Wall clock time and date at job start Sun Mar 29 2020 21:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46602 * 2 1 4 4 C 1.36838 * 119.99623 * 264.85624 * 3 2 1 5 5 H 1.08002 * 120.00029 * 136.82261 * 4 3 2 6 6 C 1.38761 * 120.00348 * 316.82026 * 4 3 2 7 7 N 1.31628 * 119.99791 * 348.40092 * 6 4 3 8 8 Si 1.86793 * 120.00537 * 168.40170 * 6 4 3 9 9 H 1.48500 * 109.46784 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47605 * 119.99780 * 8 6 4 11 11 H 1.48508 * 109.47251 * 240.00338 * 8 6 4 12 12 C 1.39456 * 120.00264 * 84.85989 * 3 2 1 13 13 C 1.39583 * 119.91160 * 359.97438 * 12 3 2 14 14 C 1.36557 * 120.73383 * 180.02562 * 13 12 3 15 15 C 1.39185 * 120.16715 * 359.97438 * 14 13 12 16 16 N 1.37833 * 133.34865 * 180.02562 * 15 14 13 17 17 H 0.97002 * 125.05515 * 359.97438 * 16 15 14 18 18 C 1.36808 * 109.87922 * 180.26383 * 16 15 14 19 19 C 1.34236 * 109.94807 * 359.54531 * 18 16 15 20 20 C 1.40702 * 119.55578 * 0.02562 * 15 14 13 21 21 C 1.38481 * 119.90738 * 180.02562 * 12 3 2 22 22 H 1.08994 * 109.47018 * 60.00513 * 1 2 3 23 23 H 1.09002 * 109.46469 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47470 * 299.99749 * 1 2 3 25 25 H 1.08992 * 109.47449 * 239.99486 * 2 1 3 26 26 H 1.09003 * 109.47005 * 119.99289 * 2 1 3 27 27 H 0.97001 * 119.99987 * 179.97438 * 7 6 4 28 28 H 1.08000 * 119.63312 * 0.02562 * 13 12 3 29 29 H 1.08000 * 119.92162 * 179.97438 * 14 13 12 30 30 H 1.08002 * 125.02260 * 179.73282 * 18 16 15 31 31 H 1.08004 * 126.50329 * 180.16832 * 19 18 16 32 32 H 1.08007 * 120.28401 * 0.02562 * 21 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3464 1.9909 -1.1803 5 1 2.0429 3.0110 -1.3639 6 6 3.0691 1.2985 -2.1414 7 7 3.6340 0.1488 -1.8385 8 14 3.2403 1.9977 -3.8651 9 1 2.5173 3.2921 -3.9481 10 1 4.6773 2.2124 -4.1718 11 1 2.6618 1.0443 -4.8458 12 6 2.1486 2.0748 1.2028 13 6 1.8129 1.4513 2.4057 14 6 1.9336 2.1148 3.5931 15 6 2.3958 3.4275 3.6171 16 7 2.6194 4.3335 4.6314 17 1 2.4684 4.1627 5.5743 18 6 3.0798 5.5114 4.1099 19 6 3.1793 5.4134 2.7748 20 6 2.7369 4.0652 2.4102 21 6 2.6098 3.3806 1.2005 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 4.1389 -0.3354 -2.5105 28 1 1.4537 0.4328 2.3972 29 1 1.6697 1.6199 4.5161 30 1 3.3295 6.3893 4.6873 31 1 3.5168 6.1839 2.0974 32 1 2.8689 3.8650 0.2706 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335750631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:56 Heat of formation + Delta-G solvation = 68.828342 kcal Electronic energy + Delta-G solvation = -15593.408423 eV Core-core repulsion = 13133.562273 eV Total energy + Delta-G solvation = -2459.846150 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23079 -37.52212 -34.52704 -31.82489 -31.14598 -29.82160 -27.84681 -27.03809 -24.51213 -21.95369 -21.62647 -20.14344 -19.37794 -17.44119 -16.82872 -15.53126 -15.29281 -14.57231 -13.91202 -13.61747 -13.06573 -12.99265 -12.69161 -12.44456 -12.32381 -11.82653 -11.67646 -11.26976 -11.10664 -10.87221 -10.68837 -10.45131 -10.29349 -9.96643 -9.58626 -9.01078 -8.77661 -8.04237 -7.08329 -6.35361 -5.82564 -3.81558 2.06345 2.85115 3.22456 3.28034 3.32087 3.48545 3.86803 4.19347 4.90161 5.08106 5.21198 5.43992 5.63945 5.90648 6.10640 6.13367 6.29800 6.39888 6.40170 6.47687 6.62163 6.70170 6.88305 7.00336 7.10665 7.24547 7.40623 7.51920 7.59433 7.67139 7.77907 8.07087 8.28967 8.36268 8.87780 9.46299 9.89378 10.81113 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.008229 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.313988 B = 3401.911222 C = 4093.212386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.116 3.884 3 N -0.457 5.457 4 C -0.300 4.300 5 H 0.082 0.918 6 C 0.032 3.968 7 N -0.876 5.876 8 Si 0.916 3.084 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.207 3.793 13 C -0.180 4.180 14 C -0.091 4.091 15 C 0.001 3.999 16 N -0.605 5.605 17 H 0.402 0.598 18 C 0.039 3.961 19 C -0.225 4.225 20 C -0.049 4.049 21 C -0.187 4.187 22 H 0.052 0.948 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.104 0.896 26 H 0.043 0.957 27 H 0.265 0.735 28 H 0.114 0.886 29 H 0.101 0.899 30 H 0.155 0.845 31 H 0.133 0.867 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.787 3.915 7.984 9.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.008 4.008 3 N -0.148 5.148 4 C -0.429 4.429 5 H 0.099 0.901 6 C -0.171 4.171 7 N -0.513 5.513 8 Si 0.743 3.257 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.095 3.905 13 C -0.203 4.203 14 C -0.112 4.112 15 C -0.103 4.103 16 N -0.210 5.210 17 H 0.237 0.763 18 C -0.088 4.088 19 C -0.253 4.253 20 C -0.053 4.053 21 C -0.214 4.214 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.121 0.879 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.173 0.827 31 H 0.151 0.849 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.719 3.560 7.726 8.930 hybrid contribution 0.133 0.181 -0.383 0.444 sum -2.585 3.741 7.343 8.637 Atomic orbital electron populations 1.22240 0.98982 0.99792 1.01387 1.21344 0.91013 0.85380 1.03048 1.42222 1.60016 1.10792 1.01793 1.19292 1.31916 0.99499 0.92149 0.90093 1.25492 0.94671 0.96661 1.00324 1.69942 1.32069 1.15183 1.34110 0.86023 0.78062 0.79125 0.82460 1.19305 1.20792 1.20814 1.17992 0.94204 0.91971 0.86374 1.20127 1.09315 0.99739 0.91157 1.19261 1.03320 0.91449 0.97194 1.17920 1.11743 0.92941 0.87726 1.41487 1.60543 1.11429 1.07532 0.76331 1.21499 1.03166 0.89565 0.94571 1.21552 1.12557 0.97075 0.94097 1.18915 1.00798 0.93345 0.92265 1.19766 1.11433 0.94228 0.95953 0.92839 0.93663 0.93761 0.87861 0.93897 0.92504 0.86841 0.88098 0.82743 0.84899 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 10.13 37.16 0.38 -2.85 16 2 C 0.12 2.68 5.26 -4.04 -0.02 2.66 16 3 N -0.46 -11.60 2.61 -113.13 -0.30 -11.89 16 4 C -0.30 -8.01 8.29 -15.12 -0.13 -8.13 16 5 H 0.08 2.16 7.06 -52.49 -0.37 1.79 16 6 C 0.03 0.85 5.10 -17.45 -0.09 0.76 16 7 N -0.88 -23.99 11.36 55.49 0.63 -23.36 16 8 Si 0.92 20.51 29.57 -169.99 -5.03 15.48 16 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.21 5.00 6.50 -83.80 -0.54 4.45 16 13 C -0.18 -3.84 8.75 -39.69 -0.35 -4.18 16 14 C -0.09 -1.74 10.01 -39.84 -0.40 -2.14 16 15 C 0.00 0.03 7.28 -83.88 -0.61 -0.59 16 16 N -0.61 -9.35 6.07 -10.60 -0.06 -9.41 16 17 H 0.40 4.70 8.96 -40.82 -0.37 4.34 16 18 C 0.04 0.58 11.81 -16.74 -0.20 0.38 16 19 C -0.23 -4.04 11.08 -37.67 -0.42 -4.46 16 20 C -0.05 -1.05 6.37 -105.14 -0.67 -1.72 16 21 C -0.19 -4.48 9.33 -38.99 -0.36 -4.84 16 22 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16 25 H 0.10 2.61 5.65 -51.93 -0.29 2.32 16 26 H 0.04 0.95 6.47 -51.93 -0.34 0.61 16 27 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.11 2.25 6.03 -52.49 -0.32 1.93 16 29 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.13 2.13 8.06 -52.48 -0.42 1.71 16 32 H 0.12 2.92 6.56 -52.48 -0.34 2.57 16 LS Contribution 268.00 15.07 4.04 4.04 Total: -1.00 -29.72 268.00 -7.80 -37.52 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -3.67 Total: 8.28 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -3.41 Total: -20.66 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.27 Total: -44.66 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.72 -7.80 -37.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335750631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.350 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds