 30 30 H 1.09004 * 110.71996 * 279.57331 * 17 16 15 31 31 H 1.09000 * 110.92676 * 156.29434 * 17 16 15 32 32 H 1.09005 * 110.48009 * 203.40453 * 18 17 16 33 33 H 1.08996 * 110.59564 * 80.82136 * 18 17 16 34 34 H 1.09002 * 110.03450 * 238.57073 * 19 15 14 35 35 H 1.08999 * 110.03381 * 359.94699 * 19 15 14 36 36 H 1.07999 * 119.99655 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0138 -2.6148 -0.0182 11 6 4.2546 -3.2680 1.1763 12 6 4.7103 -4.5729 1.1707 13 6 4.9362 -5.2211 -0.0293 14 6 4.7005 -4.5663 -1.2235 15 6 4.9461 -5.2730 -2.5317 16 6 4.0985 -6.5599 -2.6044 17 6 5.0157 -7.5776 -3.3283 18 6 6.4153 -7.2468 -2.7531 19 6 6.4186 -5.7094 -2.6266 20 6 4.2392 -3.2630 -1.2180 21 1 -0.4850 0.8400 0.0004 22 1 3.8711 -0.6780 -0.9023 23 1 3.8785 -0.6824 0.8776 24 1 4.0831 -2.7599 2.1138 25 1 4.8942 -5.0846 2.1039 26 1 5.2965 -6.2392 -0.0338 27 1 4.6974 -4.6146 -3.3639 28 1 3.8536 -6.9125 -1.6025 29 1 3.1900 -6.3862 -3.1813 30 1 4.9935 -7.4181 -4.4064 31 1 4.7301 -8.6010 -3.0848 32 1 7.1967 -7.5749 -3.4387 33 1 6.5475 -7.7104 -1.7756 34 1 6.8843 -5.2634 -3.5054 35 1 6.9558 -5.4092 -1.7270 36 1 4.0557 -2.7511 -2.1511 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260591504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:19 Heat of formation + Delta-G solvation = -8.036523 kcal Electronic energy + Delta-G solvation = -15427.003868 eV Core-core repulsion = 13067.364951 eV Total energy + Delta-G solvation = -2359.638917 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.43791 -37.28697 -33.39837 -31.61762 -31.04630 -28.63156 -27.80559 -26.97865 -23.05872 -21.76940 -20.91942 -20.53634 -18.64136 -16.76048 -16.31790 -15.62530 -14.99104 -14.47229 -14.27350 -13.87723 -13.34763 -12.90850 -12.76672 -12.40641 -12.08282 -11.67639 -11.52588 -11.28871 -11.10600 -11.03649 -10.96168 -10.71655 -10.63532 -10.42050 -10.11547 -9.98989 -9.81192 -9.35902 -8.57793 -8.12532 -7.76401 -6.06852 -4.05772 2.00803 2.11049 3.28728 3.36448 3.39578 4.37761 4.41916 4.65875 4.75985 4.79892 5.23791 5.29280 5.43772 5.47128 5.58326 5.62823 5.67123 5.67747 5.73244 5.89225 5.90697 6.00889 6.05631 6.15580 6.27319 6.29469 6.31730 6.46136 6.61346 6.73097 6.98596 7.03980 7.11770 7.21253 7.63446 7.64656 7.75503 8.50762 8.98754 9.53536 11.06209 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.039199 B = 0.005700 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.138112 B = 4911.054996 C = 5083.686101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.265 1.265 6 H -0.286 1.286 7 C -0.512 4.512 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.027 4.027 11 C -0.127 4.127 12 C -0.122 4.122 13 C -0.141 4.141 14 C -0.079 4.079 15 C -0.051 4.051 16 C -0.117 4.117 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.119 4.119 21 H 0.264 0.736 22 H 0.027 0.973 23 H 0.023 0.977 24 H 0.116 0.884 25 H 0.111 0.889 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.318 -12.109 -4.138 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.212 1.212 7 C -0.550 4.550 8 H 0.091 0.909 9 C -0.023 4.023 10 C -0.027 4.027 11 C -0.145 4.145 12 C -0.140 4.140 13 C -0.159 4.159 14 C -0.079 4.079 15 C -0.069 4.069 16 C -0.155 4.155 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.137 4.137 21 H 0.074 0.926 22 H 0.045 0.955 23 H 0.041 0.959 24 H 0.134 0.866 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.158 -11.982 -4.143 17.565 hybrid contribution 0.191 0.961 0.094 0.984 sum 12.349 -11.021 -4.048 17.040 Atomic orbital electron populations 1.69903 1.06258 1.26948 1.50807 1.24998 0.94734 0.99005 0.94519 0.86804 0.80404 0.83672 0.78637 1.20163 1.18944 1.21236 1.20936 0.88282 0.94650 1.51105 0.90854 1.18814 0.97461 0.88821 0.97244 1.20253 0.92484 0.97803 0.92201 1.21043 1.00608 0.94733 0.98142 1.20992 1.00598 0.95134 0.97270 1.20661 1.03884 0.99276 0.92100 1.19713 0.99821 0.94263 0.94067 1.20731 0.94831 0.96308 0.95072 1.22507 0.97839 0.94101 1.01007 1.22520 0.95203 0.98795 0.99776 1.22364 0.97057 0.96051 1.00660 1.22247 0.95984 0.95301 1.01903 1.20949 1.00585 0.94075 0.98105 0.92619 0.95504 0.95908 0.86589 0.87131 0.87276 0.90573 0.91100 0.91592 0.91707 0.91851 0.92083 0.91814 0.92012 0.91390 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.51 -14.74 9.65 -34.44 -0.33 -15.07 16 8 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 9 C 0.01 0.33 4.17 -29.03 -0.12 0.21 16 10 C -0.03 -0.59 5.07 -104.62 -0.53 -1.12 16 11 C -0.13 -2.48 9.70 -39.58 -0.38 -2.87 16 12 C -0.12 -2.04 10.05 -39.58 -0.40 -2.44 16 13 C -0.14 -2.23 8.11 -39.58 -0.32 -2.55 16 14 C -0.08 -1.30 4.69 -104.62 -0.49 -1.79 16 15 C -0.05 -0.69 3.13 -90.66 -0.28 -0.97 16 16 C -0.12 -1.43 6.27 -25.04 -0.16 -1.59 16 17 C -0.13 -1.25 6.91 -24.70 -0.17 -1.42 16 18 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 19 C -0.12 -1.34 6.24 -25.62 -0.16 -1.50 16 20 C -0.12 -2.33 9.33 -39.58 -0.37 -2.70 16 21 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 22 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 23 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 24 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 25 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 26 H 0.11 1.47 7.78 -52.49 -0.41 1.06 16 27 H 0.08 1.03 7.91 -51.93 -0.41 0.62 16 28 H 0.07 0.91 6.91 -51.93 -0.36 0.55 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.83 7.28 -51.93 -0.38 0.45 16 36 H 0.12 2.21 7.96 -52.49 -0.42 1.79 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -30.34 291.55 -9.19 -39.53 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.70 Total: -0.48 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: -3.99 Total: -33.29 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 0.77 Total: -27.05 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.34 -9.19 -39.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260591504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.495 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds