Wall clock time and date at job start Sun Mar 29 2020 21:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39899 * 110.63060 * 2 1 4 4 C 1.55140 * 110.85557 * 236.78735 * 2 1 3 5 5 C 1.54909 * 101.65348 * 205.89439 * 4 2 1 6 6 N 1.47846 * 104.79456 * 37.07253 * 5 4 2 7 7 C 1.46903 * 110.99792 * 213.63439 * 6 5 4 8 8 C 1.50694 * 109.47066 * 290.84234 * 7 6 5 9 9 O 1.21297 * 120.00199 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99735 * 179.72439 * 10 8 7 12 12 H 1.07998 * 120.00618 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99464 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99620 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00237 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46896 * 89.99788 * 15 13 11 17 17 H 1.48497 * 109.46972 * 209.99368 * 15 13 11 18 18 H 1.48494 * 109.47103 * 329.99983 * 15 13 11 19 19 C 1.47445 * 108.56658 * 335.90036 * 6 5 4 20 20 H 1.09008 * 109.46816 * 296.89686 * 1 2 3 21 21 H 1.09000 * 109.46848 * 56.89547 * 1 2 3 22 22 H 1.09002 * 109.47403 * 176.89884 * 1 2 3 23 23 H 1.09000 * 110.99257 * 323.98957 * 4 2 1 24 24 H 1.08995 * 110.98767 * 87.76625 * 4 2 1 25 25 H 1.09000 * 110.37465 * 278.24314 * 5 4 2 26 26 H 1.09000 * 110.37100 * 155.89764 * 5 4 2 27 27 H 1.08998 * 109.46809 * 170.84336 * 7 6 5 28 28 H 1.09002 * 109.47056 * 50.84077 * 7 6 5 29 29 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 30 30 H 0.97000 * 119.99478 * 180.02562 * 14 13 11 31 31 H 1.09007 * 109.88335 * 120.39813 * 19 6 5 32 32 H 1.09002 * 109.88925 * 241.42035 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0229 1.3093 0.0000 4 6 2.0823 -0.7941 -1.2129 5 6 3.4691 -1.2424 -0.6881 6 7 3.2514 -1.5457 0.7424 7 6 4.4411 -1.2138 1.5378 8 6 5.5535 -2.1733 1.2020 9 8 5.3730 -3.0479 0.3812 10 7 6.7488 -2.0602 1.8145 11 6 7.7591 -2.9366 1.5131 12 1 7.5973 -3.7174 0.7847 13 6 8.9915 -2.8197 2.1442 14 7 9.9597 -3.6601 1.8557 15 14 9.2715 -1.4689 3.4037 16 1 8.9064 -1.9677 4.7540 17 1 10.7022 -1.0712 3.3932 18 1 8.4285 -0.2942 3.0654 19 6 2.0756 -0.7883 1.2092 20 1 -0.3633 0.4649 0.9166 21 1 -0.3633 0.5613 -0.8609 22 1 -0.3634 -1.0262 -0.0556 23 1 1.4521 -1.6551 -1.4357 24 1 2.1842 -0.1509 -2.0869 25 1 4.1953 -0.4372 -0.7991 26 1 3.8053 -2.1337 -1.2180 27 1 4.2022 -1.2914 2.5985 28 1 4.7580 -0.1960 1.3102 29 1 6.8928 -1.3615 2.4717 30 1 10.8199 -3.5787 2.2965 31 1 1.3142 -1.4759 1.5778 32 1 2.3686 -0.1001 2.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336146708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:53 Heat of formation + Delta-G solvation = -76.002433 kcal Electronic energy + Delta-G solvation = -16309.272849 eV Core-core repulsion = 13412.377140 eV Total energy + Delta-G solvation = -2896.895709 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.73754 -39.07096 -37.50751 -33.97560 -32.76910 -31.62680 -29.92402 -27.75175 -25.47511 -23.82009 -21.28811 -20.46508 -19.34624 -18.31809 -16.52202 -16.18330 -15.46742 -15.11554 -14.98849 -14.67242 -14.22012 -13.76193 -13.28752 -13.13072 -12.93235 -12.66417 -12.44372 -12.24214 -12.03404 -11.68038 -11.57132 -11.21337 -10.97020 -10.82866 -10.57555 -10.53997 -9.95449 -9.53444 -8.57804 -8.15721 -8.00235 -6.28900 -3.80041 3.04738 3.08687 3.16632 3.76667 3.91542 4.11943 4.12779 4.37772 4.49983 4.60194 4.85694 5.15923 5.23841 5.26764 5.32941 5.40469 5.64249 5.67445 5.68511 5.78935 5.80305 5.88177 5.99417 6.17398 6.37131 7.08940 7.10523 7.60881 8.16685 8.62980 8.97718 9.45055 9.86381 10.84353 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.052130 B = 0.005861 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.989690 B = 4776.411810 C = 5053.175053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.087 3.913 3 F -0.207 7.207 4 C -0.147 4.147 5 C 0.049 3.951 6 N -0.502 5.502 7 C 0.036 3.964 8 C 0.454 3.546 9 O -0.559 6.559 10 N -0.593 5.593 11 C -0.304 4.304 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.883 5.883 15 Si 0.879 3.121 16 H -0.271 1.271 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.023 3.977 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.370 0.630 30 H 0.273 0.727 31 H 0.095 0.905 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 9.661 -0.558 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 F -0.187 7.187 4 C -0.185 4.185 5 C -0.078 4.078 6 N -0.226 5.226 7 C -0.096 4.096 8 C 0.240 3.760 9 O -0.440 6.440 10 N -0.233 5.233 11 C -0.432 4.432 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.523 5.523 15 Si 0.705 3.295 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.195 1.195 19 C -0.105 4.105 20 H 0.086 0.914 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.065 0.935 26 H 0.119 0.881 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.203 0.797 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.135 8.479 -1.015 18.255 hybrid contribution 0.703 2.050 1.057 2.412 sum -15.431 10.529 0.042 18.681 Atomic orbital electron populations 1.22194 0.92669 1.03794 1.03230 1.22224 0.94702 0.78287 0.97958 1.92847 1.89489 1.38868 1.97546 1.23360 0.98052 1.00316 0.96810 1.23100 0.95006 1.01308 0.88358 1.63334 1.02471 1.53999 1.02790 1.22182 0.91231 0.97378 0.98797 1.19606 0.83152 0.87771 0.85492 1.90544 1.81481 1.36431 1.35563 1.42206 1.11784 1.30479 1.38788 1.19426 0.89504 1.10466 1.23821 0.86277 1.25028 0.95461 0.97598 0.98062 1.69624 1.03780 1.36313 1.42561 0.86681 0.78718 0.81868 0.82192 1.19598 1.20191 1.19543 1.23533 0.94837 0.96173 0.95974 0.91431 0.91411 0.90196 0.88835 0.89855 0.93547 0.88080 0.89166 0.93017 0.79747 0.91652 0.88710 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.93 37.16 0.33 -1.02 16 2 C 0.09 1.01 1.60 -88.80 -0.14 0.87 16 3 F -0.21 -2.84 16.97 2.25 0.04 -2.80 16 4 C -0.15 -1.76 6.33 -24.59 -0.16 -1.91 16 5 C 0.05 0.79 5.74 -2.30 -0.01 0.78 16 6 N -0.50 -8.30 4.86 -232.68 -1.13 -9.43 16 7 C 0.04 0.63 5.05 -4.98 -0.03 0.61 16 8 C 0.45 10.57 7.58 -10.98 -0.08 10.48 16 9 O -0.56 -15.11 14.61 5.54 0.08 -15.03 16 10 N -0.59 -14.41 5.09 -10.96 -0.06 -14.47 16 11 C -0.30 -8.69 10.16 -14.93 -0.15 -8.84 16 12 H 0.12 3.88 7.39 -52.49 -0.39 3.50 16 13 C 0.04 1.14 5.50 -17.46 -0.10 1.05 16 14 N -0.88 -26.02 13.96 55.50 0.77 -25.25 16 15 Si 0.88 19.63 27.73 -169.99 -4.71 14.92 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -5.53 6.52 56.52 0.37 -5.17 16 19 C 0.02 0.30 6.27 -2.83 -0.02 0.28 16 20 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.08 0.58 8.11 -51.93 -0.42 0.16 16 23 H 0.09 0.99 8.03 -51.93 -0.42 0.57 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.77 7.62 -51.93 -0.40 0.38 16 26 H 0.10 1.84 7.38 -51.93 -0.38 1.46 16 27 H 0.09 1.38 8.03 -51.93 -0.42 0.96 16 28 H 0.05 0.84 7.85 -51.93 -0.41 0.44 16 29 H 0.37 7.93 5.77 -40.82 -0.24 7.69 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.09 1.05 7.82 -51.93 -0.41 0.64 16 32 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 LS Contribution 269.38 15.07 4.06 4.06 Total: -1.00 -32.60 269.38 -5.60 -38.20 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.30 Total: 7.50 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.35 Total: 2.29 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.41 Total: -49.15 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.08 Total: -15.03 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.92 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.60 -5.60 -38.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336146708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.801 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds