Wall clock time and date at job start Sun Mar 29 2020 21:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37971 * 120.08143 * 2 1 4 4 C 1.38338 * 120.15422 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.84704 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46790 * 90.00355 * 5 4 3 7 7 C 1.46504 * 119.99967 * 269.99758 * 6 5 4 8 8 C 1.36943 * 120.00168 * 90.00150 * 6 5 4 9 9 H 1.07999 * 119.99617 * 20.38798 * 8 6 5 10 10 C 1.38806 * 120.00077 * 200.38683 * 8 6 5 11 11 N 1.31619 * 120.00264 * 14.97092 * 10 8 6 12 12 Si 1.86795 * 119.99986 * 194.96826 * 10 8 6 13 13 H 1.48510 * 109.47170 * 85.00535 * 12 10 8 14 14 H 1.48497 * 109.47253 * 205.00232 * 12 10 8 15 15 H 1.48498 * 109.47267 * 325.00131 * 12 10 8 16 16 C 1.38385 * 120.30339 * 359.72878 * 4 3 2 17 17 C 1.37925 * 120.15484 * 0.55372 * 16 4 3 18 18 C 1.39619 * 120.07527 * 179.97438 * 2 1 3 19 19 C 1.43196 * 120.14758 * 359.97438 * 18 2 1 20 20 N 3.48502 * 80.49417 * 179.97438 * 2 1 3 21 21 H 1.09008 * 109.46637 * 270.01936 * 1 2 3 22 22 H 1.09000 * 109.46820 * 30.01130 * 1 2 3 23 23 H 1.08999 * 109.47467 * 150.02163 * 1 2 3 24 24 H 1.07999 * 119.91715 * 359.96503 * 3 2 1 25 25 H 1.08995 * 109.47404 * 209.99751 * 5 4 3 26 26 H 1.08992 * 109.47549 * 330.00478 * 5 4 3 27 27 H 1.08998 * 109.47024 * 95.09854 * 7 6 5 28 28 H 1.09000 * 109.46706 * 215.09938 * 7 6 5 29 29 H 1.09001 * 109.46865 * 335.09660 * 7 6 5 30 30 H 0.96994 * 120.00572 * 180.02562 * 11 10 8 31 31 H 1.08007 * 119.92313 * 180.27915 * 16 4 3 32 32 H 1.07998 * 120.08390 * 179.72305 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1939 0.0000 4 6 3.5819 1.1956 0.0005 5 6 4.3302 2.5037 0.0011 6 7 4.5722 2.9271 1.3826 7 6 3.5920 3.7690 2.0731 8 6 5.7148 2.5362 2.0285 9 1 6.5729 2.2115 1.4587 10 6 5.7698 2.5571 3.4153 11 7 4.6610 2.6626 4.1165 12 14 7.4177 2.4355 4.2865 13 1 8.0270 3.7863 4.3839 14 1 7.2171 1.8835 5.6503 15 1 8.3192 1.5401 3.5178 16 6 4.2817 0.0018 0.0067 17 6 3.6032 -1.1990 0.0009 18 6 2.2067 -1.2082 0.0005 19 6 1.4955 -2.4511 0.0016 20 7 0.9314 -3.4372 0.0015 21 1 -0.3633 0.0003 1.0278 22 1 -0.3633 0.8899 -0.5140 23 1 -0.3634 -0.8901 -0.5135 24 1 1.6585 2.1292 -0.0006 25 1 5.2834 2.3772 -0.5123 26 1 3.7384 3.2611 -0.5127 27 1 2.9222 3.1402 2.6597 28 1 4.1109 4.4630 2.7343 29 1 3.0137 4.3300 1.3390 30 1 4.6995 2.6776 5.0855 31 1 5.3617 0.0103 0.0117 32 1 4.1505 -2.1301 0.0012 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336096228.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:38 Heat of formation + Delta-G solvation = 54.472174 kcal Electronic energy + Delta-G solvation = -15268.318981 eV Core-core repulsion = 12807.850300 eV Total energy + Delta-G solvation = -2460.468680 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.58073 -37.89407 -37.00883 -34.15925 -33.27854 -31.93605 -28.23205 -27.95414 -27.56063 -24.10962 -22.94290 -21.75647 -19.50765 -18.68080 -16.89547 -16.69691 -16.07187 -15.54912 -15.35840 -15.20994 -14.98994 -14.43057 -14.05841 -13.98352 -13.85735 -13.63296 -13.15895 -13.06843 -12.91973 -12.63353 -12.44559 -12.22665 -12.12743 -11.91786 -11.84551 -11.66068 -10.58989 -9.67881 -9.49313 -8.77959 -7.78891 -5.22568 -0.08478 0.55034 1.50326 1.51906 1.58753 1.61407 1.99465 2.55473 2.91873 2.99405 3.37500 3.88056 3.92094 3.95810 4.16161 4.47768 4.53912 4.70541 4.75779 4.77540 4.86076 4.93635 5.04687 5.15230 5.29681 5.37367 5.45869 5.52672 5.69490 5.80294 5.86691 6.05708 6.36053 6.45198 7.19096 7.91080 8.32980 9.24097 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.030099 B = 0.007105 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.033276 B = 3939.824191 C = 4253.129121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.038 4.038 3 C -0.122 4.122 4 C -0.057 4.057 5 C 0.172 3.828 6 N -0.604 5.604 7 C 0.174 3.826 8 C -0.252 4.252 9 H 0.078 0.922 10 C -0.052 4.052 11 N -0.935 5.935 12 Si 0.960 3.040 13 H -0.287 1.287 14 H -0.302 1.302 15 H -0.267 1.267 16 C -0.123 4.123 17 C -0.065 4.065 18 C -0.070 4.070 19 C 0.288 3.712 20 N -0.469 5.469 21 H 0.076 0.924 22 H 0.096 0.904 23 H 0.061 0.939 24 H 0.139 0.861 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.003 0.997 28 H 0.015 0.985 29 H 0.037 0.963 30 H 0.245 0.755 31 H 0.130 0.870 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 -1.407 -9.869 10.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.041 4.041 3 C -0.140 4.140 4 C -0.061 4.061 5 C 0.047 3.953 6 N -0.326 5.326 7 C 0.030 3.970 8 C -0.382 4.382 9 H 0.096 0.904 10 C -0.247 4.247 11 N -0.582 5.582 12 Si 0.789 3.211 13 H -0.214 1.214 14 H -0.229 1.229 15 H -0.192 1.192 16 C -0.141 4.141 17 C -0.086 4.086 18 C -0.075 4.075 19 C -0.026 4.026 20 N -0.146 5.146 21 H 0.094 0.906 22 H 0.114 0.886 23 H 0.080 0.920 24 H 0.157 0.843 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.021 0.979 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.148 0.852 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.754 -2.883 -9.698 11.179 hybrid contribution 1.040 0.138 1.151 1.557 sum -3.715 -2.745 -8.547 9.715 Atomic orbital electron populations 1.20901 0.89382 1.03860 1.03174 1.20066 0.96937 0.91197 0.95866 1.20954 0.93515 0.97637 1.01929 1.21416 0.94645 0.97825 0.92254 1.20231 0.98191 0.90950 0.85931 1.44327 1.21179 1.55625 1.11438 1.20597 0.90931 0.92077 0.93439 1.19555 0.90878 1.38551 0.89221 0.90437 1.25671 0.99391 1.01983 0.97672 1.70239 1.26624 1.56276 1.05045 0.85380 0.80527 0.77703 0.77444 1.21373 1.22943 1.19196 1.21046 1.00602 0.91524 1.00969 1.21247 0.91733 0.99225 0.96366 1.15910 0.92563 0.86152 1.12826 1.25782 0.92272 0.92476 0.92062 1.81198 1.09975 1.11912 1.11481 0.90560 0.88555 0.91985 0.84327 0.91570 0.90516 0.97881 0.96573 0.94417 0.94551 0.85236 0.83923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.56 9.61 71.24 0.68 -1.87 16 2 C -0.04 -1.05 5.91 -19.59 -0.12 -1.16 16 3 C -0.12 -3.57 9.34 22.23 0.21 -3.37 16 4 C -0.06 -1.88 5.47 -19.81 -0.11 -1.98 16 5 C 0.17 5.98 5.82 85.63 0.50 6.48 16 6 N -0.60 -27.44 2.91 -731.31 -2.13 -29.57 16 7 C 0.17 7.97 9.02 127.77 1.15 9.13 16 8 C -0.25 -12.75 9.68 84.03 0.81 -11.94 16 9 H 0.08 3.75 7.86 -2.91 -0.02 3.73 16 10 C -0.05 -2.78 5.06 84.86 0.43 -2.35 16 11 N -0.94 -53.59 10.67 21.65 0.23 -53.36 16 12 Si 0.96 43.54 29.58 68.60 2.03 45.57 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 C -0.12 -3.87 9.68 22.23 0.22 -3.65 16 17 C -0.07 -1.86 9.76 22.54 0.22 -1.64 16 18 C -0.07 -2.04 5.73 -21.36 -0.12 -2.16 16 19 C 0.29 8.58 13.80 88.33 1.22 9.80 16 20 N -0.47 -15.28 18.54 19.00 0.35 -14.93 16 21 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 22 H 0.10 1.66 8.09 -2.39 -0.02 1.64 16 23 H 0.06 1.35 7.09 -2.39 -0.02 1.33 16 24 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 25 H 0.07 2.17 7.97 -2.39 -0.02 2.15 16 26 H 0.08 2.26 7.80 -2.39 -0.02 2.24 16 27 H 0.00 0.15 7.40 -2.39 -0.02 0.13 16 28 H 0.02 0.80 7.21 -2.39 -0.02 0.78 16 29 H 0.04 1.40 7.84 -2.39 -0.02 1.38 16 30 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 32 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -60.94 283.78 6.69 -54.25 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: 1.11 Total: 2.77 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.09 Total: -4.74 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -1.55 Total: -97.85 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -60.94 6.69 -54.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336096228.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.722 kcal (2) G-P(sol) polarization free energy of solvation -60.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds