Wall clock time and date at job start Sun Mar 29 2020 21:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47157 * 300.00517 * 3 2 1 6 6 H 1.48502 * 109.47214 * 60.00025 * 3 2 1 7 7 C 1.37876 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 9 13 13 C 1.34237 * 125.03018 * 95.00407 * 12 11 10 14 14 C 1.46490 * 106.99771 * 180.02562 * 13 12 11 15 15 C 1.39625 * 134.03370 * 180.02562 * 14 13 12 16 16 C 1.36629 * 119.76536 * 179.97438 * 15 14 13 17 17 C 1.38833 * 120.52471 * 0.02562 * 16 15 14 18 18 C 1.37741 * 120.66881 * 0.02562 * 17 16 15 19 19 C 1.39130 * 119.78160 * 359.94801 * 18 17 16 20 20 N 1.36826 * 125.03953 * 274.69618 * 12 11 10 21 21 H 0.97008 * 125.05854 * 0.02562 * 20 12 11 22 22 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 24 24 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 25 25 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 26 26 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 27 27 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 28 28 H 1.08006 * 126.50590 * 359.97379 * 13 12 11 29 29 H 1.08001 * 120.11857 * 359.97438 * 15 14 13 30 30 H 1.07997 * 119.73571 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.66427 * 179.97438 * 17 16 15 32 32 H 1.08006 * 120.10977 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5150 -6.0260 -0.0018 13 6 2.9600 -6.6628 1.0929 14 6 3.9230 -7.6699 0.6407 15 6 4.7069 -8.6244 1.2917 16 6 5.5280 -9.4386 0.5640 17 6 5.5896 -9.3243 -0.8183 18 6 4.8257 -8.3888 -1.4807 19 6 3.9822 -7.5496 -0.7597 20 7 3.1093 -6.5472 -1.1186 21 1 2.9437 -6.2513 -2.0275 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8406 -3.5487 0.7808 26 1 0.8803 -4.9818 0.8885 27 1 0.8808 -4.9813 -0.8914 28 1 2.6649 -6.4690 2.1136 29 1 4.6644 -8.7187 2.3667 30 1 6.1344 -10.1765 1.0681 31 1 6.2438 -9.9748 -1.3798 32 1 4.8811 -8.3074 -2.5562 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308852221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:34 Heat of formation + Delta-G solvation = 48.811671 kcal Electronic energy + Delta-G solvation = -14640.719439 eV Core-core repulsion = 12180.005300 eV Total energy + Delta-G solvation = -2460.714138 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09312 -37.10329 -35.13797 -32.55679 -31.76436 -29.59103 -29.05680 -26.87719 -24.44791 -22.09909 -21.52335 -21.26845 -20.00310 -17.60272 -16.62477 -16.04276 -15.16314 -14.71091 -14.54491 -14.26679 -13.84021 -13.61412 -13.20116 -13.16737 -12.71401 -12.03287 -11.83689 -11.51727 -11.35187 -11.11976 -10.79551 -10.78077 -10.66615 -10.02329 -9.59769 -9.25971 -8.54558 -8.03912 -7.60189 -7.40633 -6.08819 -4.11094 1.22169 1.73361 2.86863 3.28265 3.30069 3.35726 3.41215 4.01541 4.39543 4.78453 4.92727 5.07450 5.23700 5.27409 5.37543 5.48497 5.52358 5.63702 5.79429 5.99797 6.02912 6.12719 6.16311 6.52599 6.67138 6.88327 6.97836 7.12669 7.30374 7.32791 7.68845 7.73282 8.03518 8.26696 8.49075 8.97991 9.54274 11.02258 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.052543 B = 0.004326 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.770187 B = 6470.462900 C = 6572.774851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.687 5.687 11 C 0.111 3.889 12 C 0.111 3.889 13 C -0.213 4.213 14 C -0.104 4.104 15 C -0.074 4.074 16 C -0.153 4.153 17 C -0.108 4.108 18 C -0.129 4.129 19 C 0.094 3.906 20 N -0.582 5.582 21 H 0.416 0.584 22 H 0.262 0.738 23 H 0.029 0.971 24 H -0.010 1.010 25 H 0.335 0.665 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.139 -16.760 -0.275 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.318 5.318 11 C -0.019 4.019 12 C 0.002 3.998 13 C -0.239 4.239 14 C -0.109 4.109 15 C -0.092 4.092 16 C -0.172 4.172 17 C -0.128 4.128 18 C -0.150 4.150 19 C -0.013 4.013 20 N -0.184 5.184 21 H 0.253 0.747 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.008 0.992 25 H 0.152 0.848 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.161 0.839 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.995 -16.542 -1.078 17.992 hybrid contribution -0.032 1.083 0.423 1.163 sum 6.963 -15.459 -0.655 16.968 Atomic orbital electron populations 1.69966 1.06092 1.26809 1.50827 1.24987 0.94892 0.99433 0.95224 0.86410 0.80076 0.83196 0.77554 1.19626 1.20969 1.21002 1.21196 0.93602 0.90091 1.50485 0.91849 1.19608 0.90549 0.87175 0.96014 1.60748 1.21137 1.00301 1.49605 1.20581 0.92270 0.87439 1.01644 1.20529 0.97294 0.96360 0.85604 1.21450 1.03675 1.00838 0.97925 1.19225 1.00357 0.99108 0.92230 1.20249 0.95350 0.94317 0.99333 1.20555 1.01388 1.01245 0.94049 1.20714 0.99334 0.98233 0.94478 1.20013 0.98648 0.97359 0.98945 1.18271 0.95546 0.93176 0.94351 1.41780 1.36639 1.30903 1.09043 0.74700 0.92885 0.95301 0.99211 0.84801 0.93226 0.90636 0.83878 0.86348 0.86451 0.86171 0.86515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.46 9.32 -34.44 -0.32 -14.78 16 8 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.19 4.93 5.44 -4.97 -0.03 4.91 16 10 N -0.69 -14.38 6.48 -116.33 -0.75 -15.14 16 11 C 0.11 1.90 6.20 -4.97 -0.03 1.87 16 12 C 0.11 1.75 6.60 -81.77 -0.54 1.22 16 13 C -0.21 -3.27 10.95 -37.67 -0.41 -3.68 16 14 C -0.10 -1.56 6.37 -105.14 -0.67 -2.23 16 15 C -0.07 -0.94 10.05 -39.65 -0.40 -1.34 16 16 C -0.15 -1.73 9.97 -39.94 -0.40 -2.13 16 17 C -0.11 -1.20 10.01 -39.54 -0.40 -1.60 16 18 C -0.13 -1.59 10.08 -39.43 -0.40 -1.99 16 19 C 0.09 1.37 7.28 -83.99 -0.61 0.76 16 20 N -0.58 -8.42 6.07 -6.95 -0.04 -8.47 16 21 H 0.42 5.23 8.96 -40.82 -0.37 4.86 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H -0.01 -0.27 8.14 -51.93 -0.42 -0.69 16 25 H 0.34 6.91 8.72 -39.29 -0.34 6.57 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.14 1.97 8.06 -52.48 -0.42 1.54 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -30.59 281.06 -9.20 -39.79 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.06 Total: 6.32 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -4.30 Total: -17.51 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.06 Total: -49.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.59 -9.20 -39.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308852221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.605 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds