Wall clock time and date at job start Sun Mar 29 2020 21:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81401 * 103.00324 * 2 1 4 4 H 1.09007 * 110.30391 * 307.17959 * 3 2 1 5 5 C 1.54387 * 110.34034 * 69.46025 * 3 2 1 6 6 N 1.48143 * 104.61383 * 142.73987 * 5 3 2 7 7 C 1.36946 * 127.83831 * 140.39962 * 6 5 3 8 8 H 1.07998 * 120.00030 * 197.63077 * 7 6 5 9 9 C 1.38810 * 119.99906 * 17.62319 * 7 6 5 10 10 N 1.31623 * 120.00155 * 9.27151 * 9 7 6 11 11 Si 1.86794 * 119.99987 * 189.26170 * 9 7 6 12 12 H 1.48507 * 109.47052 * 94.98638 * 11 9 7 13 13 H 1.48506 * 109.47208 * 214.98411 * 11 9 7 14 14 H 1.48499 * 109.47365 * 334.98712 * 11 9 7 15 15 C 1.48145 * 104.32552 * 320.41430 * 6 5 3 16 16 C 1.54283 * 110.34383 * 185.00151 * 3 2 1 17 17 H 1.08997 * 110.34194 * 122.15547 * 16 3 2 18 18 N 1.46893 * 110.34229 * 0.02562 * 16 3 2 19 19 C 1.46903 * 111.00042 * 75.73107 * 18 16 3 20 20 C 1.46905 * 111.00081 * 199.68492 * 18 16 3 21 21 H 1.08996 * 109.46955 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46841 * 59.99857 * 1 2 3 23 23 H 1.09003 * 109.46825 * 300.00214 * 1 2 3 24 24 H 1.09000 * 110.41381 * 261.52314 * 5 3 2 25 25 H 1.09002 * 110.40639 * 23.96010 * 5 3 2 26 26 H 0.97000 * 120.00181 * 179.97438 * 10 9 7 27 27 H 1.08996 * 110.40963 * 280.80246 * 15 6 5 28 28 H 1.09008 * 110.50583 * 158.42044 * 15 6 5 29 29 H 1.08998 * 109.47121 * 60.00122 * 19 18 16 30 30 H 1.08998 * 109.46773 * 179.97438 * 19 18 16 31 31 H 1.08997 * 109.46790 * 299.99345 * 19 18 16 32 32 H 1.08999 * 109.47179 * 65.89075 * 20 18 16 33 33 H 1.08998 * 109.47074 * 185.89605 * 20 18 16 34 34 H 1.09001 * 109.46302 * 305.89420 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7053 2.2751 -0.8145 5 6 1.8481 2.4047 1.3556 6 7 2.9256 3.3871 1.6169 7 6 2.8070 4.6410 2.1545 8 1 3.6057 5.3579 2.0343 9 6 1.6600 4.9906 2.8539 10 7 0.7690 4.0710 3.1586 11 14 1.3813 6.7661 3.3630 12 1 0.5410 7.4467 2.3451 13 1 0.6920 6.8017 4.6779 14 1 2.6890 7.4614 3.4705 15 6 4.1607 2.7055 1.1643 16 6 3.7470 1.9659 -0.1261 17 1 3.9792 2.5709 -1.0025 18 7 4.4258 0.6659 -0.2102 19 6 4.2578 0.0694 -1.5421 20 6 5.8483 0.7915 0.1347 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 0.8837 2.9079 1.2859 25 1 1.8266 1.6468 2.1387 26 1 -0.0323 4.3152 3.6476 27 1 4.5004 1.9947 1.9176 28 1 4.9426 3.4343 0.9506 29 1 4.6820 0.7345 -2.2943 30 1 4.7704 -0.8919 -1.5770 31 1 3.1966 -0.0769 -1.7434 32 1 5.9445 1.0695 1.1842 33 1 6.3491 -0.1615 -0.0362 34 1 6.3066 1.5597 -0.4882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336552327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:59 Heat of formation + Delta-G solvation = 44.012726 kcal Electronic energy + Delta-G solvation = -14996.246777 eV Core-core repulsion = 12670.768493 eV Total energy + Delta-G solvation = -2325.478285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.41115 -35.25363 -32.11278 -29.46563 -28.36186 -27.91054 -26.58262 -24.77697 -22.71462 -20.46427 -19.33076 -16.97049 -16.13755 -15.29770 -14.79929 -14.51119 -14.24783 -13.80747 -13.33373 -12.98748 -12.68702 -12.51359 -12.37986 -12.00297 -11.59303 -11.40704 -11.35850 -10.89265 -10.82889 -10.51667 -10.30981 -10.15799 -10.02882 -9.77338 -9.12175 -8.65079 -7.95122 -6.88124 -6.81077 -5.82161 -3.17988 2.36832 3.28309 3.36382 3.41657 3.43808 4.31715 4.48159 5.23600 5.29791 5.46884 5.57955 5.61007 5.65464 5.68165 5.69289 5.84331 5.88810 5.93646 6.06997 6.19247 6.22822 6.26389 6.37521 6.62515 6.75846 7.28051 7.41569 7.45442 7.53131 7.66965 8.16103 9.07013 9.70164 10.48478 11.31837 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031253 B = 0.008998 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.692019 B = 3111.102073 C = 3828.419500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 S -0.201 6.201 3 C -0.076 4.076 4 H 0.075 0.925 5 C 0.172 3.828 6 N -0.593 5.593 7 C -0.229 4.229 8 H 0.076 0.924 9 C -0.004 4.004 10 N -0.913 5.913 11 Si 0.912 3.088 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.133 3.867 16 C 0.088 3.912 17 H 0.047 0.953 18 N -0.528 5.528 19 C 0.014 3.986 20 C 0.024 3.976 21 H 0.088 0.912 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.254 0.746 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.014 0.986 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 -6.976 -7.995 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.026 5.974 3 C -0.207 4.207 4 H 0.094 0.906 5 C 0.044 3.956 6 N -0.317 5.317 7 C -0.357 4.357 8 H 0.094 0.906 9 C -0.201 4.201 10 N -0.558 5.558 11 Si 0.742 3.258 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.006 3.994 16 C -0.023 4.023 17 H 0.065 0.935 18 N -0.252 5.252 19 C -0.136 4.136 20 C -0.124 4.124 21 H 0.107 0.893 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 4.092 -8.000 -7.489 11.697 hybrid contribution -0.704 2.494 -0.356 2.616 sum 3.387 -5.506 -7.846 10.166 Atomic orbital electron populations 1.23524 0.98969 1.04978 1.04610 1.86781 1.02249 1.11295 1.97055 1.24677 0.98213 0.93269 1.04571 0.90647 1.21856 0.94220 0.91037 0.88467 1.44888 1.00639 1.13770 1.72437 1.19000 1.03230 0.86472 1.27031 0.90581 1.24943 0.98465 0.98053 0.98661 1.69914 1.11544 1.31231 1.43136 0.86104 0.77928 0.84008 0.77741 1.21561 1.21597 1.20425 1.21782 0.90927 0.94127 0.92580 1.22570 0.91773 0.88545 0.99369 0.93526 1.61938 1.12006 1.23369 1.27875 1.22787 1.04224 0.98257 0.88315 1.22396 0.88135 1.00138 1.01711 0.89330 0.91704 0.90458 0.90181 0.94254 0.93546 0.94334 0.93592 0.96784 0.92011 0.88728 0.90793 0.92039 0.96119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 10.69 101.05 1.08 -1.23 16 2 S -0.20 -3.51 17.24 -107.50 -1.85 -5.36 16 3 C -0.08 -1.51 3.45 -25.33 -0.09 -1.60 16 4 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 5 C 0.17 4.18 5.35 -2.41 -0.01 4.17 16 6 N -0.59 -15.32 3.37 -168.86 -0.57 -15.89 16 7 C -0.23 -6.37 10.34 -15.06 -0.16 -6.52 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.00 -0.10 5.39 -17.43 -0.09 -0.19 16 10 N -0.91 -26.70 10.99 55.49 0.61 -26.09 16 11 Si 0.91 21.85 29.56 -169.99 -5.03 16.83 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 15 C 0.13 2.85 5.69 -2.41 -0.01 2.83 16 16 C 0.09 1.66 2.86 -66.32 -0.19 1.47 16 17 H 0.05 0.86 8.04 -51.93 -0.42 0.45 16 18 N -0.53 -8.71 3.75 -241.49 -0.91 -9.61 16 19 C 0.01 0.19 8.80 60.07 0.53 0.72 16 20 C 0.02 0.35 8.94 60.07 0.54 0.88 16 21 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 23 H 0.08 1.29 8.14 -51.92 -0.42 0.86 16 24 H 0.08 2.15 6.67 -51.93 -0.35 1.81 16 25 H 0.04 1.04 7.82 -51.93 -0.41 0.64 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.04 0.85 6.72 -51.93 -0.35 0.50 16 28 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 29 H 0.01 0.19 8.12 -51.93 -0.42 -0.24 16 30 H 0.06 0.78 8.05 -51.93 -0.42 0.36 16 31 H 0.09 1.40 5.42 -38.66 -0.21 1.20 16 32 H 0.07 1.10 6.37 -51.93 -0.33 0.77 16 33 H 0.06 0.76 8.02 -51.93 -0.42 0.34 16 34 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 LS Contribution 277.96 15.07 4.19 4.19 Total: -1.00 -29.41 277.96 -7.36 -36.77 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -5.40 Total: -1.37 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 1.59 Total: 0.52 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.87 Total: -51.58 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.85 Total: -5.36 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.41 -7.36 -36.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.786 kcal (2) G-P(sol) polarization free energy of solvation -29.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds