Wall clock time and date at job start Sun Mar 29 2020 21:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.46602 * 2 1 4 4 C 1.36838 * 119.99623 * 264.85624 * 3 2 1 5 5 H 1.08002 * 120.00029 * 136.82261 * 4 3 2 6 6 C 1.38761 * 120.00348 * 316.82026 * 4 3 2 7 7 N 1.31628 * 119.99791 * 348.40092 * 6 4 3 8 8 Si 1.86793 * 120.00537 * 168.40170 * 6 4 3 9 9 H 1.48500 * 109.46784 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47605 * 119.99780 * 8 6 4 11 11 H 1.48508 * 109.47251 * 240.00338 * 8 6 4 12 12 C 1.39456 * 120.00264 * 84.85989 * 3 2 1 13 13 C 1.39583 * 119.91160 * 359.97438 * 12 3 2 14 14 C 1.36557 * 120.73383 * 180.02562 * 13 12 3 15 15 C 1.39185 * 120.16715 * 359.97438 * 14 13 12 16 16 N 1.37833 * 133.34865 * 180.02562 * 15 14 13 17 17 H 0.97002 * 125.05515 * 359.97438 * 16 15 14 18 18 C 1.36808 * 109.87922 * 180.26383 * 16 15 14 19 19 C 1.34236 * 109.94807 * 359.54531 * 18 16 15 20 20 C 1.40702 * 119.55578 * 0.02562 * 15 14 13 21 21 C 1.38481 * 119.90738 * 180.02562 * 12 3 2 22 22 H 1.08994 * 109.47018 * 60.00513 * 1 2 3 23 23 H 1.09002 * 109.46469 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47470 * 299.99749 * 1 2 3 25 25 H 1.08992 * 109.47449 * 239.99486 * 2 1 3 26 26 H 1.09003 * 109.47005 * 119.99289 * 2 1 3 27 27 H 0.97001 * 119.99987 * 179.97438 * 7 6 4 28 28 H 1.08000 * 119.63312 * 0.02562 * 13 12 3 29 29 H 1.08000 * 119.92162 * 179.97438 * 14 13 12 30 30 H 1.08002 * 125.02260 * 179.73282 * 18 16 15 31 31 H 1.08004 * 126.50329 * 180.16832 * 19 18 16 32 32 H 1.08007 * 120.28401 * 0.02562 * 21 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3464 1.9909 -1.1803 5 1 2.0429 3.0110 -1.3639 6 6 3.0691 1.2985 -2.1414 7 7 3.6340 0.1488 -1.8385 8 14 3.2403 1.9977 -3.8651 9 1 2.5173 3.2921 -3.9481 10 1 4.6773 2.2124 -4.1718 11 1 2.6618 1.0443 -4.8458 12 6 2.1486 2.0748 1.2028 13 6 1.8129 1.4513 2.4057 14 6 1.9336 2.1148 3.5931 15 6 2.3958 3.4275 3.6171 16 7 2.6194 4.3335 4.6314 17 1 2.4684 4.1627 5.5743 18 6 3.0798 5.5114 4.1099 19 6 3.1793 5.4134 2.7748 20 6 2.7369 4.0652 2.4102 21 6 2.6098 3.3806 1.2005 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5137 0.8901 27 1 4.1389 -0.3354 -2.5105 28 1 1.4537 0.4328 2.3972 29 1 1.6697 1.6199 4.5161 30 1 3.3295 6.3893 4.6873 31 1 3.5168 6.1839 2.0974 32 1 2.8689 3.8650 0.2706 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335750631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:56 Heat of formation + Delta-G solvation = 51.703366 kcal Electronic energy + Delta-G solvation = -15594.151018 eV Core-core repulsion = 13133.562273 eV Total energy + Delta-G solvation = -2460.588745 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.69735 -39.23260 -36.20780 -33.73180 -32.71352 -31.44596 -29.35467 -28.74563 -26.35545 -23.65417 -23.23800 -21.58869 -20.97372 -19.14026 -18.46149 -17.40173 -16.81470 -16.35086 -15.65391 -15.10190 -14.62956 -14.55539 -14.38400 -14.14099 -13.83492 -13.45161 -13.19338 -12.98523 -12.88622 -12.54574 -12.44115 -12.18427 -12.07394 -11.69978 -11.28951 -10.83578 -10.40076 -9.76757 -8.56635 -8.29837 -7.63257 -5.82599 0.52823 1.17946 1.41257 1.45391 1.54354 2.09288 2.33013 2.59518 3.00246 3.33919 3.42142 4.13600 4.27397 4.38932 4.51422 4.68910 4.70822 4.77989 4.85388 4.98186 5.03199 5.10646 5.31597 5.37510 5.45632 5.50590 5.63869 5.70892 5.95986 5.99242 6.18174 6.30154 6.57551 6.94100 7.09278 7.59632 7.97156 8.83031 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030026 B = 0.008229 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.313988 B = 3401.911222 C = 4093.212386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.118 3.882 3 N -0.481 5.481 4 C -0.313 4.313 5 H 0.066 0.934 6 C -0.012 4.012 7 N -0.907 5.907 8 Si 0.980 3.020 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.183 3.817 13 C -0.196 4.196 14 C -0.076 4.076 15 C -0.006 4.006 16 N -0.587 5.587 17 H 0.426 0.574 18 C 0.081 3.919 19 C -0.269 4.269 20 C -0.076 4.076 21 C -0.222 4.222 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.266 0.734 28 H 0.125 0.875 29 H 0.143 0.857 30 H 0.213 0.787 31 H 0.141 0.859 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 4.930 10.644 12.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.006 4.006 3 N -0.175 5.175 4 C -0.442 4.442 5 H 0.083 0.917 6 C -0.213 4.213 7 N -0.545 5.545 8 Si 0.804 3.196 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.073 3.927 13 C -0.219 4.219 14 C -0.097 4.097 15 C -0.111 4.111 16 N -0.193 5.193 17 H 0.265 0.735 18 C -0.047 4.047 19 C -0.296 4.296 20 C -0.081 4.081 21 C -0.248 4.248 22 H 0.057 0.943 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.143 0.857 29 H 0.161 0.839 30 H 0.230 0.770 31 H 0.159 0.841 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.120 4.586 10.449 11.830 hybrid contribution 0.279 0.013 -0.955 0.995 sum -2.841 4.598 9.494 10.925 Atomic orbital electron populations 1.22092 0.96390 1.01603 1.00877 1.21299 0.93086 0.84348 1.01829 1.42351 1.61793 1.11537 1.01821 1.19349 1.32185 0.99226 0.93443 0.91655 1.26228 0.94297 0.97024 1.03708 1.70053 1.33045 1.16282 1.35154 0.85066 0.77796 0.78577 0.78147 1.19034 1.20742 1.19895 1.18358 0.94960 0.92224 0.87169 1.20289 1.10175 1.00508 0.90915 1.19652 1.00852 0.91261 0.97915 1.18079 1.11225 0.93545 0.88285 1.41539 1.58989 1.10658 1.08140 0.73508 1.22282 0.98579 0.90200 0.93674 1.21824 1.15356 0.96217 0.96177 1.19323 1.01101 0.95437 0.92213 1.19751 1.13898 0.94980 0.96208 0.94261 0.90581 0.93221 0.90500 0.93532 0.92494 0.85715 0.83914 0.77015 0.84105 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 10.13 71.98 0.73 -5.19 16 2 C 0.12 5.62 5.26 86.38 0.45 6.08 16 3 N -0.48 -25.60 2.61 -511.82 -1.34 -26.94 16 4 C -0.31 -17.69 8.29 84.04 0.70 -17.00 16 5 H 0.07 3.77 7.06 -2.91 -0.02 3.75 16 6 C -0.01 -0.68 5.10 84.85 0.43 -0.25 16 7 N -0.91 -51.67 11.36 21.64 0.25 -51.43 16 8 Si 0.98 43.70 29.57 68.60 2.03 45.73 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 C 0.18 9.18 6.50 38.31 0.25 9.43 16 13 C -0.20 -8.28 8.75 22.20 0.19 -8.08 16 14 C -0.08 -2.72 10.01 22.10 0.22 -2.50 16 15 C -0.01 -0.20 7.28 39.03 0.28 0.08 16 16 N -0.59 -15.36 6.07 -187.45 -1.14 -16.50 16 17 H 0.43 7.45 8.96 -92.71 -0.83 6.62 16 18 C 0.08 2.01 11.81 83.00 0.98 2.99 16 19 C -0.27 -9.21 11.08 23.51 0.26 -8.95 16 20 C -0.08 -3.25 6.37 -20.20 -0.13 -3.38 16 21 C -0.22 -11.17 9.33 22.65 0.21 -10.96 16 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 24 H 0.05 1.86 7.66 -2.39 -0.02 1.84 16 25 H 0.08 4.06 5.65 -2.39 -0.01 4.04 16 26 H 0.05 2.10 6.47 -2.39 -0.02 2.09 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.13 4.86 6.03 -2.91 -0.02 4.84 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.21 2.86 8.06 -2.91 -0.02 2.83 16 31 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 32 H 0.09 4.83 6.56 -2.91 -0.02 4.81 16 Total: -1.00 -68.59 268.00 4.69 -63.90 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.31 Total: 22.97 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 4.58 Total: -37.73 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -2.23 Total: -94.87 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.59 4.69 -63.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335750631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.601 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds