Wall clock time and date at job start Sun Mar 29 2020 21:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47270 * 300.00029 * 3 2 1 6 6 H 1.48503 * 109.47066 * 59.99906 * 3 2 1 7 7 C 1.38813 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99569 * 164.41286 * 7 2 1 9 9 N 1.36931 * 120.00431 * 344.41505 * 7 2 1 10 10 C 1.47306 * 121.33903 * 155.87619 * 9 7 2 11 11 C 1.53095 * 107.95543 * 117.75334 * 10 9 7 12 12 C 1.49987 * 110.40471 * 45.67529 * 11 10 9 13 13 C 1.31102 * 124.38309 * 341.03110 * 12 11 10 14 14 C 1.47822 * 118.28285 * 180.77552 * 13 12 11 15 15 C 1.39962 * 120.55444 * 294.98072 * 14 13 12 16 16 C 1.38367 * 118.29361 * 180.02562 * 15 14 13 17 17 C 1.38337 * 119.30370 * 359.97438 * 16 15 14 18 18 N 1.31904 * 121.07217 * 359.72641 * 17 16 15 19 19 C 1.31713 * 121.87225 * 0.57331 * 18 17 16 20 20 C 1.47102 * 121.48863 * 336.10545 * 9 7 2 21 21 H 0.97002 * 120.00163 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.76521 * 358.14252 * 10 9 7 23 23 H 1.09000 * 109.80935 * 237.39215 * 10 9 7 24 24 H 1.08997 * 109.31357 * 285.38520 * 11 10 9 25 25 H 1.09005 * 109.15831 * 165.86443 * 11 10 9 26 26 H 1.07997 * 117.80794 * 161.00684 * 12 11 10 27 27 H 1.08003 * 120.85369 * 0.03872 * 15 14 13 28 28 H 1.07996 * 120.34947 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.46565 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.71256 * 179.70796 * 19 18 17 31 31 H 1.09000 * 109.70565 * 103.43857 * 20 9 7 32 32 H 1.09005 * 109.39921 * 343.22267 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0604 -1.2195 -0.2508 9 7 1.3633 -2.3661 0.3196 10 6 1.8579 -3.6714 -0.1511 11 6 2.2241 -4.5083 1.0774 12 6 1.1423 -4.4189 2.1124 13 6 0.2321 -3.4762 2.1526 14 6 -0.7628 -3.5093 3.2453 15 6 -1.6851 -4.5581 3.3364 16 6 -2.5959 -4.5420 4.3778 17 6 -2.5660 -3.5001 5.2874 18 7 -1.6812 -2.5278 5.1799 19 6 -0.7980 -2.4959 4.2033 20 6 0.1436 -2.3667 1.1419 21 1 -0.4850 0.8400 0.0004 22 1 2.7397 -3.5280 -0.7755 23 1 1.0797 -4.1769 -0.7228 24 1 3.1586 -4.1390 1.4997 25 1 2.3506 -5.5485 0.7769 26 1 1.1108 -5.1825 2.8755 27 1 -1.6857 -5.3596 2.6124 28 1 -3.3221 -5.3348 4.4800 29 1 -3.2755 -3.4852 6.1016 30 1 -0.0924 -1.6803 4.1461 31 1 -0.7282 -2.5217 0.5062 32 1 0.0541 -1.4106 1.6576 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336001378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:34 Heat of formation + Delta-G solvation = 69.907303 kcal Electronic energy + Delta-G solvation = -15542.799230 eV Core-core repulsion = 13082.999867 eV Total energy + Delta-G solvation = -2459.799363 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.84698 -37.40183 -33.69249 -32.32223 -31.65069 -29.91484 -28.71778 -25.49413 -23.57995 -23.25156 -22.28316 -20.98729 -17.74780 -16.77902 -16.24192 -15.86886 -15.44399 -14.61447 -14.02450 -13.77005 -13.58051 -13.32579 -12.83343 -12.70853 -12.35313 -12.10157 -11.52847 -11.33968 -10.93170 -10.76522 -10.53210 -10.29828 -9.84723 -9.79386 -9.55471 -9.23467 -8.82956 -8.60579 -7.87676 -6.76761 -5.81162 -3.20617 1.30871 1.51865 2.80936 3.37593 3.45433 3.47333 4.08013 4.47857 4.68608 5.04389 5.08219 5.21676 5.35077 5.37584 5.50968 5.68880 5.79562 5.97570 6.01662 6.12888 6.25935 6.31665 6.39866 6.51479 6.75193 6.84618 6.94031 7.15524 7.21237 7.35707 7.70885 7.79681 8.22876 8.35577 9.16864 9.79656 10.38101 11.28994 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026404 B = 0.008412 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.179536 B = 3327.677565 C = 4076.690844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.000 4.000 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.141 3.859 11 C -0.102 4.102 12 C -0.145 4.145 13 C -0.102 4.102 14 C -0.077 4.077 15 C -0.074 4.074 16 C -0.175 4.175 17 C 0.081 3.919 18 N -0.486 5.486 19 C 0.112 3.888 20 C 0.213 3.787 21 H 0.254 0.746 22 H 0.058 0.942 23 H 0.024 0.976 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.038 0.962 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -9.456 6.354 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.316 5.316 10 C 0.014 3.986 11 C -0.140 4.140 12 C -0.163 4.163 13 C -0.104 4.104 14 C -0.080 4.080 15 C -0.100 4.100 16 C -0.195 4.195 17 C -0.076 4.076 18 N -0.194 5.194 19 C -0.045 4.045 20 C 0.087 3.913 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.167 0.833 30 H 0.176 0.824 31 H 0.056 0.944 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.456 -8.608 6.954 11.336 hybrid contribution 0.262 0.095 -0.554 0.620 sum -2.194 -8.513 6.400 10.874 Atomic orbital electron populations 1.70015 1.05182 1.25506 1.54528 1.25006 0.95393 0.98348 1.01106 0.86192 0.79261 0.83846 0.77327 1.20261 1.21711 1.21500 1.19219 0.92320 0.84262 1.41834 0.91182 1.44132 1.29314 1.01316 1.56873 1.20985 0.97440 0.87239 0.92925 1.20856 0.97069 0.99242 0.96883 1.22002 0.97324 0.97527 0.99463 1.20865 0.94503 0.99558 0.95511 1.20229 0.96612 0.95102 0.96061 1.21732 0.93563 0.97533 0.97145 1.21997 1.00458 1.00476 0.96561 1.22682 0.96434 0.90323 0.98175 1.67623 1.04002 1.25100 1.22655 1.23020 0.95423 0.96931 0.89107 1.19600 0.88677 0.94046 0.88932 0.93572 0.92343 0.95812 0.91450 0.92451 0.89732 0.85105 0.85219 0.83338 0.82445 0.94429 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.21 11.07 55.49 0.61 -25.59 16 2 C 0.00 -0.01 5.01 -17.43 -0.09 -0.10 16 3 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.75 9.71 -15.06 -0.15 -6.89 16 8 H 0.07 1.87 7.88 -52.49 -0.41 1.46 16 9 N -0.59 -14.92 3.00 -173.62 -0.52 -15.44 16 10 C 0.14 2.92 6.56 -3.55 -0.02 2.90 16 11 C -0.10 -1.79 6.28 -28.18 -0.18 -1.96 16 12 C -0.14 -2.61 9.38 -36.40 -0.34 -2.96 16 13 C -0.10 -2.02 5.37 -102.62 -0.55 -2.57 16 14 C -0.08 -1.37 5.12 -104.86 -0.54 -1.91 16 15 C -0.07 -1.10 9.83 -38.89 -0.38 -1.48 16 16 C -0.18 -2.26 10.10 -39.50 -0.40 -2.65 16 17 C 0.08 1.12 11.17 -17.48 -0.20 0.93 16 18 N -0.49 -8.28 10.35 -12.92 -0.13 -8.42 16 19 C 0.11 2.02 10.91 -17.14 -0.19 1.84 16 20 C 0.21 5.12 4.92 -5.04 -0.02 5.10 16 21 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 22 H 0.06 1.17 7.96 -51.93 -0.41 0.75 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.36 7.94 -52.49 -0.42 0.95 16 27 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.16 2.86 8.06 -52.49 -0.42 2.44 16 31 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 2.48 6.37 -51.93 -0.33 2.15 16 LS Contribution 272.94 15.07 4.11 4.11 Total: -1.00 -30.00 272.94 -8.10 -38.10 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.09 Total: 0.33 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -3.05 Total: -9.76 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.04 Total: -49.45 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.00 -8.10 -38.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336001378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.005 kcal (2) G-P(sol) polarization free energy of solvation -29.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds