Wall clock time and date at job start Sun Mar 29 2020 21:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47270 * 300.00029 * 3 2 1 6 6 H 1.48503 * 109.47066 * 59.99906 * 3 2 1 7 7 C 1.38813 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99569 * 164.41286 * 7 2 1 9 9 N 1.36931 * 120.00431 * 344.41505 * 7 2 1 10 10 C 1.47306 * 121.33903 * 155.87619 * 9 7 2 11 11 C 1.53095 * 107.95543 * 117.75334 * 10 9 7 12 12 C 1.49987 * 110.40471 * 45.67529 * 11 10 9 13 13 C 1.31102 * 124.38309 * 341.03110 * 12 11 10 14 14 C 1.47822 * 118.28285 * 180.77552 * 13 12 11 15 15 C 1.39962 * 120.55444 * 294.98072 * 14 13 12 16 16 C 1.38367 * 118.29361 * 180.02562 * 15 14 13 17 17 C 1.38337 * 119.30370 * 359.97438 * 16 15 14 18 18 N 1.31904 * 121.07217 * 359.72641 * 17 16 15 19 19 C 1.31713 * 121.87225 * 0.57331 * 18 17 16 20 20 C 1.47102 * 121.48863 * 336.10545 * 9 7 2 21 21 H 0.97002 * 120.00163 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.76521 * 358.14252 * 10 9 7 23 23 H 1.09000 * 109.80935 * 237.39215 * 10 9 7 24 24 H 1.08997 * 109.31357 * 285.38520 * 11 10 9 25 25 H 1.09005 * 109.15831 * 165.86443 * 11 10 9 26 26 H 1.07997 * 117.80794 * 161.00684 * 12 11 10 27 27 H 1.08003 * 120.85369 * 0.03872 * 15 14 13 28 28 H 1.07996 * 120.34947 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.46565 * 180.02562 * 17 16 15 30 30 H 1.08002 * 119.71256 * 179.70796 * 19 18 17 31 31 H 1.09000 * 109.70565 * 103.43857 * 20 9 7 32 32 H 1.09005 * 109.39921 * 343.22267 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0604 -1.2195 -0.2508 9 7 1.3633 -2.3661 0.3196 10 6 1.8579 -3.6714 -0.1511 11 6 2.2241 -4.5083 1.0774 12 6 1.1423 -4.4189 2.1124 13 6 0.2321 -3.4762 2.1526 14 6 -0.7628 -3.5093 3.2453 15 6 -1.6851 -4.5581 3.3364 16 6 -2.5959 -4.5420 4.3778 17 6 -2.5660 -3.5001 5.2874 18 7 -1.6812 -2.5278 5.1799 19 6 -0.7980 -2.4959 4.2033 20 6 0.1436 -2.3667 1.1419 21 1 -0.4850 0.8400 0.0004 22 1 2.7397 -3.5280 -0.7755 23 1 1.0797 -4.1769 -0.7228 24 1 3.1586 -4.1390 1.4997 25 1 2.3506 -5.5485 0.7769 26 1 1.1108 -5.1825 2.8755 27 1 -1.6857 -5.3596 2.6124 28 1 -3.3221 -5.3348 4.4800 29 1 -3.2755 -3.4852 6.1016 30 1 -0.0924 -1.6803 4.1461 31 1 -0.7282 -2.5217 0.5062 32 1 0.0541 -1.4106 1.6576 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336001378.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:34 Heat of formation + Delta-G solvation = 52.346959 kcal Electronic energy + Delta-G solvation = -15543.560703 eV Core-core repulsion = 13082.999867 eV Total energy + Delta-G solvation = -2460.560837 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07787 -39.03620 -35.40814 -33.92236 -32.86523 -31.74831 -30.17074 -27.44601 -25.02165 -24.53141 -23.88366 -22.56933 -19.46288 -18.05446 -17.94635 -17.15728 -17.00704 -16.34609 -15.60086 -15.46204 -14.95241 -14.74326 -14.40735 -14.01933 -13.98972 -13.58294 -13.16935 -12.88918 -12.79628 -12.57565 -12.31525 -12.14440 -11.75057 -11.36958 -10.81062 -10.68102 -10.47411 -10.07241 -9.36039 -8.78053 -7.90484 -5.32814 0.10804 0.34995 1.34397 1.44496 1.46695 1.56863 2.48833 2.87797 3.26739 3.47218 3.63700 3.90339 4.03709 4.06139 4.21403 4.28989 4.37714 4.61163 4.65630 4.75757 4.89171 4.90408 5.12840 5.15369 5.18570 5.32085 5.34063 5.43110 5.59526 5.77128 5.85273 6.11030 6.30794 7.03465 7.09745 7.79749 8.34614 9.17827 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.026404 B = 0.008412 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.179536 B = 3327.677565 C = 4076.690844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.256 4.256 8 H 0.074 0.926 9 N -0.615 5.615 10 C 0.133 3.867 11 C -0.096 4.096 12 C -0.127 4.127 13 C -0.120 4.120 14 C -0.097 4.097 15 C -0.074 4.074 16 C -0.158 4.158 17 C 0.079 3.921 18 N -0.510 5.510 19 C 0.088 3.912 20 C 0.228 3.772 21 H 0.249 0.751 22 H 0.063 0.937 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.099 0.901 26 H 0.116 0.884 27 H 0.151 0.849 28 H 0.176 0.824 29 H 0.187 0.813 30 H 0.135 0.865 31 H 0.001 0.999 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 -11.815 7.405 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.188 1.188 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.386 4.386 8 H 0.092 0.908 9 N -0.338 5.338 10 C 0.008 3.992 11 C -0.134 4.134 12 C -0.146 4.146 13 C -0.122 4.122 14 C -0.099 4.099 15 C -0.100 4.100 16 C -0.177 4.177 17 C -0.078 4.078 18 N -0.218 5.218 19 C -0.068 4.068 20 C 0.103 3.897 21 H 0.058 0.942 22 H 0.081 0.919 23 H 0.042 0.958 24 H 0.088 0.912 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.169 0.831 28 H 0.193 0.807 29 H 0.203 0.797 30 H 0.153 0.847 31 H 0.019 0.981 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.420 -10.996 8.000 13.812 hybrid contribution 0.210 0.726 -0.877 1.158 sum -2.209 -10.270 7.123 12.692 Atomic orbital electron populations 1.70189 1.06634 1.25690 1.56104 1.25776 0.96136 1.01470 1.01591 0.85196 0.78714 0.79823 0.76716 1.18793 1.21792 1.21983 1.19568 0.92678 0.85466 1.40890 0.90814 1.44432 1.29394 1.02395 1.57612 1.21208 0.97425 0.85830 0.94744 1.20833 0.96746 1.00831 0.95029 1.22315 0.95727 0.97036 0.99478 1.20481 0.96978 0.98852 0.95884 1.20113 0.97624 0.96544 0.95649 1.22029 0.92834 0.97019 0.98093 1.22456 0.99879 1.00763 0.94610 1.23405 0.95724 0.89502 0.99179 1.67600 1.04767 1.26819 1.22654 1.22779 0.96346 0.97139 0.90517 1.19138 0.87295 0.94230 0.89069 0.94212 0.91879 0.95763 0.91221 0.88314 0.86618 0.83084 0.80674 0.79660 0.84725 0.98111 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.97 11.07 21.65 0.24 -56.73 16 2 C -0.05 -3.14 5.01 84.86 0.43 -2.71 16 3 Si 0.97 45.85 29.58 68.60 2.03 47.88 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.26 -14.32 9.71 84.03 0.82 -13.50 16 8 H 0.07 3.97 7.88 -2.91 -0.02 3.94 16 9 N -0.61 -31.68 3.00 -703.21 -2.11 -33.79 16 10 C 0.13 5.44 6.56 86.26 0.57 6.01 16 11 C -0.10 -3.13 6.28 29.66 0.19 -2.94 16 12 C -0.13 -4.34 9.38 25.32 0.24 -4.10 16 13 C -0.12 -4.77 5.37 -17.58 -0.09 -4.87 16 14 C -0.10 -3.41 5.12 -20.02 -0.10 -3.52 16 15 C -0.07 -2.02 9.83 22.72 0.22 -1.79 16 16 C -0.16 -3.45 10.10 22.32 0.23 -3.22 16 17 C 0.08 1.98 11.17 84.71 0.95 2.92 16 18 N -0.51 -17.20 10.35 -194.79 -2.02 -19.22 16 19 C 0.09 3.29 10.91 85.01 0.93 4.22 16 20 C 0.23 11.56 4.92 85.40 0.42 11.98 16 21 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 22 H 0.06 2.47 7.96 -2.39 -0.02 2.45 16 23 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 24 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 26 H 0.12 3.29 7.94 -2.91 -0.02 3.26 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 28 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 29 H 0.19 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.14 5.39 8.06 -2.91 -0.02 5.37 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.05 3.15 6.37 -2.38 -0.02 3.13 16 Total: -1.00 -68.20 272.94 4.02 -64.18 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.10 Total: 9.20 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 4.78 Total: -11.52 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -3.89 Total: -109.74 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -68.20 4.02 -64.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336001378.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.527 kcal (2) G-P(sol) polarization free energy of solvation -68.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds