Wall clock time and date at job start Sun Mar 29 2020 21:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 N 1.39868 * 125.45967 * 90.02254 * 3 2 1 5 5 C 1.30248 * 110.08724 * 180.02562 * 4 3 2 6 6 C 1.45936 * 107.78295 * 0.02562 * 5 4 3 7 7 C 1.39938 * 134.03954 * 180.02562 * 6 5 4 8 8 C 1.36457 * 119.64355 * 179.97438 * 7 6 5 9 9 C 1.50699 * 119.68752 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47279 * 90.00285 * 9 8 7 11 11 H 1.08000 * 120.00166 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00293 * 180.02562 * 10 9 8 13 13 N 1.31521 * 119.99700 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00165 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46927 * 89.99855 * 14 12 10 16 16 H 1.48497 * 109.46896 * 209.99792 * 14 12 10 17 17 H 1.48493 * 109.46934 * 329.99696 * 14 12 10 18 18 C 1.38968 * 120.62475 * 359.97438 * 8 7 6 19 19 C 1.36581 * 120.81778 * 0.04307 * 18 8 7 20 20 C 1.37038 * 125.46037 * 269.72385 * 3 2 1 21 21 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 22 22 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 25 25 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 26 26 H 1.07995 * 126.11011 * 180.02562 * 5 4 3 27 27 H 1.08005 * 120.17518 * 359.97438 * 7 6 5 28 28 H 1.09003 * 109.47024 * 210.00211 * 9 8 7 29 29 H 1.08996 * 109.47024 * 329.99792 * 9 8 7 30 30 H 0.96994 * 119.99906 * 180.02562 * 13 12 10 31 31 H 1.08006 * 119.58923 * 180.02562 * 18 8 7 32 32 H 1.08002 * 120.08117 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.2893 2.1461 1.1393 5 6 2.7073 3.3304 0.7940 6 6 2.7263 3.3888 -0.6641 7 6 3.0742 4.3752 -1.5937 8 6 2.9788 4.1084 -2.9285 9 6 3.3537 5.1697 -3.9305 10 6 4.8180 5.0494 -4.2655 11 1 5.4174 4.2815 -3.7992 12 6 5.3930 5.9203 -5.1665 13 7 4.6632 6.8559 -5.7341 14 14 7.2083 5.7716 -5.5813 15 1 7.3784 4.8551 -6.7372 16 1 7.7482 7.1109 -5.9277 17 1 7.9412 5.2307 -4.4085 18 6 2.5401 2.8668 -3.3727 19 6 2.1945 1.8881 -2.4849 20 6 2.2885 2.1290 -1.1162 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 2.9895 4.1268 1.4665 27 1 3.4164 5.3425 -1.2564 28 1 2.7618 5.0394 -4.8365 29 1 3.1576 6.1547 -3.5070 30 1 5.0676 7.4683 -6.3682 31 1 2.4714 2.6735 -4.4331 32 1 1.8547 0.9276 -2.8432 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:43 Heat of formation + Delta-G solvation = 73.146190 kcal Electronic energy + Delta-G solvation = -15082.151222 eV Core-core repulsion = 12622.492308 eV Total energy + Delta-G solvation = -2459.658914 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81550 -37.12114 -34.29395 -33.15067 -31.12229 -29.82046 -28.97952 -26.59310 -23.75975 -23.08572 -22.28111 -20.27327 -20.05352 -16.86749 -16.31685 -16.00751 -14.95625 -14.72599 -14.41998 -14.26670 -13.86185 -13.15890 -12.90239 -12.71817 -12.29641 -12.18317 -11.64334 -11.41812 -11.22475 -11.01808 -10.73837 -10.68757 -10.51167 -10.19289 -9.72784 -9.50643 -9.22345 -8.40933 -8.08444 -7.18448 -6.02265 -4.06341 1.45965 2.17512 2.65683 2.89671 3.31290 3.37766 3.42180 4.36649 4.53813 4.58477 4.95531 4.99865 5.06817 5.17973 5.29440 5.32159 5.43715 5.66284 5.71938 5.86808 5.98174 6.05980 6.21311 6.49353 6.55669 6.84893 7.09723 7.16071 7.34982 7.51140 7.64854 7.85783 7.93560 7.98144 8.34669 8.99307 9.57666 11.07011 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.045004 B = 0.005634 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.020330 B = 4969.069889 C = 5098.834678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.142 3.858 3 N -0.415 5.415 4 N -0.268 5.268 5 C 0.068 3.932 6 C -0.177 4.177 7 C -0.054 4.054 8 C -0.073 4.073 9 C 0.053 3.947 10 C -0.511 4.511 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.060 4.060 19 C -0.153 4.153 20 C 0.108 3.892 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.071 0.929 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.191 0.809 27 H 0.124 0.876 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.126 0.874 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 -10.533 9.248 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.020 3.980 3 N -0.205 5.205 4 N -0.080 5.080 5 C -0.129 4.129 6 C -0.184 4.184 7 C -0.074 4.074 8 C -0.074 4.074 9 C 0.016 3.984 10 C -0.550 4.550 11 H 0.075 0.925 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.080 4.080 19 C -0.175 4.175 20 C -0.004 4.004 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.089 0.911 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.207 0.793 27 H 0.142 0.858 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.144 0.856 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.752 -11.342 10.117 16.630 hybrid contribution 1.209 0.411 -0.964 1.600 sum -5.543 -10.931 9.152 15.296 Atomic orbital electron populations 1.22213 0.95195 1.02390 1.03091 1.21398 0.94560 0.78515 1.03514 1.48129 1.59290 1.11946 1.01162 1.76413 1.17511 1.04600 1.09509 1.24972 0.99374 0.95050 0.93539 1.19942 1.10289 0.95260 0.92948 1.20258 0.97794 0.97736 0.91635 1.20206 0.96068 0.96348 0.94812 1.18292 0.96566 0.91488 0.92069 1.21105 0.93846 1.15477 1.24535 0.92505 1.25004 0.98054 0.95223 0.96008 1.69957 1.35891 1.18359 1.29182 0.86564 0.85223 0.77330 0.78764 1.20639 1.21185 1.19824 1.20774 0.95553 0.92448 0.99249 1.19691 1.08483 1.00401 0.88875 1.18702 1.00540 0.91857 0.89314 0.91971 0.92018 0.91054 0.89626 0.89538 0.79261 0.85814 0.95393 0.95331 0.92878 0.85621 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.14 1.61 7.09 -4.04 -0.03 1.58 16 3 N -0.41 -6.52 3.65 -58.70 -0.21 -6.73 16 4 N -0.27 -4.37 12.40 31.87 0.40 -3.98 16 5 C 0.07 1.07 12.28 -15.14 -0.19 0.88 16 6 C -0.18 -3.23 6.37 -105.20 -0.67 -3.90 16 7 C -0.05 -1.06 9.68 -39.59 -0.38 -1.44 16 8 C -0.07 -1.56 5.03 -104.99 -0.53 -2.09 16 9 C 0.05 1.33 5.08 -29.04 -0.15 1.18 16 10 C -0.51 -14.13 9.09 -34.44 -0.31 -14.45 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 13 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 14 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 18 C -0.06 -1.13 9.60 -39.91 -0.38 -1.52 16 19 C -0.15 -2.57 9.97 -39.79 -0.40 -2.97 16 20 C 0.11 1.90 6.87 -84.17 -0.58 1.32 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 27 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 28 H 0.03 0.73 8.08 -51.93 -0.42 0.31 16 29 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 32 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 282.10 15.07 4.25 4.25 Total: -1.00 -31.17 282.10 -7.37 -38.54 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.18 Total: -1.86 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -3.33 Total: -21.15 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.92 Total: -36.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.17 -7.37 -38.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.682 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds