Wall clock time and date at job start Sun Mar 29 2020 21:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46925 * 2 1 4 4 C 1.50694 * 109.47249 * 239.99997 * 2 1 3 5 5 C 1.38385 * 119.92705 * 200.90550 * 4 2 1 6 6 C 1.38341 * 120.30818 * 180.02562 * 5 4 2 7 7 C 1.37968 * 120.15202 * 359.97438 * 6 5 4 8 8 C 1.39616 * 119.84539 * 359.76315 * 7 6 5 9 9 C 1.43197 * 120.15669 * 180.25774 * 8 7 6 10 10 N 5.95825 * 76.58562 * 251.98536 * 2 1 3 11 11 C 1.37930 * 119.92525 * 20.92481 * 4 2 1 12 12 N 1.46499 * 109.47331 * 120.00061 * 2 1 3 13 13 C 1.46499 * 120.00170 * 63.77809 * 12 2 1 14 14 C 1.36940 * 119.99665 * 243.77854 * 12 2 1 15 15 H 1.08004 * 120.00222 * 351.88558 * 14 12 2 16 16 C 1.38819 * 119.99777 * 171.88806 * 14 12 2 17 17 N 1.31618 * 119.99941 * 5.44481 * 16 14 12 18 18 Si 1.86806 * 119.99861 * 185.44587 * 16 14 12 19 19 H 1.48500 * 109.47087 * 60.00046 * 18 16 14 20 20 H 1.48500 * 109.46864 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46808 * 299.99889 * 18 16 14 22 22 H 1.08990 * 109.47379 * 60.00468 * 1 2 3 23 23 H 1.09003 * 109.46456 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46715 * 299.99778 * 1 2 3 25 25 H 1.08001 * 119.84913 * 0.03906 * 5 4 2 26 26 H 1.08000 * 119.92279 * 179.97438 * 6 5 4 27 27 H 1.08000 * 120.08177 * 180.02562 * 7 6 5 28 28 H 1.08000 * 120.07296 * 359.97438 * 11 4 2 29 29 H 1.08995 * 109.46858 * 3.34092 * 13 12 2 30 30 H 1.09005 * 109.46968 * 123.34415 * 13 12 2 31 31 H 1.09006 * 109.46830 * 243.34252 * 13 12 2 32 32 H 0.96998 * 119.99316 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 3.3188 -1.2197 -1.2567 6 6 3.7882 -1.8728 -2.3823 7 6 2.9752 -2.0210 -3.4871 8 6 1.6744 -1.5144 -3.4655 9 6 0.8230 -1.6694 -4.6064 10 7 0.1477 -1.7924 -5.5116 11 6 1.2090 -0.8511 -2.3280 12 7 2.0184 -0.6906 1.1961 13 6 1.7341 -2.1150 1.3870 14 6 2.7407 -0.0046 2.1358 15 1 3.0627 1.0069 1.9369 16 6 3.0590 -0.6094 3.3441 17 7 2.7609 -1.8756 3.5449 18 14 3.9105 0.3738 4.6850 19 1 3.0558 1.5242 5.0738 20 1 4.1389 -0.4957 5.8669 21 1 5.2142 0.8741 4.1797 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.9592 -1.1071 -0.3944 26 1 4.7934 -2.2675 -2.3962 27 1 3.3428 -2.5314 -4.3650 28 1 0.2052 -0.4532 -2.3062 29 1 1.2044 -2.4997 0.5155 30 1 2.6705 -2.6588 1.5124 31 1 1.1159 -2.2463 2.2752 32 1 2.9837 -2.2982 4.3891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335844115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:00 Heat of formation + Delta-G solvation = 84.079842 kcal Electronic energy + Delta-G solvation = -15417.974040 eV Core-core repulsion = 12958.789244 eV Total energy + Delta-G solvation = -2459.184795 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.44352 -36.69784 -35.71776 -32.81462 -31.09942 -30.07518 -28.36249 -26.04797 -24.16460 -23.36661 -21.96034 -19.88334 -17.79437 -16.93470 -16.03759 -15.25563 -14.87342 -14.20849 -13.92998 -13.72381 -13.66420 -12.94807 -12.89289 -12.49613 -12.32541 -12.03707 -11.58151 -11.44853 -11.19253 -10.91412 -10.76664 -10.62084 -10.38207 -10.24096 -10.01224 -9.77849 -8.70157 -8.57174 -8.41234 -6.98388 -5.67348 -3.11619 1.05321 1.59904 2.74520 3.14949 3.37056 3.43025 3.43599 4.02243 4.11985 4.47056 5.04599 5.08830 5.35422 5.44441 5.49671 5.67081 5.70577 5.95611 5.96841 6.17752 6.21668 6.33652 6.44702 6.63100 6.73103 6.81627 6.83418 7.06320 7.17463 7.56919 7.62494 7.71049 7.93463 8.34894 9.23697 9.85517 10.29146 11.31328 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044826 B = 0.006475 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.492279 B = 4322.957703 C = 4562.830826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.206 3.794 3 H 0.079 0.921 4 C -0.082 4.082 5 C -0.056 4.056 6 C -0.128 4.128 7 C -0.083 4.083 8 C -0.048 4.048 9 C 0.267 3.733 10 N -0.440 5.440 11 C -0.075 4.075 12 N -0.600 5.600 13 C 0.172 3.828 14 C -0.251 4.251 15 H 0.074 0.926 16 C -0.001 4.001 17 N -0.915 5.915 18 Si 0.907 3.093 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.285 1.285 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.141 0.859 26 H 0.127 0.873 27 H 0.123 0.877 28 H 0.131 0.869 29 H -0.008 1.008 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 1.153 -8.977 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.097 3.903 3 H 0.097 0.903 4 C -0.084 4.084 5 C -0.075 4.075 6 C -0.146 4.146 7 C -0.104 4.104 8 C -0.052 4.052 9 C -0.048 4.048 10 N -0.116 5.116 11 C -0.096 4.096 12 N -0.322 5.322 13 C 0.028 3.972 14 C -0.380 4.380 15 H 0.092 0.908 16 C -0.197 4.197 17 N -0.562 5.562 18 Si 0.737 3.263 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.158 0.842 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.149 0.851 29 H 0.010 0.990 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.463 0.838 -10.180 10.225 hybrid contribution 0.720 0.402 1.157 1.421 sum 0.257 1.240 -9.023 9.111 Atomic orbital electron populations 1.22400 0.97860 1.01458 1.00522 1.19258 0.92168 0.95026 0.83852 0.90345 1.21004 0.93711 0.97864 0.95842 1.21528 0.95617 0.92897 0.97430 1.21104 0.99969 1.00411 0.93159 1.21020 0.91954 0.98633 0.98803 1.15976 0.92825 1.06345 0.90027 1.25887 0.93022 0.92994 0.92863 1.81198 1.09617 1.09656 1.11135 1.21234 1.00050 0.97042 0.91247 1.44068 1.62192 1.06898 1.19085 1.20982 0.98950 0.82371 0.94887 1.19301 1.27142 0.97261 0.94299 0.90793 1.24873 1.00857 0.96225 0.97783 1.70216 1.51904 1.09771 1.24357 0.86294 0.79183 0.79041 0.81757 1.21172 1.21692 1.21154 0.93671 0.92951 0.92280 0.84162 0.85516 0.85910 0.85148 0.98970 0.94197 0.93861 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 8.25 37.16 0.31 -2.36 16 2 C 0.21 3.76 3.06 -69.09 -0.21 3.55 16 3 H 0.08 1.42 7.78 -51.93 -0.40 1.02 16 4 C -0.08 -1.32 4.66 -104.68 -0.49 -1.80 16 5 C -0.06 -0.89 8.94 -39.49 -0.35 -1.24 16 6 C -0.13 -1.66 10.03 -39.64 -0.40 -2.06 16 7 C -0.08 -1.02 9.76 -39.17 -0.38 -1.40 16 8 C -0.05 -0.64 5.73 -106.93 -0.61 -1.26 16 9 C 0.27 3.77 15.33 -22.47 -0.34 3.42 16 10 N -0.44 -6.93 18.54 41.84 0.78 -6.15 16 11 C -0.07 -1.06 8.83 -39.17 -0.35 -1.40 16 12 N -0.60 -13.66 2.10 -174.81 -0.37 -14.03 16 13 C 0.17 4.05 7.76 59.85 0.46 4.51 16 14 C -0.25 -6.36 9.80 -15.06 -0.15 -6.51 16 15 H 0.07 1.80 7.67 -52.48 -0.40 1.40 16 16 C 0.00 -0.02 5.46 -17.43 -0.10 -0.12 16 17 N -0.92 -25.36 9.47 55.49 0.53 -24.83 16 18 Si 0.91 20.96 29.56 -169.99 -5.02 15.94 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 22 H 0.04 0.60 6.66 -51.93 -0.35 0.26 16 23 H 0.05 0.88 7.36 -51.93 -0.38 0.50 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.14 2.53 7.68 -52.49 -0.40 2.13 16 26 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.13 1.68 5.98 -52.49 -0.31 1.37 16 29 H -0.01 -0.18 6.85 -51.93 -0.36 -0.53 16 30 H 0.04 1.02 7.19 -51.93 -0.37 0.65 16 31 H 0.04 1.13 6.91 -51.93 -0.36 0.77 16 32 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 275.22 15.07 4.15 4.15 Total: -1.00 -27.63 275.22 -6.29 -33.92 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -3.74 Total: -2.32 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.61 Total: -6.66 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.93 Total: -45.02 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.63 -6.29 -33.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335844115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.999 kcal (2) G-P(sol) polarization free energy of solvation -27.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds