Wall clock time and date at job start Sun Mar 29 2020 21:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39899 * 110.63060 * 2 1 4 4 C 1.55140 * 110.85557 * 236.78735 * 2 1 3 5 5 C 1.54909 * 101.65348 * 205.89439 * 4 2 1 6 6 N 1.47846 * 104.79456 * 37.07253 * 5 4 2 7 7 C 1.46903 * 110.99792 * 213.63439 * 6 5 4 8 8 C 1.50694 * 109.47066 * 290.84234 * 7 6 5 9 9 O 1.21297 * 120.00199 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99988 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99735 * 179.72439 * 10 8 7 12 12 H 1.07998 * 120.00618 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99464 * 179.97438 * 11 10 8 14 14 N 1.31415 * 119.99620 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00237 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.46896 * 89.99788 * 15 13 11 17 17 H 1.48497 * 109.46972 * 209.99368 * 15 13 11 18 18 H 1.48494 * 109.47103 * 329.99983 * 15 13 11 19 19 C 1.47445 * 108.56658 * 335.90036 * 6 5 4 20 20 H 1.09008 * 109.46816 * 296.89686 * 1 2 3 21 21 H 1.09000 * 109.46848 * 56.89547 * 1 2 3 22 22 H 1.09002 * 109.47403 * 176.89884 * 1 2 3 23 23 H 1.09000 * 110.99257 * 323.98957 * 4 2 1 24 24 H 1.08995 * 110.98767 * 87.76625 * 4 2 1 25 25 H 1.09000 * 110.37465 * 278.24314 * 5 4 2 26 26 H 1.09000 * 110.37100 * 155.89764 * 5 4 2 27 27 H 1.08998 * 109.46809 * 170.84336 * 7 6 5 28 28 H 1.09002 * 109.47056 * 50.84077 * 7 6 5 29 29 H 0.97000 * 119.99339 * 0.02562 * 10 8 7 30 30 H 0.97000 * 119.99478 * 180.02562 * 14 13 11 31 31 H 1.09007 * 109.88335 * 120.39813 * 19 6 5 32 32 H 1.09002 * 109.88925 * 241.42035 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0229 1.3093 0.0000 4 6 2.0823 -0.7941 -1.2129 5 6 3.4691 -1.2424 -0.6881 6 7 3.2514 -1.5457 0.7424 7 6 4.4411 -1.2138 1.5378 8 6 5.5535 -2.1733 1.2020 9 8 5.3730 -3.0479 0.3812 10 7 6.7488 -2.0602 1.8145 11 6 7.7591 -2.9366 1.5131 12 1 7.5973 -3.7174 0.7847 13 6 8.9915 -2.8197 2.1442 14 7 9.9597 -3.6601 1.8557 15 14 9.2715 -1.4689 3.4037 16 1 8.9064 -1.9677 4.7540 17 1 10.7022 -1.0712 3.3932 18 1 8.4285 -0.2942 3.0654 19 6 2.0756 -0.7883 1.2092 20 1 -0.3633 0.4649 0.9166 21 1 -0.3633 0.5613 -0.8609 22 1 -0.3634 -1.0262 -0.0556 23 1 1.4521 -1.6551 -1.4357 24 1 2.1842 -0.1509 -2.0869 25 1 4.1953 -0.4372 -0.7991 26 1 3.8053 -2.1337 -1.2180 27 1 4.2022 -1.2914 2.5985 28 1 4.7580 -0.1960 1.3102 29 1 6.8928 -1.3615 2.4717 30 1 10.8199 -3.5787 2.2965 31 1 1.3142 -1.4759 1.5778 32 1 2.3686 -0.1001 2.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336146708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:53 Heat of formation + Delta-G solvation = -101.237548 kcal Electronic energy + Delta-G solvation = -16310.367125 eV Core-core repulsion = 13412.377140 eV Total energy + Delta-G solvation = -2897.989985 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.117 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.69917 -40.63782 -39.00486 -36.00179 -33.96115 -33.65678 -30.97289 -29.10339 -26.88545 -25.38182 -22.53749 -21.39064 -21.28261 -20.25629 -17.97973 -17.43756 -16.90001 -16.52958 -16.24189 -16.06246 -15.66030 -15.17960 -14.93201 -14.49252 -14.26209 -14.08128 -13.74557 -13.43324 -13.09116 -13.03621 -12.80549 -12.60903 -12.42767 -12.20104 -11.99497 -11.75718 -11.54638 -11.45133 -10.43063 -10.25486 -9.31815 -8.42295 -6.03048 1.29250 1.34260 1.43116 1.93449 2.21850 2.57829 3.09698 3.14784 3.30920 3.41669 3.64844 3.78790 4.12138 4.21586 4.24295 4.31972 4.38801 4.55321 4.70814 4.79270 4.86984 4.93196 5.05911 5.20529 5.29961 5.51263 5.81821 5.91516 5.99975 6.58583 6.86942 7.38077 7.94946 8.75429 Molecular weight = 230.12amu Principal moments of inertia in cm(-1) A = 0.052130 B = 0.005861 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.989690 B = 4776.411810 C = 5053.175053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.087 3.913 3 F -0.220 7.220 4 C -0.138 4.138 5 C 0.045 3.955 6 N -0.525 5.525 7 C 0.047 3.953 8 C 0.452 3.548 9 O -0.605 6.605 10 N -0.593 5.593 11 C -0.328 4.328 12 H 0.056 0.944 13 C -0.014 4.014 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.255 1.255 17 H -0.274 1.274 18 H -0.235 1.235 19 C 0.022 3.978 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.093 0.907 23 H 0.108 0.892 24 H 0.093 0.907 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.072 0.928 29 H 0.389 0.611 30 H 0.279 0.721 31 H 0.115 0.885 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.176 12.343 1.325 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.069 3.931 3 F -0.201 7.201 4 C -0.176 4.176 5 C -0.082 4.082 6 N -0.249 5.249 7 C -0.084 4.084 8 C 0.239 3.761 9 O -0.489 6.489 10 N -0.235 5.235 11 C -0.457 4.457 12 H 0.074 0.926 13 C -0.212 4.212 14 N -0.575 5.575 15 Si 0.784 3.216 16 H -0.179 1.179 17 H -0.199 1.199 18 H -0.158 1.158 19 C -0.105 4.105 20 H 0.097 0.903 21 H 0.094 0.906 22 H 0.112 0.888 23 H 0.127 0.873 24 H 0.112 0.888 25 H 0.051 0.949 26 H 0.084 0.916 27 H 0.141 0.859 28 H 0.090 0.910 29 H 0.224 0.776 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.162 11.177 0.868 21.343 hybrid contribution 1.300 1.100 0.367 1.742 sum -16.861 12.277 1.235 20.894 Atomic orbital electron populations 1.22183 0.89749 1.05064 1.04272 1.22361 0.96721 0.77281 0.96786 1.92827 1.89906 1.39811 1.97519 1.23338 0.95629 1.01166 0.97489 1.22994 0.97293 0.99272 0.88660 1.63252 1.03154 1.55753 1.02749 1.22103 0.89556 0.96027 1.00723 1.20811 0.83857 0.87658 0.83751 1.90527 1.82403 1.38635 1.37299 1.42037 1.11326 1.30442 1.39677 1.19005 0.91827 1.10907 1.23991 0.92602 1.26090 0.94138 1.00673 1.00319 1.69803 1.04632 1.38793 1.44245 0.85380 0.79182 0.78537 0.78529 1.17925 1.19894 1.15844 1.23669 0.93524 0.96676 0.96653 0.90269 0.90610 0.88804 0.87342 0.88830 0.94896 0.91630 0.85905 0.91049 0.77586 0.91110 0.86713 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.93 71.98 0.64 -1.35 16 2 C 0.09 1.76 1.60 -9.61 -0.02 1.74 16 3 F -0.22 -5.42 16.97 44.97 0.76 -4.66 16 4 C -0.14 -3.05 6.33 31.98 0.20 -2.85 16 5 C 0.05 1.45 5.74 86.77 0.50 1.95 16 6 N -0.52 -16.56 4.86 -890.07 -4.33 -20.89 16 7 C 0.05 1.57 5.05 85.55 0.43 2.00 16 8 C 0.45 21.20 7.58 87.65 0.66 21.87 16 9 O -0.60 -34.29 14.61 -3.08 -0.05 -34.33 16 10 N -0.59 -28.84 5.09 -306.97 -1.56 -30.40 16 11 C -0.33 -19.59 10.16 84.04 0.85 -18.73 16 12 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 13 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 14 N -0.93 -56.92 13.96 21.67 0.30 -56.61 16 15 Si 0.96 39.45 27.73 68.60 1.90 41.35 16 16 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.23 -8.23 6.52 99.48 0.65 -7.58 16 19 C 0.02 0.49 6.27 86.65 0.54 1.03 16 20 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 21 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.09 0.96 8.11 -2.39 -0.02 0.94 16 23 H 0.11 2.07 8.03 -2.39 -0.02 2.05 16 24 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.03 1.11 7.62 -2.39 -0.02 1.09 16 26 H 0.07 2.52 7.38 -2.39 -0.02 2.51 16 27 H 0.12 3.29 8.03 -2.39 -0.02 3.27 16 28 H 0.07 2.12 7.85 -2.39 -0.02 2.10 16 29 H 0.39 15.74 5.77 -92.71 -0.53 15.21 16 30 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.11 2.08 7.82 -2.38 -0.02 2.06 16 32 H 0.08 1.56 7.52 -2.39 -0.02 1.54 16 Total: -1.00 -76.09 269.38 1.85 -74.24 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.53 Total: 25.93 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 4.29 Total: 5.37 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -5.59 Total: -107.90 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.05 Total: -34.33 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.76 Total: -4.66 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.90 Total: 41.35 kcal Total: -76.09 1.85 -74.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336146708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.995 kcal (2) G-P(sol) polarization free energy of solvation -76.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds