Wall clock time and date at job start Sun Mar 29 2020 21:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47157 * 300.00517 * 3 2 1 6 6 H 1.48502 * 109.47214 * 60.00025 * 3 2 1 7 7 C 1.37876 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00116 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 9 13 13 C 1.34237 * 125.03018 * 95.00407 * 12 11 10 14 14 C 1.46490 * 106.99771 * 180.02562 * 13 12 11 15 15 C 1.39625 * 134.03370 * 180.02562 * 14 13 12 16 16 C 1.36629 * 119.76536 * 179.97438 * 15 14 13 17 17 C 1.38833 * 120.52471 * 0.02562 * 16 15 14 18 18 C 1.37741 * 120.66881 * 0.02562 * 17 16 15 19 19 C 1.39130 * 119.78160 * 359.94801 * 18 17 16 20 20 N 1.36826 * 125.03953 * 274.69618 * 12 11 10 21 21 H 0.97008 * 125.05854 * 0.02562 * 20 12 11 22 22 H 0.96998 * 120.00296 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 24 24 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 25 25 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 26 26 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 27 27 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 28 28 H 1.08006 * 126.50590 * 359.97379 * 13 12 11 29 29 H 1.08001 * 120.11857 * 359.97438 * 15 14 13 30 30 H 1.07997 * 119.73571 * 179.97438 * 16 15 14 31 31 H 1.08002 * 119.66427 * 179.97438 * 17 16 15 32 32 H 1.08006 * 120.10977 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 6 2.5150 -6.0260 -0.0018 13 6 2.9600 -6.6628 1.0929 14 6 3.9230 -7.6699 0.6407 15 6 4.7069 -8.6244 1.2917 16 6 5.5280 -9.4386 0.5640 17 6 5.5896 -9.3243 -0.8183 18 6 4.8257 -8.3888 -1.4807 19 6 3.9822 -7.5496 -0.7597 20 7 3.1093 -6.5472 -1.1186 21 1 2.9437 -6.2513 -2.0275 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8406 -3.5487 0.7808 26 1 0.8803 -4.9818 0.8885 27 1 0.8808 -4.9813 -0.8914 28 1 2.6649 -6.4690 2.1136 29 1 4.6644 -8.7187 2.3667 30 1 6.1344 -10.1765 1.0681 31 1 6.2438 -9.9748 -1.3798 32 1 4.8811 -8.3074 -2.5562 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308852221.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:34 Heat of formation + Delta-G solvation = 29.155018 kcal Electronic energy + Delta-G solvation = -14641.571815 eV Core-core repulsion = 12180.005300 eV Total energy + Delta-G solvation = -2461.566515 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.15766 -38.19176 -36.78754 -34.56678 -32.82865 -30.96328 -30.11925 -28.53738 -26.03533 -23.56983 -23.00672 -22.31751 -21.18272 -18.87263 -18.35968 -17.32390 -16.70960 -16.20083 -15.89701 -15.62290 -14.91302 -14.78293 -14.72975 -14.63969 -13.96828 -13.64917 -13.35293 -13.02867 -12.70842 -12.62113 -12.41101 -12.30486 -12.01213 -11.70823 -11.34375 -10.69296 -10.63774 -9.26503 -9.04593 -8.61102 -8.24553 -6.35724 0.22479 0.76651 1.40739 1.41252 1.55047 1.71193 2.22423 2.39405 3.04584 3.09019 3.54780 3.84759 3.90900 4.22140 4.26919 4.36179 4.50847 4.59128 4.60237 4.70741 5.01248 5.06920 5.08865 5.20875 5.23378 5.57670 5.60040 5.74353 5.86983 5.90547 5.98248 6.29094 6.35619 6.61747 6.67513 6.83836 7.35192 8.86814 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.052543 B = 0.004326 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.770187 B = 6470.462900 C = 6572.774851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.684 5.684 11 C 0.118 3.882 12 C 0.094 3.906 13 C -0.217 4.217 14 C -0.134 4.134 15 C -0.086 4.086 16 C -0.151 4.151 17 C -0.102 4.102 18 C -0.141 4.141 19 C 0.077 3.923 20 N -0.582 5.582 21 H 0.421 0.579 22 H 0.266 0.734 23 H 0.006 0.994 24 H -0.031 1.031 25 H 0.337 0.663 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.151 0.849 29 H 0.134 0.866 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.024 -17.742 -0.389 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.080 0.920 9 C 0.080 3.920 10 N -0.316 5.316 11 C -0.012 4.012 12 C -0.016 4.016 13 C -0.243 4.243 14 C -0.139 4.139 15 C -0.104 4.104 16 C -0.170 4.170 17 C -0.121 4.121 18 C -0.161 4.161 19 C -0.030 4.030 20 N -0.185 5.185 21 H 0.259 0.741 22 H 0.075 0.925 23 H 0.024 0.976 24 H -0.014 1.014 25 H 0.154 0.846 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.169 0.831 29 H 0.152 0.848 30 H 0.166 0.834 31 H 0.171 0.829 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.890 -17.549 -1.198 19.709 hybrid contribution -0.562 1.226 0.462 1.426 sum 8.328 -16.323 -0.736 18.339 Atomic orbital electron populations 1.70080 1.07694 1.28023 1.51427 1.25910 0.95784 1.03264 0.94524 0.85293 0.78838 0.78380 0.77831 1.18908 1.20327 1.20185 1.21539 0.93742 0.91446 1.50752 0.92001 1.19258 0.90560 0.88409 0.93818 1.60600 1.20434 1.00776 1.49744 1.20489 0.92645 0.86120 1.01933 1.20213 0.98146 0.96716 0.86498 1.21686 1.03542 1.00849 0.98199 1.19508 1.01379 1.00153 0.92868 1.20558 0.95330 0.94107 1.00447 1.20982 1.00675 1.00989 0.94365 1.21191 0.98580 0.97567 0.94776 1.20375 0.98397 0.97252 1.00118 1.18646 0.96052 0.93592 0.94733 1.41747 1.36703 1.31059 1.08986 0.74082 0.92526 0.97596 1.01371 0.84568 0.92758 0.90480 0.83105 0.84833 0.83441 0.82911 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -30.53 9.32 25.60 0.24 -30.29 16 8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.21 10.93 5.44 85.56 0.47 11.39 16 10 N -0.68 -29.30 6.48 -521.96 -3.38 -32.68 16 11 C 0.12 4.12 6.20 85.56 0.53 4.65 16 12 C 0.09 2.97 6.60 40.87 0.27 3.24 16 13 C -0.22 -6.64 10.95 23.51 0.26 -6.39 16 14 C -0.13 -3.93 6.37 -20.20 -0.13 -4.06 16 15 C -0.09 -2.04 10.05 22.23 0.22 -1.82 16 16 C -0.15 -2.93 9.97 22.04 0.22 -2.71 16 17 C -0.10 -1.93 10.01 22.29 0.22 -1.70 16 18 C -0.14 -3.18 10.08 22.37 0.23 -2.95 16 19 C 0.08 2.19 7.28 39.03 0.28 2.47 16 20 N -0.58 -16.82 6.07 -175.91 -1.07 -17.89 16 21 H 0.42 10.62 8.96 -92.70 -0.83 9.79 16 22 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 23 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 24 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 25 H 0.34 14.15 8.72 -89.70 -0.78 13.37 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 28 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 32 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -65.35 281.06 0.65 -64.70 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.48 Total: 22.62 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 3.27 Total: -27.49 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -4.16 Total: -106.02 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -65.35 0.65 -64.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308852221.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.857 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds