Wall clock time and date at job start Sun Mar 29 2020 21:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81401 * 102.99773 * 2 1 4 4 H 1.08998 * 110.88921 * 51.11562 * 3 2 1 5 5 C 1.54917 * 111.00148 * 287.19173 * 3 2 1 6 6 N 1.47417 * 104.83205 * 204.91842 * 5 3 2 7 7 C 1.36941 * 125.65018 * 204.08715 * 6 5 3 8 8 H 1.08001 * 120.00171 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99782 * 0.04979 * 7 6 5 10 10 N 1.31625 * 119.99825 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00024 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46943 * 60.00086 * 11 9 7 13 13 H 1.48502 * 109.47168 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47287 * 300.00085 * 11 9 7 15 15 C 1.47025 * 108.70425 * 24.12899 * 6 5 3 16 16 C 1.54319 * 107.26989 * 358.94335 * 15 6 5 17 17 H 1.09002 * 110.72401 * 96.17064 * 16 15 6 18 18 N 1.46906 * 110.87005 * 219.37032 * 16 15 6 19 19 C 1.46902 * 111.00024 * 178.52275 * 18 16 15 20 20 C 1.46896 * 110.99969 * 302.47946 * 18 16 15 21 21 H 1.08996 * 109.47240 * 299.99823 * 1 2 3 22 22 H 1.09001 * 109.46835 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47151 * 60.00689 * 1 2 3 24 24 H 1.08996 * 110.36457 * 323.76065 * 5 3 2 25 25 H 1.08997 * 110.35959 * 86.07963 * 5 3 2 26 26 H 0.97001 * 119.99575 * 179.97438 * 10 9 7 27 27 H 1.09000 * 109.88483 * 239.51958 * 15 6 5 28 28 H 1.09001 * 110.00752 * 118.43406 * 15 6 5 29 29 H 1.09007 * 109.46823 * 59.99984 * 19 18 16 30 30 H 1.08996 * 109.47117 * 179.97438 * 19 18 16 31 31 H 1.08997 * 109.47025 * 300.00133 * 19 18 16 32 32 H 1.09005 * 109.47131 * 65.59265 * 20 18 16 33 33 H 1.09002 * 109.47023 * 185.58727 * 20 18 16 34 34 H 1.08997 * 109.47392 * 305.58998 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6865 2.2900 0.7927 5 6 1.9303 2.4047 -1.3816 6 7 2.8229 3.5757 -1.4532 7 6 2.6220 4.6862 -2.2288 8 1 3.3384 5.4943 -2.2109 9 6 1.4974 4.7735 -3.0378 10 7 0.6239 3.7891 -3.0589 11 14 1.2236 6.2880 -4.0964 12 1 2.3584 6.4428 -5.0418 13 1 -0.0406 6.1359 -4.8606 14 1 1.1351 7.4895 -3.2282 15 6 3.9652 3.3535 -0.5546 16 6 3.7531 1.9849 0.1262 17 1 4.2985 1.2027 -0.4020 18 7 4.1563 2.0344 1.5379 19 6 3.9229 0.7429 2.1978 20 6 5.5599 2.4471 1.6703 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 2.1631 1.7008 -2.1806 25 1 0.8881 2.7178 -1.4424 26 1 -0.1622 3.8503 -3.6239 27 1 4.0029 4.1404 0.1987 28 1 4.8931 3.3433 -1.1264 29 1 4.5026 -0.0317 1.6956 30 1 4.2304 0.8072 3.2415 31 1 2.8628 0.4946 2.1456 32 1 5.6703 3.4753 1.3256 33 1 5.8613 2.3801 2.7157 34 1 6.1896 1.7924 1.0679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336552330.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:06 Heat of formation + Delta-G solvation = 39.092896 kcal Electronic energy + Delta-G solvation = -14931.824537 eV Core-core repulsion = 12606.132913 eV Total energy + Delta-G solvation = -2325.691625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.39024 -35.37243 -32.11124 -29.54765 -28.50197 -27.85794 -26.68344 -24.64391 -22.75793 -20.34156 -19.49870 -17.07417 -16.13505 -15.58023 -14.53694 -14.45178 -14.27346 -13.74714 -13.32702 -13.19654 -12.88855 -12.58754 -12.10376 -11.99734 -11.92592 -11.56321 -11.37275 -11.00582 -10.82513 -10.54909 -10.39572 -10.16146 -9.99886 -9.84340 -9.27736 -8.68136 -8.05592 -7.12646 -6.88210 -5.69085 -3.10855 2.22483 3.06090 3.39802 3.43686 3.45022 4.21408 4.49741 5.08544 5.39786 5.44210 5.50919 5.58288 5.59683 5.63464 5.68078 5.75736 5.83737 5.90372 6.08062 6.13129 6.15031 6.27961 6.39994 6.60900 6.65833 7.33580 7.42296 7.43663 7.56293 7.74974 8.27622 9.16843 9.77794 10.41989 11.35161 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.009248 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.508045 B = 3026.925064 C = 3915.408444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.276 6.276 3 C -0.066 4.066 4 H 0.094 0.906 5 C 0.166 3.834 6 N -0.601 5.601 7 C -0.221 4.221 8 H 0.079 0.921 9 C -0.011 4.011 10 N -0.924 5.924 11 Si 0.917 3.083 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.148 3.852 16 C 0.095 3.905 17 H 0.051 0.949 18 N -0.537 5.537 19 C 0.018 3.982 20 C 0.025 3.975 21 H 0.071 0.929 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.026 0.974 25 H 0.110 0.890 26 H 0.253 0.747 27 H 0.039 0.961 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.441 -6.066 8.220 10.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.048 6.048 3 C -0.196 4.196 4 H 0.112 0.888 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.350 4.350 8 H 0.097 0.903 9 C -0.206 4.206 10 N -0.573 5.573 11 Si 0.748 3.252 12 H -0.212 1.212 13 H -0.215 1.215 14 H -0.211 1.211 15 C 0.020 3.980 16 C -0.015 4.015 17 H 0.069 0.931 18 N -0.261 5.261 19 C -0.131 4.131 20 C -0.124 4.124 21 H 0.090 0.910 22 H 0.109 0.891 23 H 0.103 0.897 24 H 0.044 0.956 25 H 0.128 0.872 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.647 -6.531 8.302 11.175 hybrid contribution -0.401 1.076 -0.953 1.492 sum 3.245 -5.455 7.349 9.711 Atomic orbital electron populations 1.23289 0.94435 1.05353 1.05431 1.86251 1.07676 1.13377 1.97510 1.24918 0.98173 0.91323 1.05208 0.88772 1.22281 0.99261 0.87173 0.87439 1.44420 1.21285 1.18141 1.48941 1.19053 1.05235 0.94254 1.16432 0.90287 1.24792 0.97308 0.98349 1.00183 1.69736 1.13244 1.31418 1.42870 0.86110 0.77188 0.81967 0.79985 1.21162 1.21543 1.21115 1.21280 0.91501 0.92823 0.92405 1.22491 0.93514 0.98110 0.87353 0.93115 1.62032 1.20363 1.29652 1.14024 1.22626 1.03566 0.89044 0.97815 1.22380 0.88032 1.01095 1.00875 0.90980 0.89064 0.89718 0.95599 0.87242 0.93598 0.94315 0.95882 0.96035 0.92272 0.89456 0.91030 0.91863 0.95964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.72 10.76 101.05 1.09 -0.64 16 2 S -0.28 -4.79 19.37 -107.50 -2.08 -6.87 16 3 C -0.07 -1.32 2.64 -24.58 -0.06 -1.39 16 4 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 5 C 0.17 4.06 5.37 -2.53 -0.01 4.05 16 6 N -0.60 -15.63 3.39 -170.08 -0.58 -16.21 16 7 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 10 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 11 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.15 3.20 5.88 -3.07 -0.02 3.18 16 16 C 0.10 1.82 2.20 -65.88 -0.14 1.68 16 17 H 0.05 1.01 8.03 -51.93 -0.42 0.59 16 18 N -0.54 -8.85 4.85 -240.95 -1.17 -10.02 16 19 C 0.02 0.27 8.84 60.07 0.53 0.80 16 20 C 0.02 0.34 9.21 60.06 0.55 0.89 16 21 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 22 H 0.09 1.13 8.14 -51.92 -0.42 0.71 16 23 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 24 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 25 H 0.11 2.98 5.87 -51.93 -0.30 2.67 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.04 0.84 7.40 -51.93 -0.38 0.46 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.73 8.06 -51.93 -0.42 0.32 16 31 H 0.09 1.33 5.71 -51.93 -0.30 1.03 16 32 H 0.07 1.01 6.94 -51.93 -0.36 0.65 16 33 H 0.06 0.75 8.02 -51.93 -0.42 0.33 16 34 H 0.02 0.30 8.13 -51.93 -0.42 -0.12 16 LS Contribution 280.42 15.07 4.23 4.23 Total: -1.00 -29.13 280.42 -7.91 -37.04 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.52 Total: -0.87 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 1.68 Total: 1.83 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -1.19 Total: -52.33 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -4.79 SS G_CDS: -2.08 Total: -6.87 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.13 -7.91 -37.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552330.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.135 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds