Wall clock time and date at job start Sun Mar 29 2020 21:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81401 * 102.99773 * 2 1 4 4 H 1.08998 * 110.88921 * 51.11562 * 3 2 1 5 5 C 1.54917 * 111.00148 * 287.19173 * 3 2 1 6 6 N 1.47417 * 104.83205 * 204.91842 * 5 3 2 7 7 C 1.36941 * 125.65018 * 204.08715 * 6 5 3 8 8 H 1.08001 * 120.00171 * 180.02562 * 7 6 5 9 9 C 1.38814 * 119.99782 * 0.04979 * 7 6 5 10 10 N 1.31625 * 119.99825 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00024 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46943 * 60.00086 * 11 9 7 13 13 H 1.48502 * 109.47168 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47287 * 300.00085 * 11 9 7 15 15 C 1.47025 * 108.70425 * 24.12899 * 6 5 3 16 16 C 1.54319 * 107.26989 * 358.94335 * 15 6 5 17 17 H 1.09002 * 110.72401 * 96.17064 * 16 15 6 18 18 N 1.46906 * 110.87005 * 219.37032 * 16 15 6 19 19 C 1.46902 * 111.00024 * 178.52275 * 18 16 15 20 20 C 1.46896 * 110.99969 * 302.47946 * 18 16 15 21 21 H 1.08996 * 109.47240 * 299.99823 * 1 2 3 22 22 H 1.09001 * 109.46835 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47151 * 60.00689 * 1 2 3 24 24 H 1.08996 * 110.36457 * 323.76065 * 5 3 2 25 25 H 1.08997 * 110.35959 * 86.07963 * 5 3 2 26 26 H 0.97001 * 119.99575 * 179.97438 * 10 9 7 27 27 H 1.09000 * 109.88483 * 239.51958 * 15 6 5 28 28 H 1.09001 * 110.00752 * 118.43406 * 15 6 5 29 29 H 1.09007 * 109.46823 * 59.99984 * 19 18 16 30 30 H 1.08996 * 109.47117 * 179.97438 * 19 18 16 31 31 H 1.08997 * 109.47025 * 300.00133 * 19 18 16 32 32 H 1.09005 * 109.47131 * 65.59265 * 20 18 16 33 33 H 1.09002 * 109.47023 * 185.58727 * 20 18 16 34 34 H 1.08997 * 109.47392 * 305.58998 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6865 2.2900 0.7927 5 6 1.9303 2.4047 -1.3816 6 7 2.8229 3.5757 -1.4532 7 6 2.6220 4.6862 -2.2288 8 1 3.3384 5.4943 -2.2109 9 6 1.4974 4.7735 -3.0378 10 7 0.6239 3.7891 -3.0589 11 14 1.2236 6.2880 -4.0964 12 1 2.3584 6.4428 -5.0418 13 1 -0.0406 6.1359 -4.8606 14 1 1.1351 7.4895 -3.2282 15 6 3.9652 3.3535 -0.5546 16 6 3.7531 1.9849 0.1262 17 1 4.2985 1.2027 -0.4020 18 7 4.1563 2.0344 1.5379 19 6 3.9229 0.7429 2.1978 20 6 5.5599 2.4471 1.6703 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 -0.8900 24 1 2.1631 1.7008 -2.1806 25 1 0.8881 2.7178 -1.4424 26 1 -0.1622 3.8503 -3.6239 27 1 4.0029 4.1404 0.1987 28 1 4.8931 3.3433 -1.1264 29 1 4.5026 -0.0317 1.6956 30 1 4.2304 0.8072 3.2415 31 1 2.8628 0.4946 2.1456 32 1 5.6703 3.4753 1.3256 33 1 5.8613 2.3801 2.7157 34 1 6.1896 1.7924 1.0679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336552330.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:06 Heat of formation + Delta-G solvation = 20.139108 kcal Electronic energy + Delta-G solvation = -14932.646435 eV Core-core repulsion = 12606.132913 eV Total energy + Delta-G solvation = -2326.513522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.97450 -36.99702 -34.06629 -31.36006 -29.85270 -29.32041 -28.06697 -26.54359 -24.18795 -22.23161 -21.05801 -19.04617 -17.69128 -17.26643 -16.31892 -15.91838 -15.60388 -15.23956 -14.93718 -14.73635 -14.19245 -14.09823 -13.78020 -13.58567 -13.17201 -13.11476 -12.89333 -12.70117 -12.53926 -12.17878 -12.14153 -11.87527 -11.80247 -11.67912 -10.90273 -10.71998 -9.33778 -8.95845 -8.53524 -7.79775 -5.26016 0.79677 1.46911 1.50266 1.56531 1.64602 2.47444 2.92284 3.31321 3.51736 3.82288 3.92544 4.07079 4.32913 4.36819 4.39974 4.48403 4.53124 4.55689 4.73419 4.79222 4.89976 4.92880 5.00212 5.05862 5.18010 5.40057 5.47591 5.66477 6.05124 6.14923 6.22507 7.05199 7.71124 8.35431 9.21661 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.009248 C = 0.007150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.508045 B = 3026.925064 C = 3915.408444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.263 6.263 3 C -0.057 4.057 4 H 0.086 0.914 5 C 0.176 3.824 6 N -0.624 5.624 7 C -0.242 4.242 8 H 0.084 0.916 9 C -0.064 4.064 10 N -0.948 5.948 11 Si 0.984 3.016 12 H -0.278 1.278 13 H -0.292 1.292 14 H -0.276 1.276 15 C 0.147 3.853 16 C 0.111 3.889 17 H 0.045 0.955 18 N -0.546 5.546 19 C 0.021 3.979 20 C 0.024 3.976 21 H 0.084 0.916 22 H 0.122 0.878 23 H 0.065 0.935 24 H -0.004 1.004 25 H 0.080 0.920 26 H 0.249 0.751 27 H 0.040 0.960 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.995 -6.384 9.404 12.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.036 6.036 3 C -0.188 4.188 4 H 0.105 0.895 5 C 0.049 3.951 6 N -0.351 5.351 7 C -0.371 4.371 8 H 0.102 0.898 9 C -0.257 4.257 10 N -0.598 5.598 11 Si 0.811 3.189 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.202 1.202 15 C 0.020 3.980 16 C 0.000 4.000 17 H 0.063 0.937 18 N -0.270 5.270 19 C -0.127 4.127 20 C -0.124 4.124 21 H 0.103 0.897 22 H 0.140 0.860 23 H 0.084 0.916 24 H 0.014 0.986 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.232 -6.855 9.514 12.467 hybrid contribution -0.569 1.126 -1.293 1.807 sum 3.663 -5.728 8.222 10.669 Atomic orbital electron populations 1.23391 0.92347 1.07271 1.05144 1.86159 1.09941 1.10069 1.97395 1.24553 0.99039 0.93430 1.01731 0.89541 1.21941 0.97415 0.86485 0.89274 1.44728 1.22963 1.18010 1.49376 1.19438 1.05527 0.95133 1.16965 0.89840 1.25655 0.97160 1.01266 1.01611 1.69985 1.13406 1.33045 1.43330 0.85075 0.76836 0.78676 0.78265 1.20431 1.21804 1.20190 1.21374 0.90189 0.94548 0.91892 1.22220 0.92612 0.96095 0.89063 0.93745 1.62015 1.22154 1.31019 1.11826 1.22640 1.03135 0.87957 0.99008 1.22456 0.86523 1.00713 1.02725 0.89664 0.86005 0.91611 0.98591 0.90240 0.94143 0.94191 0.95628 0.95883 0.89665 0.90337 0.91630 0.89158 0.95503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.20 10.76 113.37 1.22 -1.98 16 2 S -0.26 -8.87 19.37 -56.49 -1.09 -9.97 16 3 C -0.06 -2.30 2.64 31.99 0.08 -2.22 16 4 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 5 C 0.18 8.92 5.37 86.86 0.47 9.39 16 6 N -0.62 -33.14 3.39 -692.00 -2.35 -35.49 16 7 C -0.24 -13.71 10.27 84.03 0.86 -12.85 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 10 N -0.95 -56.23 10.09 21.65 0.22 -56.01 16 11 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 14 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 15 C 0.15 6.37 5.88 86.73 0.51 6.88 16 16 C 0.11 4.15 2.20 46.10 0.10 4.26 16 17 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 18 N -0.55 -16.94 4.85 -916.24 -4.45 -21.39 16 19 C 0.02 0.55 8.84 127.69 1.13 1.68 16 20 C 0.02 0.60 9.21 127.69 1.18 1.77 16 21 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 23 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.00 -0.21 8.03 -2.39 -0.02 -0.23 16 25 H 0.08 4.51 5.87 -2.39 -0.01 4.50 16 26 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 27 H 0.04 1.73 7.40 -2.39 -0.02 1.71 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.08 1.80 8.06 -2.39 -0.02 1.79 16 31 H 0.08 2.21 5.71 -2.39 -0.01 2.20 16 32 H 0.06 1.73 6.94 -2.38 -0.02 1.72 16 33 H 0.09 1.81 8.02 -2.39 -0.02 1.79 16 34 H 0.03 0.66 8.13 -2.39 -0.02 0.64 16 Total: -1.00 -63.08 280.42 1.42 -61.66 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.05 Total: 9.83 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 6.02 Total: 3.75 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -6.58 Total: -112.89 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.09 Total: -9.97 kcal Total: -63.08 1.42 -61.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336552330.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.798 kcal (2) G-P(sol) polarization free energy of solvation -63.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds