Wall clock time and date at job start Sun Mar 29 2020 21:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46925 * 2 1 4 4 C 1.50694 * 109.47249 * 239.99997 * 2 1 3 5 5 C 1.38385 * 119.92705 * 200.90550 * 4 2 1 6 6 C 1.38341 * 120.30818 * 180.02562 * 5 4 2 7 7 C 1.37968 * 120.15202 * 359.97438 * 6 5 4 8 8 C 1.39616 * 119.84539 * 359.76315 * 7 6 5 9 9 C 1.43197 * 120.15669 * 180.25774 * 8 7 6 10 10 N 5.95825 * 76.58562 * 251.98536 * 2 1 3 11 11 C 1.37930 * 119.92525 * 20.92481 * 4 2 1 12 12 N 1.46499 * 109.47331 * 120.00061 * 2 1 3 13 13 C 1.46499 * 120.00170 * 63.77809 * 12 2 1 14 14 C 1.36940 * 119.99665 * 243.77854 * 12 2 1 15 15 H 1.08004 * 120.00222 * 351.88558 * 14 12 2 16 16 C 1.38819 * 119.99777 * 171.88806 * 14 12 2 17 17 N 1.31618 * 119.99941 * 5.44481 * 16 14 12 18 18 Si 1.86806 * 119.99861 * 185.44587 * 16 14 12 19 19 H 1.48500 * 109.47087 * 60.00046 * 18 16 14 20 20 H 1.48500 * 109.46864 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46808 * 299.99889 * 18 16 14 22 22 H 1.08990 * 109.47379 * 60.00468 * 1 2 3 23 23 H 1.09003 * 109.46456 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46715 * 299.99778 * 1 2 3 25 25 H 1.08001 * 119.84913 * 0.03906 * 5 4 2 26 26 H 1.08000 * 119.92279 * 179.97438 * 6 5 4 27 27 H 1.08000 * 120.08177 * 180.02562 * 7 6 5 28 28 H 1.08000 * 120.07296 * 359.97438 * 11 4 2 29 29 H 1.08995 * 109.46858 * 3.34092 * 13 12 2 30 30 H 1.09005 * 109.46968 * 123.34415 * 13 12 2 31 31 H 1.09006 * 109.46830 * 243.34252 * 13 12 2 32 32 H 0.96998 * 119.99316 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 3.3188 -1.2197 -1.2567 6 6 3.7882 -1.8728 -2.3823 7 6 2.9752 -2.0210 -3.4871 8 6 1.6744 -1.5144 -3.4655 9 6 0.8230 -1.6694 -4.6064 10 7 0.1477 -1.7924 -5.5116 11 6 1.2090 -0.8511 -2.3280 12 7 2.0184 -0.6906 1.1961 13 6 1.7341 -2.1150 1.3870 14 6 2.7407 -0.0046 2.1358 15 1 3.0627 1.0069 1.9369 16 6 3.0590 -0.6094 3.3441 17 7 2.7609 -1.8756 3.5449 18 14 3.9105 0.3738 4.6850 19 1 3.0558 1.5242 5.0738 20 1 4.1389 -0.4957 5.8669 21 1 5.2142 0.8741 4.1797 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.9592 -1.1071 -0.3944 26 1 4.7934 -2.2675 -2.3962 27 1 3.3428 -2.5314 -4.3650 28 1 0.2052 -0.4532 -2.3062 29 1 1.2044 -2.4997 0.5155 30 1 2.6705 -2.6588 1.5124 31 1 1.1159 -2.2463 2.2752 32 1 2.9837 -2.2982 4.3891 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335844115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:00 Heat of formation + Delta-G solvation = 70.706621 kcal Electronic energy + Delta-G solvation = -15418.553946 eV Core-core repulsion = 12958.789244 eV Total energy + Delta-G solvation = -2459.764702 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63718 -38.07789 -37.11459 -34.46305 -32.28121 -31.67548 -29.72674 -27.99195 -25.67921 -24.52386 -23.46792 -21.23454 -19.08804 -18.79443 -17.18717 -16.92659 -16.21706 -15.71385 -15.34383 -14.97810 -14.83806 -14.47414 -14.17021 -14.06082 -13.74138 -13.42817 -13.05423 -12.79073 -12.63623 -12.57400 -12.39975 -12.16890 -12.10707 -11.90219 -11.63568 -11.53157 -10.56311 -9.79669 -9.60534 -8.86810 -7.67185 -5.10757 -0.07173 0.50200 1.52398 1.54053 1.59913 1.63104 2.01547 2.56445 2.89952 3.00835 3.42176 3.75274 3.95856 4.07502 4.28636 4.48343 4.53389 4.61603 4.70507 4.86454 4.96695 5.03223 5.18106 5.20568 5.41541 5.47014 5.54461 5.61755 5.71783 5.88282 5.95392 6.01234 6.38578 6.46541 7.25626 7.98388 8.37494 9.30469 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.044826 B = 0.006475 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.492279 B = 4322.957703 C = 4562.830826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.200 3.800 3 H 0.077 0.923 4 C -0.097 4.097 5 C -0.072 4.072 6 C -0.121 4.121 7 C -0.067 4.067 8 C -0.046 4.046 9 C 0.287 3.713 10 N -0.467 5.467 11 C -0.068 4.068 12 N -0.611 5.611 13 C 0.197 3.803 14 C -0.248 4.248 15 H 0.081 0.919 16 C -0.058 4.058 17 N -0.946 5.946 18 Si 0.966 3.034 19 H -0.282 1.282 20 H -0.301 1.301 21 H -0.277 1.277 22 H 0.080 0.920 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.111 0.889 26 H 0.152 0.848 27 H 0.155 0.845 28 H 0.144 0.856 29 H 0.014 0.986 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 1.627 -10.905 11.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.093 3.907 3 H 0.095 0.905 4 C -0.099 4.099 5 C -0.091 4.091 6 C -0.139 4.139 7 C -0.087 4.087 8 C -0.050 4.050 9 C -0.028 4.028 10 N -0.143 5.143 11 C -0.089 4.089 12 N -0.334 5.334 13 C 0.052 3.948 14 C -0.378 4.378 15 H 0.099 0.901 16 C -0.251 4.251 17 N -0.595 5.595 18 Si 0.795 3.205 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.203 1.203 22 H 0.099 0.901 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.129 0.871 26 H 0.169 0.831 27 H 0.172 0.828 28 H 0.162 0.838 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.331 1.347 -12.150 12.229 hybrid contribution 0.688 0.277 1.632 1.793 sum 0.357 1.623 -10.518 10.648 Atomic orbital electron populations 1.22283 0.96147 1.01375 1.01533 1.19441 0.93297 0.94830 0.83084 0.90546 1.20631 0.94313 0.99299 0.95643 1.21401 0.95435 0.94518 0.97762 1.21293 1.01168 0.99275 0.92125 1.21343 0.91006 0.97064 0.99300 1.15982 0.93238 1.06329 0.89435 1.25804 0.92395 0.92147 0.92413 1.81237 1.10395 1.10613 1.12051 1.21235 1.00219 0.96698 0.90698 1.44205 1.62199 1.06670 1.20297 1.20519 0.96966 0.83030 0.94262 1.19666 1.26090 0.97451 0.94598 0.90136 1.25560 1.02569 0.97091 0.99884 1.70416 1.53788 1.11096 1.24210 0.85350 0.78525 0.77572 0.79037 1.20788 1.22719 1.20345 0.90130 0.93515 0.93778 0.87128 0.83076 0.82753 0.83804 0.96735 0.97008 0.97183 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.82 8.25 71.98 0.59 -4.22 16 2 C 0.20 7.17 3.06 44.24 0.14 7.30 16 3 H 0.08 2.72 7.78 -2.38 -0.02 2.70 16 4 C -0.10 -2.97 4.66 -19.90 -0.09 -3.06 16 5 C -0.07 -2.21 8.94 22.33 0.20 -2.01 16 6 C -0.12 -2.79 10.03 22.23 0.22 -2.57 16 7 C -0.07 -1.37 9.76 22.54 0.22 -1.15 16 8 C -0.05 -1.08 5.73 -21.36 -0.12 -1.20 16 9 C 0.29 7.17 15.33 88.33 1.35 8.53 16 10 N -0.47 -13.48 18.54 19.00 0.35 -13.13 16 11 C -0.07 -1.72 8.83 22.54 0.20 -1.52 16 12 N -0.61 -28.09 2.10 -706.97 -1.48 -29.57 16 13 C 0.20 9.47 7.76 127.77 0.99 10.46 16 14 C -0.25 -12.71 9.80 84.03 0.82 -11.89 16 15 H 0.08 3.93 7.67 -2.91 -0.02 3.90 16 16 C -0.06 -3.11 5.46 84.86 0.46 -2.65 16 17 N -0.95 -54.13 9.47 21.65 0.21 -53.93 16 18 Si 0.97 43.74 29.56 68.60 2.03 45.77 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 21 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 22 H 0.08 1.93 6.66 -2.39 -0.02 1.91 16 23 H 0.05 1.50 7.36 -2.39 -0.02 1.48 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.11 4.06 7.68 -2.91 -0.02 4.04 16 26 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 28 H 0.14 3.22 5.98 -2.91 -0.02 3.21 16 29 H 0.01 0.61 6.85 -2.39 -0.02 0.59 16 30 H 0.01 0.61 7.19 -2.38 -0.02 0.59 16 31 H 0.01 0.53 6.91 -2.38 -0.02 0.51 16 32 H 0.24 13.70 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -60.14 275.22 7.21 -52.93 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 1.12 Total: 1.89 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 4.99 Total: -3.97 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -0.93 Total: -96.63 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -60.14 7.21 -52.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335844115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.640 kcal (2) G-P(sol) polarization free energy of solvation -60.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds