Wall clock time and date at job start Sun Mar 29 2020 21:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37971 * 120.08143 * 2 1 4 4 C 1.38338 * 120.15422 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.84704 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46790 * 90.00355 * 5 4 3 7 7 C 1.46504 * 119.99967 * 269.99758 * 6 5 4 8 8 C 1.36943 * 120.00168 * 90.00150 * 6 5 4 9 9 H 1.07999 * 119.99617 * 20.38798 * 8 6 5 10 10 C 1.38806 * 120.00077 * 200.38683 * 8 6 5 11 11 N 1.31619 * 120.00264 * 14.97092 * 10 8 6 12 12 Si 1.86795 * 119.99986 * 194.96826 * 10 8 6 13 13 H 1.48510 * 109.47170 * 85.00535 * 12 10 8 14 14 H 1.48497 * 109.47253 * 205.00232 * 12 10 8 15 15 H 1.48498 * 109.47267 * 325.00131 * 12 10 8 16 16 C 1.38385 * 120.30339 * 359.72878 * 4 3 2 17 17 C 1.37925 * 120.15484 * 0.55372 * 16 4 3 18 18 C 1.39619 * 120.07527 * 179.97438 * 2 1 3 19 19 C 1.43196 * 120.14758 * 359.97438 * 18 2 1 20 20 N 3.48502 * 80.49417 * 179.97438 * 2 1 3 21 21 H 1.09008 * 109.46637 * 270.01936 * 1 2 3 22 22 H 1.09000 * 109.46820 * 30.01130 * 1 2 3 23 23 H 1.08999 * 109.47467 * 150.02163 * 1 2 3 24 24 H 1.07999 * 119.91715 * 359.96503 * 3 2 1 25 25 H 1.08995 * 109.47404 * 209.99751 * 5 4 3 26 26 H 1.08992 * 109.47549 * 330.00478 * 5 4 3 27 27 H 1.08998 * 109.47024 * 95.09854 * 7 6 5 28 28 H 1.09000 * 109.46706 * 215.09938 * 7 6 5 29 29 H 1.09001 * 109.46865 * 335.09660 * 7 6 5 30 30 H 0.96994 * 120.00572 * 180.02562 * 11 10 8 31 31 H 1.08007 * 119.92313 * 180.27915 * 16 4 3 32 32 H 1.07998 * 120.08390 * 179.72305 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 0.0005 5 6 4.3302 2.5037 0.0011 6 7 4.5722 2.9271 1.3826 7 6 3.5920 3.7690 2.0731 8 6 5.7148 2.5362 2.0285 9 1 6.5729 2.2115 1.4587 10 6 5.7698 2.5571 3.4153 11 7 4.6610 2.6626 4.1165 12 14 7.4177 2.4355 4.2865 13 1 8.0270 3.7863 4.3839 14 1 7.2171 1.8835 5.6503 15 1 8.3192 1.5401 3.5178 16 6 4.2817 0.0018 0.0067 17 6 3.6032 -1.1990 0.0009 18 6 2.2067 -1.2082 0.0005 19 6 1.4955 -2.4511 0.0016 20 7 0.9314 -3.4372 0.0015 21 1 -0.3633 0.0003 1.0278 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3634 -0.8901 -0.5135 24 1 1.6585 2.1292 -0.0006 25 1 5.2834 2.3772 -0.5123 26 1 3.7384 3.2611 -0.5127 27 1 2.9222 3.1402 2.6597 28 1 4.1109 4.4630 2.7343 29 1 3.0137 4.3300 1.3390 30 1 4.6995 2.6776 5.0855 31 1 5.3617 0.0103 0.0117 32 1 4.1505 -2.1301 0.0012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336096228.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:39 Heat of formation + Delta-G solvation = 68.854166 kcal Electronic energy + Delta-G solvation = -15267.695331 eV Core-core repulsion = 12807.850300 eV Total energy + Delta-G solvation = -2459.845030 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.30445 -36.44936 -35.43242 -32.74872 -31.83504 -30.34330 -26.92791 -26.50086 -25.78281 -22.57052 -21.57089 -20.30575 -18.23732 -16.82146 -15.41105 -15.19088 -14.61942 -14.11098 -14.10278 -13.63149 -13.30461 -12.98013 -12.90875 -12.73816 -12.50357 -12.25926 -11.92722 -11.47219 -11.36105 -10.92905 -10.85765 -10.73360 -10.63208 -10.32474 -10.08256 -9.95876 -8.65613 -8.42481 -8.19597 -6.92278 -5.84626 -3.25292 1.19109 1.79281 2.90441 3.27701 3.34186 3.40005 3.40725 4.20176 4.25748 4.44526 5.03360 5.09261 5.29696 5.42680 5.59616 5.65562 5.72879 5.80153 5.92800 5.96009 6.09380 6.25300 6.47327 6.54524 6.64537 6.71788 6.76361 7.18064 7.27723 7.32926 7.62938 7.71332 7.73671 8.25662 9.10028 9.72699 10.20136 11.19500 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030099 B = 0.007105 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.033276 B = 3939.824191 C = 4253.129121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.039 4.039 3 C -0.119 4.119 4 C -0.044 4.044 5 C 0.173 3.827 6 N -0.586 5.586 7 C 0.160 3.840 8 C -0.255 4.255 9 H 0.073 0.927 10 C 0.004 3.996 11 N -0.899 5.899 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.279 1.279 16 C -0.111 4.111 17 C -0.067 4.067 18 C -0.068 4.068 19 C 0.273 3.727 20 N -0.450 5.450 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.123 0.877 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.001 0.999 30 H 0.255 0.745 31 H 0.128 0.872 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 -1.054 -8.403 9.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.042 4.042 3 C -0.138 4.138 4 C -0.049 4.049 5 C 0.046 3.954 6 N -0.306 5.306 7 C 0.015 3.985 8 C -0.384 4.384 9 H 0.091 0.909 10 C -0.196 4.196 11 N -0.542 5.542 12 Si 0.736 3.264 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.204 1.204 16 C -0.130 4.130 17 C -0.087 4.087 18 C -0.073 4.073 19 C -0.041 4.041 20 N -0.126 5.126 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.141 0.859 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.019 0.981 30 H 0.065 0.935 31 H 0.146 0.854 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.435 -2.502 -8.170 9.627 hybrid contribution 1.020 0.088 0.893 1.358 sum -3.415 -2.414 -7.277 8.393 Atomic orbital electron populations 1.20844 0.91387 1.02536 1.02680 1.19764 0.95415 0.91766 0.97229 1.20751 0.93932 0.96587 1.02496 1.21473 0.93905 0.98196 0.91349 1.20117 0.97073 0.89757 0.88417 1.44257 1.21423 1.54554 1.10361 1.20877 0.91513 0.92880 0.93205 1.19264 0.89602 1.40497 0.89060 0.90925 1.25043 0.97015 1.00733 0.96769 1.70080 1.25118 1.53340 1.05699 0.86249 0.83304 0.77888 0.78970 1.21295 1.21704 1.20398 1.20907 1.00260 0.91155 1.00673 1.21036 0.91651 0.98710 0.97338 1.15748 0.92331 0.86055 1.13123 1.25838 0.92804 0.92768 0.92700 1.81173 1.09289 1.11325 1.10844 0.90770 0.90913 0.92186 0.85882 0.92351 0.92956 0.95035 0.93497 0.98052 0.93504 0.85442 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.61 36.00 0.35 -1.12 16 2 C -0.04 -0.59 5.91 -104.21 -0.62 -1.20 16 3 C -0.12 -1.89 9.34 -39.64 -0.37 -2.26 16 4 C -0.04 -0.76 5.47 -104.53 -0.57 -1.34 16 5 C 0.17 3.19 5.82 -5.19 -0.03 3.16 16 6 N -0.59 -13.58 2.91 -182.50 -0.53 -14.11 16 7 C 0.16 3.67 9.02 59.85 0.54 4.21 16 8 C -0.25 -6.51 9.68 -15.06 -0.15 -6.65 16 9 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 10 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 11 N -0.90 -25.15 10.67 55.49 0.59 -24.56 16 12 Si 0.91 20.97 29.58 -169.99 -5.03 15.95 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 C -0.11 -1.85 9.68 -39.64 -0.38 -2.23 16 17 C -0.07 -1.02 9.76 -39.17 -0.38 -1.40 16 18 C -0.07 -1.06 5.73 -106.93 -0.61 -1.68 16 19 C 0.27 4.35 13.80 -22.47 -0.31 4.04 16 20 N -0.45 -7.73 18.54 41.84 0.78 -6.96 16 21 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 22 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 23 H 0.06 0.73 7.09 -51.93 -0.37 0.36 16 24 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 25 H 0.06 1.02 7.97 -51.93 -0.41 0.60 16 26 H 0.05 0.85 7.80 -51.93 -0.41 0.45 16 27 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 28 H 0.05 1.17 7.21 -51.93 -0.37 0.79 16 29 H 0.00 0.02 7.84 -51.93 -0.41 -0.39 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 32 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 283.78 15.07 4.28 4.28 Total: -1.00 -28.63 283.78 -6.55 -35.18 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -4.01 Total: -3.32 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.63 Total: -6.46 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.84 Total: -45.63 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.63 -6.55 -35.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336096228.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.036 kcal (2) G-P(sol) polarization free energy of solvation -28.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds