Wall clock time and date at job start Sun Mar 29 2020 21:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81401 * 103.00324 * 2 1 4 4 H 1.09007 * 110.30391 * 307.17959 * 3 2 1 5 5 C 1.54387 * 110.34034 * 69.46025 * 3 2 1 6 6 N 1.48143 * 104.61383 * 142.73987 * 5 3 2 7 7 C 1.36946 * 127.83831 * 140.39962 * 6 5 3 8 8 H 1.07998 * 120.00030 * 197.63077 * 7 6 5 9 9 C 1.38810 * 119.99906 * 17.62319 * 7 6 5 10 10 N 1.31623 * 120.00155 * 9.27151 * 9 7 6 11 11 Si 1.86794 * 119.99987 * 189.26170 * 9 7 6 12 12 H 1.48507 * 109.47052 * 94.98638 * 11 9 7 13 13 H 1.48506 * 109.47208 * 214.98411 * 11 9 7 14 14 H 1.48499 * 109.47365 * 334.98712 * 11 9 7 15 15 C 1.48145 * 104.32552 * 320.41430 * 6 5 3 16 16 C 1.54283 * 110.34383 * 185.00151 * 3 2 1 17 17 H 1.08997 * 110.34194 * 122.15547 * 16 3 2 18 18 N 1.46893 * 110.34229 * 0.02562 * 16 3 2 19 19 C 1.46903 * 111.00042 * 75.73107 * 18 16 3 20 20 C 1.46905 * 111.00081 * 199.68492 * 18 16 3 21 21 H 1.08996 * 109.46955 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46841 * 59.99857 * 1 2 3 23 23 H 1.09003 * 109.46825 * 300.00214 * 1 2 3 24 24 H 1.09000 * 110.41381 * 261.52314 * 5 3 2 25 25 H 1.09002 * 110.40639 * 23.96010 * 5 3 2 26 26 H 0.97000 * 120.00181 * 179.97438 * 10 9 7 27 27 H 1.08996 * 110.40963 * 280.80246 * 15 6 5 28 28 H 1.09008 * 110.50583 * 158.42044 * 15 6 5 29 29 H 1.08998 * 109.47121 * 60.00122 * 19 18 16 30 30 H 1.08998 * 109.46773 * 179.97438 * 19 18 16 31 31 H 1.08997 * 109.46790 * 299.99345 * 19 18 16 32 32 H 1.08999 * 109.47179 * 65.89075 * 20 18 16 33 33 H 1.08998 * 109.47074 * 185.89605 * 20 18 16 34 34 H 1.09001 * 109.46302 * 305.89420 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7053 2.2751 -0.8145 5 6 1.8481 2.4047 1.3556 6 7 2.9256 3.3871 1.6169 7 6 2.8070 4.6410 2.1545 8 1 3.6057 5.3579 2.0343 9 6 1.6600 4.9906 2.8539 10 7 0.7690 4.0710 3.1586 11 14 1.3813 6.7661 3.3630 12 1 0.5410 7.4467 2.3451 13 1 0.6920 6.8017 4.6779 14 1 2.6890 7.4614 3.4705 15 6 4.1607 2.7055 1.1643 16 6 3.7470 1.9659 -0.1261 17 1 3.9792 2.5709 -1.0025 18 7 4.4258 0.6659 -0.2102 19 6 4.2578 0.0694 -1.5421 20 6 5.8483 0.7915 0.1347 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 0.8837 2.9079 1.2859 25 1 1.8266 1.6468 2.1387 26 1 -0.0323 4.3152 3.6476 27 1 4.5004 1.9947 1.9176 28 1 4.9426 3.4343 0.9506 29 1 4.6820 0.7345 -2.2943 30 1 4.7704 -0.8919 -1.5770 31 1 3.1966 -0.0769 -1.7434 32 1 5.9445 1.0695 1.1842 33 1 6.3491 -0.1615 -0.0362 34 1 6.3066 1.5597 -0.4882 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336552327.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:59 Heat of formation + Delta-G solvation = 25.359210 kcal Electronic energy + Delta-G solvation = -14997.055655 eV Core-core repulsion = 12670.768493 eV Total energy + Delta-G solvation = -2326.287162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96557 -36.87691 -34.07675 -31.25963 -29.71181 -29.36043 -27.99798 -26.65338 -24.11126 -22.38670 -20.84884 -18.94388 -17.61664 -17.02370 -16.49357 -15.96983 -15.72317 -15.23770 -14.99732 -14.42180 -14.24285 -14.04162 -13.92283 -13.27605 -13.13220 -12.95624 -12.81684 -12.68413 -12.40333 -12.21276 -11.97140 -11.87088 -11.80826 -11.68426 -10.84842 -10.47947 -9.21393 -8.93950 -8.22858 -7.92572 -5.32926 0.94265 1.45412 1.46612 1.56403 1.87302 2.45785 3.05704 3.25405 3.70625 3.73330 3.92305 4.25124 4.32766 4.41103 4.46296 4.48554 4.57357 4.61301 4.76789 4.80844 4.94666 4.98990 5.02633 5.15076 5.25073 5.29325 5.46765 5.55284 6.05826 6.18772 6.25986 6.96050 7.62882 8.42809 9.19308 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.031253 B = 0.008998 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.692019 B = 3111.102073 C = 3828.419500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 S -0.188 6.188 3 C -0.073 4.073 4 H 0.077 0.923 5 C 0.186 3.814 6 N -0.618 5.618 7 C -0.243 4.243 8 H 0.082 0.918 9 C -0.060 4.060 10 N -0.945 5.945 11 Si 0.981 3.019 12 H -0.286 1.286 13 H -0.294 1.294 14 H -0.265 1.265 15 C 0.135 3.865 16 C 0.101 3.899 17 H 0.054 0.946 18 N -0.541 5.541 19 C 0.016 3.984 20 C 0.025 3.975 21 H 0.115 0.885 22 H 0.077 0.923 23 H 0.056 0.944 24 H 0.046 0.954 25 H 0.008 0.992 26 H 0.250 0.750 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.024 0.976 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -7.388 -9.299 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.039 5.961 3 C -0.204 4.204 4 H 0.096 0.904 5 C 0.058 3.942 6 N -0.343 5.343 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.592 5.592 11 Si 0.808 3.192 12 H -0.212 1.212 13 H -0.220 1.220 14 H -0.190 1.190 15 C 0.008 3.992 16 C -0.010 4.010 17 H 0.072 0.928 18 N -0.265 5.265 19 C -0.133 4.133 20 C -0.123 4.123 21 H 0.134 0.866 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.065 0.935 25 H 0.026 0.974 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.020 -8.429 -8.819 13.192 hybrid contribution -0.958 2.533 0.056 2.709 sum 4.061 -5.896 -8.763 11.316 Atomic orbital electron populations 1.23597 0.97338 1.06655 1.04254 1.86644 1.04062 1.08420 1.96938 1.24451 0.99328 0.95206 1.01450 0.90448 1.21538 0.92706 0.89841 0.90130 1.45196 1.02684 1.13763 1.72646 1.19390 1.03418 0.87628 1.26777 0.90026 1.25796 0.98340 1.02108 0.99126 1.70105 1.11875 1.33160 1.44083 0.85040 0.78121 0.79178 0.76850 1.21245 1.22012 1.18967 1.21860 0.89644 0.94096 0.93551 1.22303 0.91059 0.89751 0.97857 0.92806 1.61909 1.13257 1.21739 1.29633 1.22783 1.04154 0.99160 0.87174 1.22428 0.86981 1.01781 1.01090 0.86610 0.90365 0.92515 0.93541 0.97360 0.94063 0.95127 0.92683 0.95738 0.90085 0.89429 0.92033 0.89692 0.95203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.38 10.69 113.37 1.21 -3.17 16 2 S -0.19 -6.32 17.24 -56.49 -0.97 -7.29 16 3 C -0.07 -2.89 3.45 31.50 0.11 -2.78 16 4 H 0.08 2.99 8.14 -2.38 -0.02 2.98 16 5 C 0.19 9.31 5.35 86.53 0.46 9.78 16 6 N -0.62 -32.50 3.37 -688.15 -2.32 -34.82 16 7 C -0.24 -13.70 10.34 84.03 0.87 -12.83 16 8 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 9 C -0.06 -3.38 5.39 84.86 0.46 -2.93 16 10 N -0.95 -57.01 10.99 21.65 0.24 -56.77 16 11 Si 0.98 45.38 29.56 68.60 2.03 47.41 16 12 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 13 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 15 C 0.13 5.74 5.69 86.53 0.49 6.23 16 16 C 0.10 3.68 2.86 45.82 0.13 3.81 16 17 H 0.05 1.89 8.04 -2.39 -0.02 1.87 16 18 N -0.54 -16.67 3.75 -917.93 -3.44 -20.11 16 19 C 0.02 0.41 8.80 127.69 1.12 1.53 16 20 C 0.02 0.64 8.94 127.69 1.14 1.79 16 21 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 22 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 2.61 6.67 -2.39 -0.02 2.59 16 25 H 0.01 0.47 7.82 -2.39 -0.02 0.45 16 26 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 27 H 0.03 1.36 6.72 -2.39 -0.02 1.35 16 28 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.02 0.57 8.12 -2.39 -0.02 0.55 16 30 H 0.08 1.75 8.05 -2.39 -0.02 1.73 16 31 H 0.09 2.36 5.42 -10.83 -0.06 2.30 16 32 H 0.06 1.74 6.37 -2.39 -0.02 1.73 16 33 H 0.08 1.81 8.02 -2.39 -0.02 1.79 16 34 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 Total: -1.00 -63.71 277.96 2.54 -61.18 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 1.01 Total: 8.97 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.00 Total: 1.43 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -5.53 Total: -111.70 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: -6.32 SS G_CDS: -0.97 Total: -7.29 kcal Total: -63.71 2.54 -61.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552327.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.536 kcal (2) G-P(sol) polarization free energy of solvation -63.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds